BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0057b.6
(396 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC219922 356 9e-99
BM955030 267 5e-72
TC210955 70 1e-12
BE803429 53 3e-07
AI856766 45 4e-05
TC230058 similar to UP|Q750K6 (Q750K6) AGL055Cp, partial (8%) 32 0.50
BG882737 32 0.50
TC232946 similar to GB|AAS67855.2|45550043|AY557340 root hair de... 31 1.1
TC216218 homologue to UP|Q9M7P3 (Q9M7P3) GTP-binding protein, co... 30 1.9
TC217096 homologue to UP|Q8W1S2 (Q8W1S2) ABC transporter-like pr... 30 2.5
TC227730 weakly similar to UP|Q8S3H2 (Q8S3H2) NBS-LRR-Toll resis... 29 3.2
TC227906 similar to UP|Q8LGN7 (Q8LGN7) Multidrug resistance-asso... 29 3.2
BI471508 similar to GP|4587575|gb|A Belongs to PF|01121 Uncharac... 29 3.2
TC227729 29 3.2
TC219029 similar to UP|Q93ZN6 (Q93ZN6) AT5g64840/MXK3_6, partial... 29 4.2
TC217803 similar to UP|Q9AT00 (Q9AT00) At1g65410/T8F5_19, partia... 29 4.2
TC218590 similar to UP|Q9M9Q7 (Q9M9Q7) T15D22.3, partial (55%) 29 4.2
TC208893 similar to UP|O48592 (O48592) GT2 protein, partial (11%) 29 4.2
TC227035 similar to UP|Q9M1H3 (Q9M1H3) ABC transporter-like prot... 29 4.2
TC230886 28 5.5
>TC219922
Length = 789
Score = 356 bits (914), Expect = 9e-99
Identities = 176/220 (80%), Positives = 193/220 (87%)
Frame = +3
Query: 177 HEIMGIQLAVLLASVCHILLVVSEGVHDDCMWHLMLTVDLLKHGIPDPSLLASSHSQSSS 236
HE++GIQLAVLLAS+CHILLVVSEGVHDD +WHLMLTVDLLKHGI DPSL+ SS SQSSS
Sbjct: 3 HELIGIQLAVLLASICHILLVVSEGVHDDSLWHLMLTVDLLKHGISDPSLMTSSLSQSSS 182
Query: 237 SGHEKDNKLSGREYMATPVFVHTKLHDQEFTPKNFVQLRKTLIQYFKPSSFVREHAEHKP 296
SG EKD EYMATPVFVHTKL DQ+FTP NFVQLRK L+QYF+PSSFVRE ++KP
Sbjct: 183 SGLEKDKLPEHEEYMATPVFVHTKLQDQDFTPSNFVQLRKALMQYFRPSSFVRE--QNKP 356
Query: 297 EEHISSSMVHDSPMDSNVPSLFAIPFKKKDENPRAQHGSYISALWKLRDQILSMKSPSFT 356
EEH+SSS+V S MDSN+ +AIP KKKDENP AQH SY+SALWKLRDQILSMKSPSFT
Sbjct: 357 EEHVSSSLVRGSQMDSNLIKFYAIPLKKKDENPSAQHESYVSALWKLRDQILSMKSPSFT 536
Query: 357 RPVSEREWLKNSAKIWEQVKNSPTMLEYCRTLQQSGMFRR 396
RPVSEREWLKNSAKIWEQVKNS T+LEYCRTLQ SGM+RR
Sbjct: 537 RPVSEREWLKNSAKIWEQVKNSATILEYCRTLQHSGMYRR 656
>BM955030
Length = 426
Score = 267 bits (683), Expect = 5e-72
Identities = 133/141 (94%), Positives = 134/141 (94%)
Frame = +2
Query: 14 LAKPGLVTGGPVAGKFGRGAAGEDDSAQHRSRLPSVASLNLLSDSWDFHIDRFLPFLTEN 73
LAKPGLVTGGPVAGKFGRG G+DDS Q RSRLPSVASLNLLSDSWDFHIDRFLPFLTEN
Sbjct: 2 LAKPGLVTGGPVAGKFGRGGGGDDDSPQLRSRLPSVASLNLLSDSWDFHIDRFLPFLTEN 181
Query: 74 TDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRIS 133
TDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFA QSEE RAMARHCSTGIEPRIS
Sbjct: 182 TDFTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFAIQSEETRAMARHCSTGIEPRIS 361
Query: 134 AERIILLDTQPVFSASVLAEM 154
ERIILLDTQPVFSASVLAEM
Sbjct: 362 TERIILLDTQPVFSASVLAEM 424
>TC210955
Length = 690
Score = 70.5 bits (171), Expect = 1e-12
Identities = 39/56 (69%), Positives = 43/56 (76%)
Frame = +3
Query: 206 CMWHLMLTVDLLKHGIPDPSLLASSHSQSSSSGHEKDNKLSGREYMATPVFVHTKL 261
C+ +L VDLLKHGI DPSL+ +S SQSSSSG EKD L EYMATPVFVHTKL
