BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052b.11
(434 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205439 similar to UP|Q8K0Y6 (Q8K0Y6) Tulp1 protein, partial (4%) 510 e-145
TC206473 similar to GB|AAQ06244.1|33320973|AF487271 tubby-like p... 461 e-130
TC215259 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, par... 425 e-119
TC228691 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, par... 414 e-116
TC207090 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, parti... 409 e-114
TC215258 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, par... 387 e-108
TC204450 homologue to GB|AAM18187.1|33413451|AY092403 tubby-like... 357 4e-99
TC205440 similar to UP|TUB_HUMAN (P50607) Tubby protein homolog,... 352 2e-97
TC205438 similar to UP|TUL1_HUMAN (O00294) Tubby related protein... 316 1e-86
TC218981 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, parti... 285 2e-77
TC207400 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, parti... 239 2e-63
TC206472 similar to GB|AAP13398.1|30023730|BT006290 At1g25280 {A... 236 1e-62
BE659346 223 1e-58
CA800259 199 2e-51
TC209398 similar to GB|AAP13398.1|30023730|BT006290 At1g25280 {A... 194 7e-50
BE822877 184 9e-47
TC220558 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, parti... 163 2e-40
BI970616 similar to GP|7635492|emb tubby-like protein {Cicer ari... 160 1e-39
TC207399 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, parti... 148 5e-36
TC215257 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, par... 91 2e-35
>TC205439 similar to UP|Q8K0Y6 (Q8K0Y6) Tulp1 protein, partial (4%)
Length = 1017
Score = 510 bits (1314), Expect = e-145
Identities = 253/278 (91%), Positives = 263/278 (94%)
Frame = +1
Query: 1 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPEL 60
MSFRSIVR+VRDGFGSLSRRSF+V LPGH+R KSRS VHEL DQP VIQ+SRWASLPPEL
Sbjct: 187 MSFRSIVREVRDGFGSLSRRSFEVRLPGHNRGKSRSLVHELQDQPPVIQNSRWASLPPEL 366
Query: 61 LRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYR 120
LRDVI RLE +ES WPGRKHVVACAAVCKSWREMCKEIV SPEFCGKITFPVSLKQPG+R
Sbjct: 367 LRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVNSPEFCGKITFPVSLKQPGHR 546
Query: 121 DGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISR 180
DGPIQCFIKRDKSKLTYHLFL LSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISR
Sbjct: 547 DGPIQCFIKRDKSKLTYHLFLGLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISR 726
Query: 181 SSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQV 240
SSSTYIGKLRSNFLGTKFIIYDTQPPYNNA LSPPGRSRRF SKKVSPKVPSGSYNIAQV
Sbjct: 727 SSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRF-SKKVSPKVPSGSYNIAQV 903
Query: 241 TYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPE 278
TYELNVLGTRGPRRMNCTM+SIPASS++ G VPG+PE
Sbjct: 904 TYELNVLGTRGPRRMNCTMYSIPASSMEPNGVVPGQPE 1017
>TC206473 similar to GB|AAQ06244.1|33320973|AF487271 tubby-like protein
TULP10 {Arabidopsis thaliana;} , partial (51%)
Length = 1645
Score = 461 bits (1187), Expect = e-130
Identities = 239/297 (80%), Positives = 263/297 (88%), Gaps = 5/297 (1%)
Frame = +2
Query: 143 LSPA-LLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIY 201
LSPA LLVENGKFLLSAKRTRRTT TEY+ISMDADNISRSS+TYIGKLRSNFLGTKFIIY
Sbjct: 200 LSPAALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIY 379
Query: 202 DTQPPYNNAQLSPPGR---SRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCT 258
DTQPPY++A + PPG SRRF SKKVSPKVPSGSYNIAQVTYELNVLGTRGPR+M+C
