BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.8
(558 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC221306 similar to UP|Q9SKB3 (Q9SKB3) Poly(ADP-ribose) glycohyd... 355 e-100
BM188046 251 8e-67
TC229141 weakly similar to UP|Q9SKB3 (Q9SKB3) Poly(ADP-ribose) g... 147 2e-35
TC205446 weakly similar to UP|Q8LCN5 (Q8LCN5) Arabinogalactan-pr... 37 0.030
TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding ... 34 0.15
TC204113 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 34 0.15
BQ133565 similar to GP|18376344|emb related to lariat-debranchin... 33 0.34
TC205447 weakly similar to UP|Q9SXQ2 (Q9SXQ2) Polyprotein, parti... 33 0.44
TC211264 32 0.57
TC204115 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial... 32 0.75
TC204108 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial... 32 0.75
TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide s... 32 0.75
TC223428 similar to UP|Q8VZE1 (Q8VZE1) At2g17250/T23A1.11, parti... 32 0.98
TC206122 weakly similar to PIR|C86473|C86473 arabinogalactan-pro... 32 0.98
BG510261 31 1.3
TC228724 similar to UP|Q9FML2 (Q9FML2) Histone deacetylase, part... 31 1.7
AW277771 similar to GP|28396175|gb| malonyl-coenzyme A: anthocya... 31 1.7
TC204112 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%) 31 1.7
AW233767 31 1.7
TC220539 weakly similar to UP|Q8S995 (Q8S995) Glucosyltransferas... 31 1.7
>TC221306 similar to UP|Q9SKB3 (Q9SKB3) Poly(ADP-ribose) glycohydrolase,
partial (14%)
Length = 921
Score = 355 bits (911), Expect(2) = e-100
Identities = 186/256 (72%), Positives = 210/256 (81%), Gaps = 2/256 (0%)
Frame = +3
Query: 71 TSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKWFQEVVPALGILLLRLPSLLEAHYQNAD 130
+SEP PS P+ Y L D S EES KWFQEV+PALG LLLRLPSLLE+HYQN D
Sbjct: 165 SSEPLAPSAPHGYALFF--DEVMSG--EESSKWFQEVLPALGNLLLRLPSLLESHYQNTD 332
Query: 131 RVL--DEDGGLVRTGLRLLDSQEPGIVFLSQELIAALLVCSFFCLFPVNERYGKHLQSIN 188
+ E G ++ T LRLLDSQ+PGIVFL+QELIAALL CS FCLFPV++R HL IN
Sbjct: 333 NMAIDGEAGAMLTTALRLLDSQQPGIVFLTQELIAALLSCSLFCLFPVSDRPVIHLPMIN 512
Query: 189 FDELFGSLYDYYSQKQESKIQCIIHYFQRITSNMPQGVVSFERKVLPLEDDYIHISYPNA 248
FD LFGSLYD YSQKQE+KI CI+HYFQRI+S MP+G+VSFERKVLP ++D IHISYP+A
Sbjct: 513 FDVLFGSLYDDYSQKQENKIWCIVHYFQRISSEMPKGIVSFERKVLPFKNDSIHISYPDA 692
Query: 249 DVWSTSIIPLCRFEVHSSGLIEDQLSEAVEVDFANEYLGGGALRRGCVQEEIRFMISPEL 308
+ WSTS IPLCRFEVHSSGLIEDQ S AVEVDFAN+YLGGGAL RGCVQEEIRFM+SPEL
Sbjct: 693 NFWSTSAIPLCRFEVHSSGLIEDQSSGAVEVDFANKYLGGGALGRGCVQEEIRFMVSPEL 872
Query: 309 IVDMLFLPSMADNEAI 324
+V MLFLP+MADNEAI
Sbjct: 873 MVGMLFLPAMADNEAI 920
Score = 44.3 bits (103), Expect = 1e-04
Identities = 24/37 (64%), Positives = 25/37 (66%)
Frame = +1
Query: 60 TPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSST 96
T AT S PF TSE PF SLPN PLPL+ PSSST
Sbjct: 109 TRATTFSKPFLTSETPFLSLPNP*PLPLRMAMPSSST 219
Score = 28.5 bits (62), Expect(2) = e-100
Identities = 21/43 (48%), Positives = 21/43 (48%)
