
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0056.1
(153 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224569 weakly similar to UP|Q8L9L8 (Q8L9L8) Pollen allergen-li... 243 3e-65
TC224579 weakly similar to UP|Q8L9L8 (Q8L9L8) Pollen allergen-li... 240 2e-64
TC208618 weakly similar to UP|Q9SWS4 (Q9SWS4) Ripening related p... 89 8e-19
TC215953 UP|Q9SMF5 (Q9SMF5) Major latex protein homolog, complete 87 4e-18
TC229286 weakly similar to UP|Q9SXL8 (Q9SXL8) Csf-2 protein, par... 82 8e-17
TC208077 weakly similar to UP|Q9SXL8 (Q9SXL8) Csf-2 protein, par... 80 5e-16
TC224720 weakly similar to UP|Q9AXU0 (Q9AXU0) Major latex-like p... 74 2e-14
TC217400 weakly similar to UP|Q9SWS4 (Q9SWS4) Ripening related p... 70 5e-13
AW396487 67 3e-12
CD390579 homologue to SP|Q05758|ILV5_ Ketol-acid reductoisomeras... 60 5e-10
TC204835 weakly similar to UP|O23747 (O23747) Pollen allergen, B... 59 1e-09
TC225172 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein,... 56 6e-09
TC225171 UP|Q9SWS4 (Q9SWS4) Ripening related protein, complete 56 8e-09
TC225173 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein,... 52 1e-07
TC228057 50 4e-07
BF008763 similar to GP|5739198|gb| ripening related protein {Gly... 48 2e-06
TC225174 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein,... 47 3e-06
TC212192 similar to UP|Q9SSM7 (Q9SSM7) F3N23.20 protein, partial... 47 5e-06
TC222023 45 1e-05
TC225175 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein,... 45 1e-05
>TC224569 weakly similar to UP|Q8L9L8 (Q8L9L8) Pollen allergen-like protein,
partial (76%)
Length = 781
Score = 243 bits (620), Expect = 3e-65
Identities = 118/153 (77%), Positives = 131/153 (85%)
Frame = +3
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITY 60
M TRGKLEVDIDLKSNADKYW TLR+ST IFPKAFPHDYKSIE+LEGDGK+ GS+RHI+Y
Sbjct: 78 MATRGKLEVDIDLKSNADKYWQTLRNSTEIFPKAFPHDYKSIEVLEGDGKSPGSIRHISY 257
Query: 61 AEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAE 120
EGSPLVKSS EKI+A D+EKK VSY +IDGELLQ+YK FKG ISV +G+G EVKWSA
Sbjct: 258 GEGSPLVKSSFEKIEAVDEEKKVVSYTIIDGELLQHYKTFKGDISVTPIGDGCEVKWSAV 437
Query: 121 YEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQA 153
YEK S DI DP++VKDFAVKNFLEVD YV A
Sbjct: 438 YEKVSHDISDPTLVKDFAVKNFLEVDAYVQANA 536
>TC224579 weakly similar to UP|Q8L9L8 (Q8L9L8) Pollen allergen-like protein,
partial (76%)
Length = 712
Score = 240 bits (612), Expect = 2e-64
Identities = 116/153 (75%), Positives = 131/153 (84%)
Frame = +2
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITY 60
M TRGKLEVD+DLKSNADKYW TLR+ST IFPKAFP+DYKSIE+LEGDGK+ GS+RHI+Y
Sbjct: 68 MATRGKLEVDVDLKSNADKYWQTLRNSTEIFPKAFPNDYKSIEVLEGDGKSPGSIRHISY 247
Query: 61 AEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAE 120
EGSPLVKSS EKI+A D+EKK VSY +IDGELLQ+YK FKG ISV VG+G EVKWSA
Sbjct: 248 GEGSPLVKSSFEKIEAVDEEKKVVSYTIIDGELLQHYKTFKGDISVTPVGDGCEVKWSAV 427
Query: 121 YEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQA 153
YEK S D+ DP++VKDFAVKNFLEVD YV A