Sbjct: 380 DTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCV 559
Query: 259 MHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEE 318
MHSIPAS+LD GG+VPG+PELLPR+LEDSFRSISF++S+D+S EFSS+RFS+I +
Sbjct: 560 MHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDHSIEFSSSRFSEI--GESCI 733
Query: 319 EEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTG 378
E+++GK RPLVLKNK PRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPA+
Sbjct: 734 EDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAA-------- 889
Query: 379 TGAAPPSQP-PSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
GA PSQP P + DKIILQFGKVGKDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 890 -GAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 1057
Score = 31.6 bits (70), Expect = 0.73
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +3
Query: 130 RDKSKLTYHLFLCLSPA-----LLVENGKFLLSAKRTRRTTCT 167
RDKS LTYHLFL + A L +EN FLL + + T T
Sbjct: 156 RDKSNLTYHLFLNVL*ALQLC*LKMENSSFLLRGQGEQLTLST 284
>TC215259 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, partial (85%)
Length = 1968
Score = 425 bits (1092), Expect = e-119
Identities = 222/411 (54%), Positives = 292/411 (71%), Gaps = 7/411 (1%)
Frame = +2
Query: 31 RSKSRSSVHELHDQPLV-------IQSSRWASLPPELLRDVIKRLETNESAWPGRKHVVA 83
RS+S+ V E V ++ S WA++P ELLR+V+ R+E +E WP RK VV+
Sbjct: 152 RSRSQRVVQEQEAAECVGVVVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVS 331
Query: 84 CAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCL 143
CA VC+SWR + K+IV +PE KITFP+S+KQPG R+ ++CFIKR++S TY+LFL L
Sbjct: 332 CAGVCRSWRHITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSL 511
Query: 144 SPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDT 203
+ + L E+GKFLL+A++ RR TCT+YIIS+DAD++S+ S++Y+GKLRSNFLGTKF IYD+
Sbjct: 512 T-STLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDS 688
Query: 204 QPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIP 263
Q P+ A++ +R N K+VSPKVP+G+Y +A ++YELNVLG+RGPRRM+C M SIP
Sbjct: 689 QLPHTGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIP 868
Query: 264 ASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEG 323
A++++ GG P + E + D F S F RS N E S +G ++++G
Sbjct: 869 ATAIEPGGVAPTQTEFSLNNI-DMFPSFPFFRSKSNRAENSM--------SGPLVDQKDG 1021
Query: 324 KERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAP 383
LVLKNK+PRWHEQLQCWCLNF GRVT+ASVKNFQL+A+ A G A P
Sbjct: 1022M---LVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVAS---AENGPAGP------- 1162
Query: 384 PSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
+ DKIILQFGKVGKD+FTMDYRYP+SAFQAFAICL+SFDTK+ACE
Sbjct: 1163------EHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 1297
>TC228691 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, partial (89%)
Length = 1397
Score = 414 bits (1063), Expect = e-116
Identities = 213/387 (55%), Positives = 277/387 (71%)
Frame = +3
Query: 48 IQSSRWASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGK 107
++ S WA++PPELLRDV+ R+E +E +WP +KHVVACA VC+SWRE+ KEIV SP+ GK
Sbjct: 42 LKQSCWANMPPELLRDVLMRIEASEDSWPAQKHVVACAGVCRSWREIMKEIVKSPQLSGK 221
Query: 108 ITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCT 167
+TFP+SLKQPG RD +QC+IKR++S TY+LFL L+ A + GKFLLSA++ RR T T
Sbjct: 222 LTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLFLGLNQAS-TDEGKFLLSARKCRRATHT 398
Query: 168 EYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVS 227
+YIIS++ D++SR SSTYIGKLRSNFLGTKF +YD PP A+++ +R + K+VS