Sbjct: 33 CLNMKVLGVDLLKHGISDPSLM-TS*SQSSSSGLEKDKLLEHEEYMATPVFVHTKL 197
>BE803429
Length = 421
Score = 52.8 bits (125), Expect = 3e-07
Identities = 29/39 (74%), Positives = 31/39 (79%)
Frame = -3
Query: 223 DPSLLASSHSQSSSSGHEKDNKLSGREYMATPVFVHTKL 261
DPSL+ +S SQSSSSG EKD L EYMATPVFVHTKL
Sbjct: 419 DPSLM-TS*SQSSSSGLEKDKLLEHEEYMATPVFVHTKL 306
>AI856766
Length = 181
Score = 45.4 bits (106), Expect = 4e-05
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 372 WEQVKNSPTMLEYCRTLQQSGMFRR 396
WE VK+SPT+LEYCRTLQ SGM+ R
Sbjct: 1 WELVKSSPTILEYCRTLQHSGMYGR 75
>TC230058 similar to UP|Q750K6 (Q750K6) AGL055Cp, partial (8%)
Length = 667
Score = 32.0 bits (71), Expect = 0.50
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Frame = +3
Query: 55 LSDSWDFHIDRFLPFLTENTDFT---VIGVIGPPGVGKSTIMNEL 96
+ + +D + R LP ++ +++ ++G+ GPPG GKST+ +E+
Sbjct: 120 VDELYDALVTRILPLVSVSSNPNHKLLVGLAGPPGAGKSTLAHEV 254
>BG882737
Length = 415
Score = 32.0 bits (71), Expect = 0.50
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +1
Query: 245 LSGREYMATPVFVHTKL 261
L EYMATPVFVHTKL
Sbjct: 7 LEHEEYMATPVFVHTKL 57
>TC232946 similar to GB|AAS67855.2|45550043|AY557340 root hair defective 3
GTP-binding protein {Triticum aestivum;} , partial (26%)
Length = 756
Score = 30.8 bits (68), Expect = 1.1
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +3
Query: 76 FTVIGVIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEP 130
+ V+ ++GP GKST+MN L+ +S + F +S+ + + GIEP
Sbjct: 231 YAVVAIMGPQSSGKSTLMNHLF---HTSFREMDAFRGRSQTTKGIWIAKCVGIEP 386
>TC216218 homologue to UP|Q9M7P3 (Q9M7P3) GTP-binding protein, complete
Length = 1545
Score = 30.0 bits (66), Expect = 1.9
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 42 HRSRLPSVASLNLLS-DSWDFHIDRFLPFLTENTDFTVIGVIGPPGVGKSTIMNEL 96
HR+R PS + S S + +R P L + IG++G P VGKST+ N L
Sbjct: 42 HRNRNPSPQKMPPKSAKSKEAPAER--PILGRFSSHLKIGIVGLPNVGKSTLFNTL 203
>TC217096 homologue to UP|Q8W1S2 (Q8W1S2) ABC transporter-like protein,
complete
Length = 2478
Score = 29.6 bits (65), Expect = 2.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 68 PFLTENTDFTV-----IGVIGPPGVGKSTIMNELYGFDSSSPG 105
P L +N +F + I ++GP G+GKSTI+ + G S G
Sbjct: 1662 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGDLQPSSG 1790
>TC227730 weakly similar to UP|Q8S3H2 (Q8S3H2) NBS-LRR-Toll resistance gene
analog protein (Fragment), partial (47%)
Length = 816
Score = 29.3 bits (64), Expect = 3.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 73 NTDFTVIGVIGPPGVGKSTIMNELY 97
N D V+G+ G G+GKST+ LY
Sbjct: 417 NDDVRVVGITGMGGIGKSTLGQALY 491
>TC227906 similar to UP|Q8LGN7 (Q8LGN7) Multidrug resistance-associated
protein MRP1 (Fragment), partial (49%)
Length = 1394
Score = 29.3 bits (64), Expect = 3.2
Identities = 17/52 (32%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
Frame = +2
Query: 61 FHIDRFLPFLTENTDFTV-----IGVIGPPGVGKSTIMNELYGFDSSSPGML 107
F ID P + + T+ IGV+G G GKST++ L+ S G +
Sbjct: 452 FGIDANTPLVLKGISLTIEAGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKI 607