Sbjct: 428 YEKVSHDVSDPTLVKDFAVKNFLEVDAYVQANA 526
>TC208618 weakly similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein,
partial (26%)
Length = 808
Score = 89.0 bits (219), Expect = 8e-19
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Frame = +3
Query: 5 GKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITYA-EG 63
GK+E ++++++ A K++ R P ++ EGD + GSV+H + EG
Sbjct: 66 GKVETEVEIQAPAAKFYHVFRKQIHHVPNMSTERVHGAKVHEGDWENIGSVKHWDFTIEG 245
Query: 64 SPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAEYEK 123
S+ EKI+A DD+ K +SY++ DGE+ + YK +GT+ VI G VKW+ EYEK
Sbjct: 246 RKT--SAKEKIEAIDDDNKIISYSLFDGEISEGYKSLRGTLQVINKENGGIVKWTFEYEK 419
Query: 124 ASTDI--PDPSVVKDFAVKNFLEVDEYVLQ 151
+I P DFA K ++D+++++
Sbjct: 420 LQENITAASPDSFLDFAAKVTKDIDDHLVK 509
>TC215953 UP|Q9SMF5 (Q9SMF5) Major latex protein homolog, complete
Length = 977
Score = 86.7 bits (213), Expect = 4e-18
Identities = 48/153 (31%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Frame = +1
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTI-FPKAFPHDYKSIEILEGDGKAAGSVRHIT 59
M L +I++K++AD ++ TL+ PH +E+ EG+ +G+++ +T
Sbjct: 46 MSQPDSLVAEIEVKTSADHFYDTLKGKKQHRIHDVAPHHIHKVEVHEGEWDKSGNIKVLT 225
Query: 60 YAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVG-EGSEVKWS 118
+A+G V++ E++D DDE K ++Y +++G +L+YYK +K + V+ G E S VKW+
Sbjct: 226 FADGDT-VETLKERVDF-DDENKKITYTILEGVMLKYYKSYKVIVHVLPKGDEHSLVKWT 399
Query: 119 AEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQ 151
YEK P+P+ KD VK V+ ++++
Sbjct: 400 FLYEKVDHTAPEPTKYKDLVVKLTKNVEAHLVE 498
>TC229286 weakly similar to UP|Q9SXL8 (Q9SXL8) Csf-2 protein, partial (34%)
Length = 759
Score = 82.4 bits (202), Expect = 8e-17
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Frame = +2
Query: 6 KLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITYA-EGS 64
KLE ++ +K++A++++ L T PK FP S+EIL+G GS+ Y EG
Sbjct: 47 KLEANVSIKASAEQFYDVLCHKTHQIPKIFPEKALSVEILKGAWGTEGSIISWNYLYEGK 226
Query: 65 PLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAEYEKA 124
V + E I+ D + K +S+ VI+G++L +YK FK + V +GS V+ EYEK
Sbjct: 227 VCV--AKEVIEGIDKKNKKMSFKVIEGDVLGHYKSFKFIMQVTPKEKGSVVQCVVEYEKQ 400
Query: 125 STDIPDPSVVKDFAVKNFLEVDEYVLQ 151
IPDP + V+ +++ Y+ Q
Sbjct: 401 KDHIPDPHTLLQSTVELCKKINAYLTQ 481
>TC208077 weakly similar to UP|Q9SXL8 (Q9SXL8) Csf-2 protein, partial (72%)
Length = 616
Score = 79.7 bits (195), Expect = 5e-16
Identities = 47/147 (31%), Positives = 79/147 (52%), Gaps = 1/147 (0%)
Frame = +1
Query: 6 KLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITYA-EGS 64
K+E ++ +K++AD++ L + T FP +S+EI +G+ GSV Y EG
Sbjct: 49 KVEANVHIKASADQFHNVLCNRTHHIANIFPGKVQSVEIHKGEWGTEGSVISWNYLHEGK 228
Query: 65 PLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAEYEKA 124
V + E ++ D + +++ VI+G+LL +YK FK + V +GS V W EYEK
Sbjct: 229 VCV--AKEMVEGIDMKNNKMTFKVIEGDLLGHYKSFKFLLQVTPKEKGSVVNWVLEYEKQ 402
Query: 125 STDIPDPSVVKDFAVKNFLEVDEYVLQ 151
+ + PDP + + V+ E+ Y+ Q
Sbjct: 403 NDNTPDPYTLLELTVEMSKEIGAYLSQ 483