Sbjct: 399 DYIISLNCDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVS 578
Query: 228 PKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDS 287
P+VP+G+Y IA V+Y+LNVLG+RGPR M C M +IPAS+++ GG P + + L + D+
Sbjct: 579 PRVPAGNYPIAHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRI-DT 755
Query: 288 FRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLN 347
SI F RS ST + + E LVL+NKSPRWHE LQCWCLN
Sbjct: 756 SPSIPFFRS--KSTRMDNLPTVPLTCQ---------NEGTLVLRNKSPRWHEHLQCWCLN 902
Query: 348 FRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFT 407
F GRVTVASVKNFQL+A+ + G + +Q + +ILQFGKVGKD+FT
Sbjct: 903 FNGRVTVASVKNFQLVASPK-----------NGVSEQAQ-----ENVILQFGKVGKDVFT 1034
Query: 408 MDYRYPLSAFQAFAICLTSFDTKLACE 434
MDY+YP+SAFQAFAICL+SFDTK+ACE
Sbjct: 1035MDYQYPISAFQAFAICLSSFDTKIACE 1115
>TC207090 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (73%)
Length = 2133
Score = 409 bits (1050), Expect = e-114
Identities = 223/460 (48%), Positives = 292/460 (63%), Gaps = 26/460 (5%)
Frame = +2
Query: 1 MSFRSIVRDVRD---GFGSLSRRSFDV----------------ILPGHSRSKSRSSVHEL 41
M FRSIVR++++ G ++ RR + + P S S S SS
Sbjct: 563 MPFRSIVRELKEIGEGISNMYRRGGEAKHVHRHGKSHIAPECSLPPPPSSSSSSSSSSSW 742
Query: 42 HDQPLVIQSSRWASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGS 101
SRWA+LPPELL D+I+RLE +E++WP R+ +VACA+VCK WRE+ K++V +
Sbjct: 743 Q--------SRWANLPPELLLDIIQRLEASETSWPARRALVACASVCKLWREITKDVVKT 898
Query: 102 PEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRT 161
PE CG ITFP+SLKQPG RD PIQCFI+R++ TY L+L LSPAL + K LL+AK+
Sbjct: 899 PEQCGFITFPISLKQPGPRDSPIQCFIRRERMTSTYCLYLGLSPALSGDMSKLLLAAKKI 1078
Query: 162 RRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRF 221
RR TCTE+IIS+ +D+ S +S+TY+GKLRSNFLGTKF I D +P + + +R
Sbjct: 1079RRATCTEFIISLVSDDFSWASNTYVGKLRSNFLGTKFTILDGEPAHETSLPLNCKLQQRV 1258
Query: 222 NSKKVSPK--VPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPEL 279
+ K+V P + +Y +A V+YELNVL TRGPRRM C MH IP ++ GG+ P +
Sbjct: 1259HLKQVLPNKVAAAANYKVATVSYELNVLRTRGPRRMRCMMHLIPIFAIQEGGNAPTPLKF 1438
Query: 280 LPRALEDSFRSISFARSIDNSTEFSSARFSDII-----GAGNEEEEEEGKERPLVLKNKS 334
L D + + +T S + +++ G N E + PLVLKNK+
Sbjct: 1439TTNYLND--HASTTTEHASTTTPDSKGKKPEVVEFDSTGTANTPESIQRAREPLVLKNKA 1612
Query: 335 PRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKI 394
PRWHEQLQCWCLNF+GRVTVASVKNFQL+AA +P A ++ +K+
Sbjct: 1613PRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPCQNVSA--------------AEQEKV 1750
Query: 395 ILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
ILQFGK+GKD+FTMDYRYPLSAFQAFAICL+SFDTK ACE
Sbjct: 1751ILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 1870
>TC215258 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, partial (62%)
Length = 1594
Score = 387 bits (995), Expect = e-108
Identities = 203/408 (49%), Positives = 271/408 (65%), Gaps = 6/408 (1%)
Frame = +3
Query: 33 KSRSSVHELHDQPLVIQSSRWASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWR 92
K+ S H + Q ++ S WA++P ELLR+V+ R+E++ES WP R+ VVAC VC++WR
Sbjct: 39 KNTQSTHMIEVQANAMEQSWWANMPHELLREVLLRIESSESTWPLRRSVVACGGVCRTWR 218
Query: 93 EMC-KEIVGSPEFCGKITFPVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVEN 151
+ KEIV P+F ITFP+SLKQPG R+ +QCFI+R+ + TY+LFL LS AL+ ++
Sbjct: 219 RLIVKEIVKPPQFSSNITFPISLKQPGPREHLLQCFIRRNSASQTYYLFLSLSSALVADD 398
Query: 152 GKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYD-----TQPP 206
GKFLL+A++ RR TCT+YIIS+DAD++SR S+ Y+GKLRSNFLGTKF IYD T+
Sbjct: 399 GKFLLAARKFRRPTCTDYIISLDADDMSRESNAYVGKLRSNFLGTKFTIYDRKSCSTELV 578