>BI471508 similar to GP|4587575|gb|A Belongs to PF|01121 Uncharacterized
protein family UPF0038 containing ATP/GTP binding
domain. ESTs, partial (20%)
Length = 421
Score = 29.3 bits (64), Expect = 3.2
Identities = 10/19 (52%), Positives = 16/19 (83%)
Frame = +3
Query: 78 VIGVIGPPGVGKSTIMNEL 96
++G+ GPPG GKST+ +E+
Sbjct: 258 LVGLAGPPGAGKSTLAHEV 314
>TC227729
Length = 1391
Score = 29.3 bits (64), Expect = 3.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 73 NTDFTVIGVIGPPGVGKSTIMNELY 97
N D V+G+ G G+GKST+ LY
Sbjct: 761 NDDVRVVGITGMGGIGKSTLGRALY 835
>TC219029 similar to UP|Q93ZN6 (Q93ZN6) AT5g64840/MXK3_6, partial (34%)
Length = 889
Score = 28.9 bits (63), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 80 GVIGPPGVGKSTIMNELYGFDSSSPG 105
G+IGP G GKST++ + G + + G
Sbjct: 15 GIIGPNGCGKSTLLKLIMGLEKPTGG 92
>TC217803 similar to UP|Q9AT00 (Q9AT00) At1g65410/T8F5_19, partial (81%)
Length = 1563
Score = 28.9 bits (63), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 79 IGVIGPPGVGKSTIMNELYGFDSSSPG 105
+G+IGP G GKST++ + G + G
Sbjct: 426 VGIIGPSGTGKSTVLKIIAGLLAPDKG 506
>TC218590 similar to UP|Q9M9Q7 (Q9M9Q7) T15D22.3, partial (55%)
Length = 604
Score = 28.9 bits (63), Expect = 4.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 191 VCHILLVVSEGVHDDCMWHLMLTVDLLKH 219
VCHIL ++ C+W L LT+++L+H
Sbjct: 167 VCHILRMI-------CIWRLPLTLEVLRH 102
>TC208893 similar to UP|O48592 (O48592) GT2 protein, partial (11%)
Length = 853
Score = 28.9 bits (63), Expect = 4.2
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Frame = +3
Query: 293 EHKPEEHISSSMVHDS--PMDSNVPSLFAIPFKKKDENPRAQHGSY---ISALWKLRDQI 347
EH P ++S H++ P++SN S + K P A + I W RD++
Sbjct: 3 EHNPSSSLNS---HNNIIPLESNSVSTY----KPTSTTPMASSENSKDDIGRRWP-RDEV 158
Query: 348 LSMKSPSFTRPVSEREWLKNSAKIWEQVKNSPTMLEYCRTLQQ 390
L++ + T S E N +WE++ + L Y R+ ++
Sbjct: 159 LALINLRCTSLSSNEEKEGNKGPLWERISQGMSALGYKRSAKR 287
>TC227035 similar to UP|Q9M1H3 (Q9M1H3) ABC transporter-like protein
(At3g54540), partial (56%)
Length = 1561
Score = 28.9 bits (63), Expect = 4.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 77 TVIGVIGPPGVGKSTIMNELYG 98
T + ++GP G GKST++N L G
Sbjct: 629 TRVAIVGPNGAGKSTLLNLLAG 694
>TC230886
Length = 671
Score = 28.5 bits (62), Expect = 5.5
Identities = 17/52 (32%), Positives = 24/52 (45%)
Frame = +1
Query: 225 SLLASSHSQSSSSGHEKDNKLSGREYMATPVFVHTKLHDQEFTPKNFVQLRK 276
S+ +S+H + +G D L GRE A P KLH P N + R+
Sbjct: 55 SIGSSTHRDGARAGERSDGVLDGREARALP-----KLHGSLLRPHNAPKRRQ 195
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,530,776
Number of Sequences: 63676
Number of extensions: 251596
Number of successful extensions: 1428
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of query: 396
length of database: 12,639,632
effective HSP length: 99
effective length of query: 297
effective length of database: 6,335,708
effective search space: 1881705276
effective search space used: 1881705276
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0057b.6