>TC224720 weakly similar to UP|Q9AXU0 (Q9AXU0) Major latex-like protein,
partial (92%)
Length = 873
Score = 74.3 bits (181), Expect = 2e-14
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Frame = +2
Query: 6 KLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITYA-EGS 64
K+E + +K++A++++ + P + +S+E+ +G+ GS+ Y EG+
Sbjct: 167 KVETSLQIKASAEQFYDVFCNKPHTIANISPENIQSVEVHKGEWGKEGSIVSWNYLHEGT 346
Query: 65 PLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEVKWSAEYEKA 124
V + + ++ D E ++ VI+G++L YK FK + V G+GS V W+ EYEK
Sbjct: 347 VCV--AKQVLEGIDKENNKMTMKVIEGDVLGLYKSFKSNLQVTPKGKGSVVLWAMEYEKQ 520
Query: 125 STDIPDPSVVKDFAVKNFLEVDEYVLQ 151
IPD + AV ++D Y+ Q
Sbjct: 521 EDHIPDAHTLLQLAVVVSKKIDAYLTQ 601
>TC217400 weakly similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein,
partial (98%)
Length = 800
Score = 69.7 bits (169), Expect = 5e-13
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Frame = +1
Query: 5 GKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDG--KAAGSVRHITYAE 62
GKL ++ +K++A K W L + + ++ +GD SV+H TY
Sbjct: 76 GKLSTELGVKASATK-WFNLLTTQLHHVQNLCERVHETKLHDGDDWHGVGNSVKHWTYVI 252
Query: 63 GSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGE-GSEVKWSAEY 121
V + E I+A D+E KT+ + + G++ Q+YK FK V + G+ VKW+ EY
Sbjct: 253 DGK-VHTCQESIEAIDEENKTIKFMLFGGDISQHYKSFKLIFEVTDKNDGGAAVKWTLEY 429
Query: 122 EKASTDIPDPSVVKDFAVKNFLEVDEYVLQ 151
EK +I P D+ K+ E+D Y+++
Sbjct: 430 EKIKENIDPPHGYMDYFDKSTKEMDAYLVK 519
>AW396487
Length = 427
Score = 67.4 bits (163), Expect = 3e-12
Identities = 31/45 (68%), Positives = 36/45 (79%)
Frame = +2
Query: 109 VGEGSEVKWSAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQA 153
+G+G +VKWSA YEK S DI DP++VKDFAVKNFLEVD YV A
Sbjct: 227 IGDGCQVKWSAVYEKVSHDISDPTLVKDFAVKNFLEVDAYVQANA 361
>CD390579 homologue to SP|Q05758|ILV5_ Ketol-acid reductoisomerase
chloroplast precursor (EC 1.1.1.86), partial (4%)
Length = 600
Score = 59.7 bits (143), Expect = 5e-10
Identities = 28/40 (70%), Positives = 31/40 (77%)
Frame = -1
Query: 114 EVKWSAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQQA 153
EVKWSA YEK S D+ DP++VKD AVKNFLEVD YV A
Sbjct: 597 EVKWSAVYEKVSHDVSDPTLVKDLAVKNFLEVDAYVQANA 478
>TC204835 weakly similar to UP|O23747 (O23747) Pollen allergen, Betv1
(Fragment), partial (76%)
Length = 831
Score = 58.5 bits (140), Expect = 1e-09
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = +1
Query: 15 SNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAGSVRHITYAEGSPLVKSSTEKI 74
S A Y + D++ +FPKA P+ KS+E +EGDG G+++ +T AEG VK +
Sbjct: 163 SAAKLYKAIVLDASNVFPKALPNFIKSVETIEGDG-GPGTIKKLTLAEGLGYVK---HHV 330
Query: 75 DAADDEKKTVSYAVIDGELL-QYYKKFKGTISVIAVGE-GSEVKWSAEY 121
DA D E +Y+VI+G L + +K ++A + GS VK +++Y
Sbjct: 331 DAIDTENYVYNYSVIEGSALSEPLEKICYEYKLVATPDGGSIVKSTSKY 477
>TC225172 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein, complete
Length = 971
Score = 56.2 bits (134), Expect = 6e-09
Identities = 38/153 (24%), Positives = 73/153 (46%), Gaps = 2/153 (1%)
Frame = +1