Query: 207 YNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASS 266
N+ Q+SP P+VP+G+Y +A ++YELNVLG+RGPRRM+C M +IPAS+
Sbjct: 579 VNSKQVSP------------RPRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDTIPASA 722
Query: 267 LDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKER 326
++ GG P ++ S R SF NST ++ D + K+
Sbjct: 723 IEPGGVAVAAPSQTDFSV--SNRDTSFPFFQTNSTSLENSISGD---------QSNKKDD 869
Query: 327 PLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQ 386
LVL+NK+ RWHEQLQCWCLNF GRVT+ASVKNFQL + + G
Sbjct: 870 VLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLAVSPENGHAG-------------- 1007
Query: 387 PPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
D++ILQFGK+GKD+FTMDYRYP+SAFQAFAICL+SF T +ACE
Sbjct: 1008--LQEDEVILQFGKIGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 1145
>TC204450 homologue to GB|AAM18187.1|33413451|AY092403 tubby-like protein 7
{Arabidopsis thaliana;} , partial (66%)
Length = 1403
Score = 357 bits (917), Expect = 4e-99
Identities = 185/382 (48%), Positives = 246/382 (63%)
Frame = +1
Query: 53 WASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPV 112
W+S+ PE+L ++++R++ E WP R++VVACA VCK WR++ +E+V P GKITFP
Sbjct: 229 WSSMLPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPS 408
Query: 113 SLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIIS 172
LKQPG RD P QC IKR+K T++L+L L+P+ + GKFLL+A+R R T TEYIIS
Sbjct: 409 CLKQPGPRDVPHQCLIKRNKKTSTFYLYLALTPSF-TDKGKFLLAARRYRCGTHTEYIIS 585
Query: 173 MDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPS 232
+DAD++S+ S+ Y+GKL S+FLGT F IYD+QPP++ A+ S SRRF SK++SP+VP+
Sbjct: 586 LDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPA 765
Query: 233 GSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSIS 292
G++ + QV+Y+ N+L +RGPRRM C++ P P +S
Sbjct: 766 GNFEVGQVSYKFNLLKSRGPRRMVCSL------------KCPVTP-------------VS 870
Query: 293 FARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRV 352
+ST + + D +E+ +LKNK+PRWHE LQCWCLNF GRV
Sbjct: 871 PTSGSSDSTPVNGHKMHD---------KEQAASGYTILKNKAPRWHEHLQCWCLNFHGRV 1023
Query: 353 TVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRY 412
TVASVKNFQL+A + GG D + ++LQFGKVG D FTMDYR
Sbjct: 1024TVASVKNFQLVATVDQSQPGG--------------KGDEETVLLQFGKVGDDTFTMDYRQ 1161
Query: 413 PLSAFQAFAICLTSFDTKLACE 434
PLSAFQAFAICLTSF TKLACE
Sbjct: 1162PLSAFQAFAICLTSFGTKLACE 1227
>TC205440 similar to UP|TUB_HUMAN (P50607) Tubby protein homolog, partial
(4%)
Length = 628
Score = 352 bits (902), Expect = 2e-97
Identities = 174/211 (82%), Positives = 192/211 (90%)
Frame = +2
Query: 150 ENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNN 209
ENGKFLLSAKRTRRTTCTEYIISMDADNISRS+STYIGKLRSNFLGTKFIIYDTQPPYNN
Sbjct: 2 ENGKFLLSAKRTRRTTCTEYIISMDADNISRSNSTYIGKLRSNFLGTKFIIYDTQPPYNN 181
Query: 210 AQLSPPGRSRRFNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDL 269
AQLSPPGRSRRF SKKVSPKVPSGSYNIAQ+TYELNVLGTRGPRRMNCTMHSIP S+L+
Sbjct: 182 AQLSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPMSALEP 361
Query: 270 GGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLV 329
G +VPG+PELLPR+L+DSF+SIS ARS DNSTEF S+R SDI+ AGN EEE+GK P++
Sbjct: 362 GCTVPGQPELLPRSLKDSFQSISSARSNDNSTEFISSRISDILVAGN--EEEQGKGMPVI 535
Query: 330 LKNKSPRWHEQLQCWCLNFRGRVTVASVKNF 360
L+NKSP WHEQLQCWCLN+R TVA V+ +
Sbjct: 536 LENKSPGWHEQLQCWCLNYRWMETVAYVRMY 628
>TC205438 similar to UP|TUL1_HUMAN (O00294) Tubby related protein 1
(Tubby-like protein 1), partial (14%)
Length = 890
Score = 316 bits (810), Expect = 1e-86