Frame = +2
Query: 36 IDSSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPPFPS 78
IDS IST A LSVLA PS T T A P FPS
Sbjct: 8 IDSGISTRGHALFLSVLAVPSGGNTERTRRRAS-QLGPPLFPS 133
>BM188046
Length = 437
Score = 251 bits (640), Expect = 8e-67
Identities = 122/144 (84%), Positives = 129/144 (88%)
Frame = +2
Query: 345 SGNYVDERDVDTLGRRKTRIVAIDALCSPGMRQYRPKFLLREINKAFCGFLYGSKHQLYQ 404
SG+YVDER+VDTLGRRKTRIVAIDALCSPGMRQYR FLLREINKAFCGFLY K+Q YQ
Sbjct: 5 SGDYVDEREVDTLGRRKTRIVAIDALCSPGMRQYRANFLLREINKAFCGFLYQCKYQPYQ 184
Query: 405 KILQEKGCPSTLFDAATSTPMETSEGKCSNHEIRDSQNDYHRMEQCNNIGVATGNWGCGA 464
KILQE GC S LF AATST MET EG+ SNH+I +SQNDYH M+Q NNIGVATGNWGCGA
Sbjct: 185 KILQENGCTSALFYAATSTSMETDEGEISNHKITNSQNDYHGMDQGNNIGVATGNWGCGA 364
Query: 465 FGGDPEVKTIIQWLAASQALRPFI 488
FGGDPEVKTIIQWLAASQALRPFI
Sbjct: 365 FGGDPEVKTIIQWLAASQALRPFI 436
>TC229141 weakly similar to UP|Q9SKB3 (Q9SKB3) Poly(ADP-ribose)
glycohydrolase, partial (13%)
Length = 717
Score = 147 bits (370), Expect = 2e-35
Identities = 70/88 (79%), Positives = 78/88 (88%), Gaps = 1/88 (1%)
Frame = +1
Query: 471 VKTIIQWLAASQALRPFIAYYTFRLEALHNIDKVAHWILSHRWTVGDLWNMLTEYSMNRS 530
VKTIIQWLA+SQALRPFIAYYTF LEAL ++D+VAHWILS RWTVGDLWNML EYS+NRS
Sbjct: 1 VKTIIQWLASSQALRPFIAYYTFGLEALQSLDEVAHWILSQRWTVGDLWNMLIEYSINRS 180
Query: 531 KGETNVGFLQWVLPSMY-DDAGMDFSNI 557
KGETNVGFLQW+LPS+Y A MD N+
Sbjct: 181 KGETNVGFLQWLLPSIYGHGARMDLPNL 264
>TC205446 weakly similar to UP|Q8LCN5 (Q8LCN5) Arabinogalactan-protein,
partial (39%)
Length = 668
Score = 36.6 bits (83), Expect = 0.030
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 51 VLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEES 100
VLA P + +PA + SA P+S PP P++ P P D+P S + S
Sbjct: 166 VLATPQKSPSPAISPSAVSPSSSPPAPTVNAPSPSPTSVDSPPSPPLSPS 315
>TC204083 similar to UP|O48567 (O48567) Glycine-rich RNA-binding protein,
partial (95%)
Length = 1019
Score = 34.3 bits (77), Expect = 0.15
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -3
Query: 55 PSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTP 92
P R P+ P P PP+P LP LYP PL P
Sbjct: 432 PLRLYPPSRRPPYPPPPPPPPYPPLPRLYPPPLPKPPP 319
>TC204113 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 803
Score = 34.3 bits (77), Expect = 0.15
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +3
Query: 6 CQSNICTVTCFLSSHFTSLLRE-NGKQTRLEIDSSISTPRDAFLLSVLAFPSRRITPATN 64
C S +C FLS HF L R +G ++ + P D L P PA+N
Sbjct: 15 CHSFLCHRNSFLSKHFKHLERSLSGN*VKVHQWQVAAKP*D--LAPPRRLPQGAAKPASN 188
Query: 65 C-SAPFPTSEPPFPSLPNLYPLPLQTDTPSSSTIEESRKW 103
SA P S P +L P PL T +P S I R W
Sbjct: 189 SPSAVSPVSSRPENTLSVSAPAPLST-SPPYSNISRLRFW 305
>BQ133565 similar to GP|18376344|emb related to lariat-debranching enzyme
{Neurospora crassa}, partial (3%)
Length = 371
Score = 33.1 bits (74), Expect = 0.34
Identities = 17/35 (48%), Positives = 19/35 (53%), Gaps = 1/35 (2%)
Frame = -1
Query: 59 ITPATNCSAPFPTSEP-PFPSLPNLYPLPLQTDTP 92