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEG-DGKAAGSVRHIT 59
M GK+ +I + + A K W L + + ++ +G D +V+H T
Sbjct: 271 MSLAGKITTEIGVHATAAK-WFNLFATQLHHVQNLTDRVHGTKLHQGEDWHHNETVKHWT 447
Query: 60 YAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSE-VKWS 118
Y + E I++ D++ KT++Y + G++ YKKFK T I +G +KW+
Sbjct: 448 YTIDGKAT-TCLESIESIDEQNKTITYKLFSGDIDHKYKKFKFTFQAIDKDQGGAFIKWT 624
Query: 119 AEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQ 151
EYE+ + ++ P ++ K ++D ++L+
Sbjct: 625 VEYERLAEEVDPPYGYIEYLHKCTKDIDVHLLK 723
>TC225171 UP|Q9SWS4 (Q9SWS4) Ripening related protein, complete
Length = 782
Score = 55.8 bits (133), Expect = 8e-09
Identities = 39/153 (25%), Positives = 72/153 (46%), Gaps = 2/153 (1%)
Frame = +1
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEG-DGKAAGSVRHIT 59
M GK+ +I +++ A K W L + + E+ G D SV+H T
Sbjct: 76 MSLAGKISSEIGVQATAAK-WFNLFTTQLHHVQNLTDRIHGTELHHGEDWHHNESVKHWT 252
Query: 60 YAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVI-AVGEGSEVKWS 118
Y V + E I++ D+E KT++Y + DG++ +K FK I + + +KW+
Sbjct: 253 YTIDGK-VTTCKESIESVDEENKTINYKLFDGDIDNQFKVFKLIFQAIDKENDSAIIKWT 429
Query: 119 AEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQ 151
EYE+ ++ P ++ K ++D ++L+
Sbjct: 430 IEYERIGEEVDPPYGYIEYVHKCTKDIDAHLLK 528
>TC225173 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein, partial
(96%)
Length = 784
Score = 51.6 bits (122), Expect = 1e-07
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Frame = +2
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEG-DGKAAGSVRHIT 59
M GK+ +I + + A K W L + + ++ +G D +V+H T
Sbjct: 65 MSLAGKITTEIGVHATATK-WFNLFATQLHHVQNLTDRVHGTKLHQGEDWHHNETVKHWT 241
Query: 60 YAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGE--GSEVKW 117
Y V + E I++ D++ KT++Y + G++ YK FK I + G+ +KW
Sbjct: 242 YTIDGK-VTTCLESIESIDEQSKTITYKLFSGDIDHNYKNFKFIFQAIDDNDHGGTIIKW 418
Query: 118 SAEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQ 151
+ EYE+ ++ P ++ K ++D ++L+
Sbjct: 419 TVEYERLREEVDPPYGHIEYLHKCTKDIDGHLLK 520
>TC228057
Length = 774
Score = 50.1 bits (118), Expect = 4e-07
Identities = 27/105 (25%), Positives = 51/105 (47%)
Frame = +3
Query: 32 PKAFPHDYKSIEILEGDGKAAGSVRHITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDG 91
P+A+ H KS + EG A GS R + G P +STE++D DD++ + + ++ G
Sbjct: 252 PQAYKHFIKSCHVKEGFQLAVGSTRDVHVISGLPAA-TSTERLDLLDDDRHVIGFTIVGG 428
Query: 92 ELLQYYKKFKGTISVIAVGEGSEVKWSAEYEKASTDIPDPSVVKD 136
+ + ++ SV ++ W+ E D+P+ + +D
Sbjct: 429 D--HRLRNYRSVTSVHGFERDGKI-WTVVLESYVVDVPEGNTEED 554
>BF008763 similar to GP|5739198|gb| ripening related protein {Glycine max},
partial (70%)
Length = 409
Score = 48.1 bits (113), Expect = 2e-06
Identities = 25/76 (32%), Positives = 42/76 (54%), Gaps = 1/76 (1%)
Frame = +2
Query: 54 SVRHITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEG- 112
+V H TY + E I++ D++ KT++Y + G++ YKKFK T I +G
Sbjct: 116 TVNHWTYTIDGKAT-TCLESIESIDEQNKTITYKLFSGDIDHNYKKFKFTFQAIDKDQGC 292
Query: 113 SEVKWSAEYEKASTDI 128