Identities = 160/194 (82%), Positives = 172/194 (88%), Gaps = 2/194 (1%)
Frame = +3
Query: 243 ELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTE 302
ELNV G RGPRRMNCTM+SIPASS++ G VPG+PELLPRALEDSFRSISF++SIDNSTE
Sbjct: 12 ELNVXGXRGPRRMNCTMYSIPASSMEPNGVVPGQPELLPRALEDSFRSISFSKSIDNSTE 191
Query: 303 FSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQL 362
FSS+RFSDI+G G E+EEGK RPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQL
Sbjct: 192 FSSSRFSDIMGTG--IEDEEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQL 365
Query: 363 IAATQPASGGGAPPTGTGAAP--PSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAF 420
IA+T PA+ PTGTG P P+Q SDPDKIILQFGKVGKDMFTMDYRYPLSAFQAF
Sbjct: 366 IASTPPAA---VAPTGTGPTPSQPTQSSSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAF 536
Query: 421 AICLTSFDTKLACE 434
AICLTSFDTKLACE
Sbjct: 537 AICLTSFDTKLACE 578
>TC218981 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (55%)
Length = 1076
Score = 285 bits (730), Expect = 2e-77
Identities = 148/274 (54%), Positives = 192/274 (70%), Gaps = 1/274 (0%)
Frame = +2
Query: 162 RRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGR-SRR 220
RR T T++IIS+ AD+ SRSS+TY+GKLRSNFLGTKF IYD+QPP A + P R SRR
Sbjct: 2 RRATGTDFIISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPP-QGAAIQPDNRSSRR 178
Query: 221 FNSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELL 280
F+SK+VSP+VP+ +Y ++ + YELNVL RGPRRM+CTM+SI S++ GG+ P P
Sbjct: 179 FHSKQVSPRVPACNYVVSTIAYELNVLRARGPRRMHCTMNSISVSAVQEGGNAP-TPTSF 355
Query: 281 PRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQ 340
P+ +++ F + + +A +++ +++ E PLVLKNK+PRWHEQ
Sbjct: 356 PQIIDEPFSPSPALKGKGPIRDLDNASLPELLPVQSQDSAE-----PLVLKNKAPRWHEQ 520
Query: 341 LQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGK 400
LQCWCLNF GRVTVASVKNFQL+AA P+ A ++ +K+ILQFGK
Sbjct: 521 LQCWCLNFNGRVTVASVKNFQLVAAVDPSHNVSA--------------AEQEKVILQFGK 658
Query: 401 VGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
+GKD+FTMDYRYPLSAFQAFA CL+SFDTK ACE
Sbjct: 659 IGKDIFTMDYRYPLSAFQAFATCLSSFDTKPACE 760
>TC207400 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (54%)
Length = 1006
Score = 239 bits (609), Expect = 2e-63
Identities = 129/249 (51%), Positives = 168/249 (66%), Gaps = 1/249 (0%)
Frame = +1
Query: 187 GKLRSNFLGTKFIIYDTQPPYNNAQLSPPGR-SRRFNSKKVSPKVPSGSYNIAQVTYELN 245
GKLRSNFLGTKF I+D+Q P N+ + P + SRRF+SK+VSP++P+ +Y ++ V+YELN
Sbjct: 1 GKLRSNFLGTKFTIFDSQAP-NDVAIQPNCQSSRRFHSKQVSPRLPACNYLVSTVSYELN 177
Query: 246 VLGTRGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSS 305
VL TRGPRRM C M+SIP S++ GG+ P P P+ ++ F + T+ +S
Sbjct: 178 VLCTRGPRRMYCVMNSIPVSAIQEGGNAP-TPASYPQIFDEHFSPSPALKEKVPVTDLNS 354
Query: 306 ARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAA 365
A S+ + E+ L LKN++PRWHEQLQCWCLNF+GRV+VASVKNFQL+AA
Sbjct: 355 ASLSEPPVSSQCSAEQ------LALKNRAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAA 516
Query: 366 TQPASGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLT 425
P+ A + +K+ILQFGK+GKD+FTMDY YPLS FQAFAICL+
Sbjct: 517 VDPSHNISA--------------EEQEKVILQFGKIGKDIFTMDYCYPLSTFQAFAICLS 654
Query: 426 SFDTKLACE 434
SFDTK ACE
Sbjct: 655 SFDTKPACE 681
>TC206472 similar to GB|AAP13398.1|30023730|BT006290 At1g25280 {Arabidopsis
thaliana;} , partial (46%)
Length = 722
Score = 236 bits (602), Expect = 1e-62
Identities = 122/161 (75%), Positives = 135/161 (83%), Gaps = 1/161 (0%)
Frame = +3
Query: 275 GKPELLPRALEDSFRSISFARSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKS 334