+TP T C P+P P P LP L PLPL D P
Sbjct: 338 LTPPTPCPLPWPRPRPAPLNGLPPLPPLPLY*DGP 234
>TC205447 weakly similar to UP|Q9SXQ2 (Q9SXQ2) Polyprotein, partial (3%)
Length = 790
Score = 32.7 bits (73), Expect = 0.44
Identities = 20/63 (31%), Positives = 31/63 (48%)
Frame = +2
Query: 32 TRLEIDSSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDT 91
T + S S+P + + +A P + +PA + SA P+S PP P + P P D+
Sbjct: 86 TSVVAQSPASSPALSPKRTPVATPQKSPSPAISPSAVSPSSSPPAPVVNTPSPSPNSVDS 265
Query: 92 PSS 94
P S
Sbjct: 266 PPS 274
>TC211264
Length = 474
Score = 32.3 bits (72), Expect = 0.57
Identities = 24/88 (27%), Positives = 37/88 (41%), Gaps = 3/88 (3%)
Frame = +2
Query: 7 QSNICTVTCFLSSHFTSLLREN--GKQTRLEIDSSISTPRDAFLLSVLAFPSRRITPATN 64
Q N+C T S++ G +L++ +S+++ + F L FP I
Sbjct: 206 QDNLCVYTLSGLSYYPPQKNTTLCGHDQQLQLPNSLNSSKCYFPWPQLPFPPFAINATNT 385
Query: 65 CSA-PFPTSEPPFPSLPNLYPLPLQTDT 91
SA PFPT +L YP P + T
Sbjct: 386 ISAFPFPTISSNPINLATSYPFPFSSST 469
>TC204115 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 722
Score = 32.0 bits (71), Expect = 0.75
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Frame = -1
Query: 47 FLLSVLAFPSRRITPATNCS--------APFPTSEPPFPSLPNLYPLPLQTDTPSSSTIE 98
FLLS+ AFP+ T A S AP PT FP+L N LP P+ +E
Sbjct: 326 FLLSLAAFPANSKTSAARYSSTAERYTGAPAPTRSAYFPALRNRAILPTGNWRPAFCDLE 147
Query: 99 ESRKWFQEVVPALGILLLRLPSLLE 123
+ ALG L LP L+E
Sbjct: 146 TD-------LEALG---LPLPPLVE 102
>TC204108 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 751
Score = 32.0 bits (71), Expect = 0.75
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Frame = -3
Query: 47 FLLSVLAFPSRRITPATNCS--------APFPTSEPPFPSLPNLYPLPLQTDTPSSSTIE 98
FLLS+ AFP+ T A S AP PT FP+L N LP P+ +E
Sbjct: 347 FLLSLAAFPANSKTSAARYSSTAERYTGAPAPTRSAYFPALRNRAILPTGNWRPAFCDLE 168
Query: 99 ESRKWFQEVVPALGILLLRLPSLLE 123
+ ALG L LP L+E
Sbjct: 167 TD-------LEALG---LPLPPLVE 123
>TC215140 similar to GB|AAL32703.1|17065098|AY062625 nucleotide sugar
epimerase-like protein {Arabidopsis thaliana;} , partial
(91%)
Length = 1885
Score = 32.0 bits (71), Expect = 0.75
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +1
Query: 55 PSRRITPATNCSAPFPTSEPPFPSLP-------NLYPLPLQTDTPSSS 95
PS + +P T S P PTS PP P P PL T +PSSS
Sbjct: 226 PSPQTSPPTATSTPTPTSSPPPPPSPPGRSRSATPPPLAAPTASPSSS 369
>TC223428 similar to UP|Q8VZE1 (Q8VZE1) At2g17250/T23A1.11, partial (22%)
Length = 635
Score = 31.6 bits (70), Expect = 0.98
Identities = 22/49 (44%), Positives = 29/49 (58%)
Frame = +2
Query: 48 LLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSST 96
LL+ + PS R TP+++ S+ P+S PP P P L P T PSSST
Sbjct: 125 LLTTSSNPSSRSTPSSSLSS--PSSLPPPPPPPPL--PPPATTNPSSST 259
>TC206122 weakly similar to PIR|C86473|C86473 arabinogalactan-protein -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(40%)
Length = 797
Score = 31.6 bits (70), Expect = 0.98
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = +3