+ + W+AEYE + D+
Sbjct: 293 AXI*WTAEYEMLADDV 340
>TC225174 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein, complete
Length = 834
Score = 47.4 bits (111), Expect = 3e-06
Identities = 36/153 (23%), Positives = 68/153 (43%), Gaps = 2/153 (1%)
Frame = +3
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAG-SVRHIT 59
M GK+ ++I + ++A K W L + + ++ GD S++H T
Sbjct: 72 MSLAGKISIEIGVHASAAK-WFNLFATQLHHVQNLTERVHETKLHHGDDWHHNESIKHWT 248
Query: 60 YAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSE-VKWS 118
V + E I++ D+ KT++Y + ++ YK FK I G +KW+
Sbjct: 249 CTIDGK-VTTYHESIESVDEPNKTITYKIFGEDIDHQYKVFKVIFQAIHKDHGGAFIKWT 425
Query: 119 AEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQ 151
EYE+ ++ P ++ K +VD ++L+
Sbjct: 426 IEYERVGEEVDLPFGFIEYLNKGSRDVDGHLLK 524
>TC212192 similar to UP|Q9SSM7 (Q9SSM7) F3N23.20 protein, partial (77%)
Length = 1027
Score = 46.6 bits (109), Expect = 5e-06
Identities = 31/105 (29%), Positives = 53/105 (49%)
Frame = +3
Query: 32 PKAFPHDYKSIEILEGDGKAAGSVRHITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDG 91
P+ + H K + GDG GS+R +T G P +STE+++ DD+K +S+ V+ G
Sbjct: 342 PQKYKHFIKGCN-MRGDG-GVGSIREVTVVSGLP-ASTSTERLEILDDDKHVLSFRVVGG 512
Query: 92 ELLQYYKKFKGTISVIAVGEGSEVKWSAEYEKASTDIPDPSVVKD 136
E K ++ SV + +V ++ E DIP+ + +D
Sbjct: 513 E--HRLKNYRSVTSVNEFNKEGKV-YTIVLESYIVDIPEGNTEED 638
>TC222023
Length = 772
Score = 45.4 bits (106), Expect = 1e-05
Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 4/84 (4%)
Frame = +1
Query: 36 PHDYK----SIEILEGDGKAAGSVRHITYAEGSPLVKSSTEKIDAADDEKKTVSYAVIDG 91
PH YK S ++ G G G+VR + G P + STE+++ DDE+ +S++V+ G
Sbjct: 214 PHPYKNFVKSCHVITGHGIRVGAVREVRVVSGLP-AEMSTERLEILDDERHVISFSVVGG 390
Query: 92 ELLQYYKKFKGTISVIAVGEGSEV 115
+ + ++ ++ A G G+ V
Sbjct: 391 D--HRLRNYRSVTTLHANGNGTLV 456
>TC225175 similar to UP|Q9SWS4 (Q9SWS4) Ripening related protein, complete
Length = 784
Score = 45.1 bits (105), Expect = 1e-05
Identities = 35/153 (22%), Positives = 65/153 (41%), Gaps = 2/153 (1%)
Frame = +2
Query: 1 MGTRGKLEVDIDLKSNADKYWLTLRDSTTIFPKAFPHDYKSIEILEGDGKAAG-SVRHIT 59
M GK+ +I + + A K W L + + ++ GD S++H T
Sbjct: 56 MSLVGKISTEIGVHATAAK-WFNLFATQLHHVQNLTDRVHETKLHHGDDWHHNESIKHWT 232
Query: 60 YAEGSPLVKSSTEKIDAADDEKKTVSYAVIDGELLQYYKKFKGTISVIAVGEGSEV-KWS 118
+ + E I++ D+ KT++Y + G++ YK FK I G + KW+
Sbjct: 233 CTIDGKIT-TCLESIESVDEPNKTITYKLFGGDIGHKYKVFKLIFQAIDTDHGGVIIKWT 409
Query: 119 AEYEKASTDIPDPSVVKDFAVKNFLEVDEYVLQ 151
EYEK ++ P ++ ++D +L+
Sbjct: 410 VEYEKIDENVDPPYGYIEYLHSGSKQIDGNLLK 508
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,117,856
Number of Sequences: 63676
Number of extensions: 48813
Number of successful extensions: 206
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of query: 153
length of database: 12,639,632
effective HSP length: 89
effective length of query: 64
effective length of database: 6,972,468
effective search space: 446237952
effective search space used: 446237952
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0056.1