G+PELLPR LEDSFRSISF++S+D S EFSS+RFS+I + E+++GK RPLVLKNK
Sbjct: 15 GQPELLPRPLEDSFRSISFSKSLDRSIEFSSSRFSEI--GESIIEDDDGKMRPLVLKNKP 188
Query: 335 PRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGAAPPSQP-PSDPDK 393
PRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQP + GA PSQP P + DK
Sbjct: 189 PRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPA---------GAPTPSQPAPPEHDK 341
Query: 394 IILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
IILQFGKVGKDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 342 IILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 464
>BE659346
Length = 646
Score = 223 bits (568), Expect = 1e-58
Identities = 118/141 (83%), Positives = 122/141 (85%), Gaps = 1/141 (0%)
Frame = -2
Query: 295 RSIDNSTEFSSARFSDIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTV 354
RSIDNSTEFSS+RFSDI AGNEEE+ GK RPLVLKNKSPRWHEQLQCWCLNFRGRVTV
Sbjct: 645 RSIDNSTEFSSSRFSDIFVAGNEEEQ--GKGRPLVLKNKSPRWHEQLQCWCLNFRGRVTV 472
Query: 355 ASVKNFQLIAATQPASGGGAPPTGTGAAPPSQP-PSDPDKIILQFGKVGKDMFTMDYRYP 413
ASVKNFQLIAATQP + G PT P SQP SD DKIILQFGKVGKD+FTMDYRYP
Sbjct: 471 ASVKNFQLIAATQPPAAGA--PT-----PSSQPAQSDHDKIILQFGKVGKDIFTMDYRYP 313
Query: 414 LSAFQAFAICLTSFDTKLACE 434
LSAFQAFAICLTSFDTKLACE
Sbjct: 312 LSAFQAFAICLTSFDTKLACE 250
>CA800259
Length = 432
Score = 199 bits (506), Expect = 2e-51
Identities = 100/122 (81%), Positives = 105/122 (85%)
Frame = +1
Query: 1 MSFRSIVRDVRDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLVIQSSRWASLPPEL 60
MSFRSIVRDVRDGFGSLSRRSFDV + G K S VHE H++ LVIQ+SRWASLPPEL
Sbjct: 73 MSFRSIVRDVRDGFGSLSRRSFDVRISGGG--KLNSLVHEAHERQLVIQNSRWASLPPEL 246
Query: 61 LRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITFPVSLKQPGYR 120
L DVIKRLE +ES WP RKHVVACAAVCKSWREMCKEIV SPEFCGKITFPVSLKQPG R
Sbjct: 247 LCDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSR 426
Query: 121 DG 122
DG
Sbjct: 427 DG 432
>TC209398 similar to GB|AAP13398.1|30023730|BT006290 At1g25280 {Arabidopsis
thaliana;} , partial (36%)
Length = 650
Score = 194 bits (493), Expect = 7e-50
Identities = 98/119 (82%), Positives = 103/119 (86%), Gaps = 2/119 (1%)
Frame = +1
Query: 318 EEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPT 377
+EEE+GK+RPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQP +
Sbjct: 10 KEEEQGKDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPA------- 168
Query: 378 GTGAAPPSQPP--SDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
TGA PS P SD DKIILQFGKVGKD+FTMDYRYPLSAFQAFAICLTSFDTKLACE
Sbjct: 169 -TGAPMPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE 342
>BE822877
Length = 723
Score = 184 bits (466), Expect = 9e-47
Identities = 95/185 (51%), Positives = 114/185 (61%)
Frame = -3
Query: 250 RGPRRMNCTMHSIPASSLDLGGSVPGKPELLPRALEDSFRSISFARSIDNSTEFSSARFS 309
RGPRRM C MH IP S++ GG+ P P + + D +
Sbjct: 721 RGPRRMRCMMHLIPISAIQEGGNAP-----TPLKFTNYLNDYASTTIPDTKGKKPEVVEF 557
Query: 310 DIIGAGNEEEEEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPA 369
D G N E + PL+LKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQL+AA +P
Sbjct: 556 DSTGTDNTPESIQRAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPC 377
Query: 370 SGGGAPPTGTGAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDT 429
A ++ +K+ILQFGK+GKD+FTMDYRYPLSAFQAFAICL+SFDT
Sbjct: 376 QNVSA--------------AEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDT 239
Query: 430 KLACE 434
K ACE
Sbjct: 238 KPACE 224
>TC220558 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (42%)