Query: 55 PSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSST 96
PS +P+T+ AP PT+ P P+ P T PSS T
Sbjct: 153 PSTTPSPSTSAPAPSPTANTPPPAAAPAPATPTPTPAPSSPT 278
>BG510261
Length = 418
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +2
Query: 37 DSSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYP 84
D + STP A A P RR +P P PT PP P+ + P
Sbjct: 272 DLTASTPSSATRSPSTALPRRRRSPTPTSLRPPPTPTPPMPASRSSLP 415
>TC228724 similar to UP|Q9FML2 (Q9FML2) Histone deacetylase, partial (82%)
Length = 1677
Score = 30.8 bits (68), Expect = 1.7
Identities = 23/59 (38%), Positives = 27/59 (44%)
Frame = +2
Query: 38 SSISTPRDAFLLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSST 96
SS +TP A S PSR P + S P TS PS P P+P T S+ST
Sbjct: 218 SSSTTPSTAAWRSTA--PSRPPPPTSAASTPTTTSTSSPPSPPRPSPIPPSLVTSSAST 388
>AW277771 similar to GP|28396175|gb| malonyl-coenzyme A: anthocyanidin
3-O-glucoside-6''-O-malonyltransferase {Pericallis
cruenta}, partial (7%)
Length = 365
Score = 30.8 bits (68), Expect = 1.7
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 70 PTSEPPFPSLPNLYPL--PLQTDTPSSSTIEESRKW 103
PTS PPFPSL + P+ PL TD S+ KW
Sbjct: 326 PTSTPPFPSLLSASPMVKPLPTDVISTFAGFPQPKW 219
>TC204112 homologue to UP|Q9LD28 (Q9LD28) Histone H2A, partial (96%)
Length = 714
Score = 30.8 bits (68), Expect = 1.7
Identities = 28/85 (32%), Positives = 38/85 (43%), Gaps = 8/85 (9%)
Frame = -1
Query: 47 FLLSVLAFPSRRITPATNCS--------APFPTSEPPFPSLPNLYPLPLQTDTPSSSTIE 98
FLLS+ AFP+ T A S AP PT FP+L NL P P+ +E
Sbjct: 315 FLLSLAAFPANSKTSAARYSRTAAR*TGAPAPTRSAYFPALRNLAIRPTGNWRPALLLLE 136
Query: 99 ESRKWFQEVVPALGILLLRLPSLLE 123
+ + AL +L LP++ E
Sbjct: 135 VA------FLAALDPRVLPLPAIDE 79
>AW233767
Length = 318
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Frame = +2
Query: 154 IVFLSQELIAALLVCSFFCLFPVNERYGK----------HLQSINFDELFGSLYDYYSQK 203
+VFL Q ++ ++LVC F + VN RY HL+ +F EL + D+++ K
Sbjct: 53 VVFLYQYIMHSILVCVFLYAYSVNFRYSAEHYDPEVRLGHLKRFSFKELRAAT-DHFNSK 229
>TC220539 weakly similar to UP|Q8S995 (Q8S995) Glucosyltransferase-14,
partial (17%)
Length = 875
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/50 (42%), Positives = 24/50 (48%)
Frame = -3
Query: 47 FLLSVLAFPSRRITPATNCSAPFPTSEPPFPSLPNLYPLPLQTDTPSSST 96
FLLS L+FPS T + F T P F SLP + T TP ST
Sbjct: 189 FLLSSLSFPSSIKTCIAFKTCSFFTKTPLFSSLPQFTGVSTPTLTPILST 40
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.321 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,702,777
Number of Sequences: 63676
Number of extensions: 430144
Number of successful extensions: 3196
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 3089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3178
length of query: 558
length of database: 12,639,632
effective HSP length: 102
effective length of query: 456
effective length of database: 6,144,680
effective search space: 2801974080
effective search space used: 2801974080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0057b.8