Length = 629
Score = 163 bits (412), Expect = 2e-40
Identities = 92/183 (50%), Positives = 121/183 (65%), Gaps = 10/183 (5%)
Frame = +2
Query: 1 MSFRSIVRDV---RDGFGSLSRRSFDVILPGHSRSKSRSSVHELHDQPLV-------IQS 50
MS RSIVR++ RDG GS S+R + SK R S + H P V IQ
Sbjct: 104 MSLRSIVRELKEMRDGIGSTSKRG--------AESKHRLSRTKSHVAPDVLATPFEPIQQ 259
Query: 51 SRWASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWREMCKEIVGSPEFCGKITF 110
+WA+LP ELL D+I+R+E +E++WP R VV CA+VCKSWR + +EIV +PE CG+ITF
Sbjct: 260 GQWANLPSELLLDIIQRVEESETSWPARAVVVFCASVCKSWRSITREIVKTPEQCGRITF 439
Query: 111 PVSLKQPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYI 170
P+SLKQPG RD PIQCFI+R+K TY L+ L P+ ++ K LL+AKR RR T T ++
Sbjct: 440 PISLKQPGPRDSPIQCFIRRNKETSTYLLYFGLVPS-ENDSNKLLLAAKRIRRATGTGFV 616
Query: 171 ISM 173
IS+
Sbjct: 617 ISL 625
>BI970616 similar to GP|7635492|emb tubby-like protein {Cicer arietinum},
partial (28%)
Length = 709
Score = 160 bits (405), Expect = 1e-39
Identities = 76/115 (66%), Positives = 89/115 (77%)
Frame = -2
Query: 320 EEEGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGT 379
E +G PLVLKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQL++A P+ A
Sbjct: 603 ESQGSAEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVSAVDPSHNVSA----- 439
Query: 380 GAAPPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
++ +K+ILQFGK+GKD+FTMDYRYPLSAFQAFAICL+SFDTK ACE
Sbjct: 438 ---------AEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 301
>TC207399 similar to UP|Q9M3H9 (Q9M3H9) Tubby-like protein, partial (33%)
Length = 697
Score = 148 bits (373), Expect = 5e-36
Identities = 71/113 (62%), Positives = 83/113 (72%)
Frame = +3
Query: 322 EGKERPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPASGGGAPPTGTGA 381
+G L LKNK+PRWHEQLQCWCLNF+GRV+VASVKNFQL+AA P+ A
Sbjct: 114 QGSTEQLALKNKAPRWHEQLQCWCLNFKGRVSVASVKNFQLVAAVDPSHNISA------- 272
Query: 382 APPSQPPSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 434
+ +K+ILQFGK+GKD+FTMDY YPLS FQAFAICL+SFDTK ACE
Sbjct: 273 -------EEQEKVILQFGKIGKDIFTMDYCYPLSTFQAFAICLSSFDTKPACE 410
>TC215257 similar to UP|Q8VY21 (Q8VY21) Tubby-like protein 3, partial (20%)
Length = 522
Score = 90.5 bits (223), Expect(2) = 2e-35
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +1
Query: 33 KSRSSVHELHDQPLVIQSSRWASLPPELLRDVIKRLETNESAWPGRKHVVACAAVCKSWR 92
K+ S H + Q ++ S WA++P ELLR+V+ R+E++ES WP R+ VVAC VC++WR
Sbjct: 22 KNTQSTHMIEVQANAMEQSWWANMPHELLREVLLRIESSESTWPLRRSVVACGGVCRTWR 201
Query: 93 EM-CKEIVGSPEFCGKITFPVSLKQ 116
+ KEIV P+F ITFP+SLKQ
Sbjct: 202 RLIVKEIVKPPQFSSNITFPISLKQ 276
Score = 77.4 bits (189), Expect(2) = 2e-35
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = +3
Query: 116 QPGYRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDA 175
QPG R+ +QCFI+R+ + TY+LFL LS AL+ ++GKFLL+A++ RR TCT+YIIS+DA
Sbjct: 342 QPGPREHLLQCFIRRNSASQTYYLFLSLSSALVADDGKFLLAARKFRRPTCTDYIISLDA 521
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,804,826
Number of Sequences: 63676
Number of extensions: 337768
Number of successful extensions: 3176
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 2805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3087
length of query: 434
length of database: 12,639,632
effective HSP length: 100
effective length of query: 334
effective length of database: 6,272,032
effective search space: 2094858688
effective search space used: 2094858688
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0052b.11