BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0052a.2
(68 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227743 similar to PIR|E86326|E86326 protein F18O14.3 [imported... 119 2e-28
TC206224 similar to PIR|E86326|E86326 protein F18O14.3 [imported... 115 6e-27
BG238816 89 3e-19
TC227914 similar to UP|Q6R567 (Q6R567) Ring domain containing pr... 89 3e-19
TC228188 similar to GB|AAP31929.1|30387527|BT006585 At3g58030 {A... 88 1e-18
TC216035 similar to GB|AAP13393.1|30023720|BT006285 At4g27470 {A... 86 5e-18
TC207478 similar to UP|Q6R567 (Q6R567) Ring domain containing pr... 85 8e-18
TC216036 similar to GB|AAP13393.1|30023720|BT006285 At4g27470 {A... 79 4e-16
AW755410 69 6e-13
BE802170 66 4e-12
TC232858 similar to GB|AAO23618.1|27764994|BT003053 At4g28270 {A... 47 1e-06
AW396485 43 3e-05
AW759157 41 1e-04
TC218937 similar to UP|PEXA_ARATH (Q9SYU4) Peroxisome assembly p... 40 2e-04
CO982502 40 2e-04
TC231911 40 2e-04
BG239292 39 5e-04
TC228722 weakly similar to UP|RAD5_YEAST (P32849) DNA repair pro... 36 0.003
TC206223 weakly similar to PIR|E86326|E86326 protein F18O14.3 [i... 35 0.007
BE660008 27 0.028
>TC227743 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(73%)
Length = 1212
Score = 119 bits (299), Expect = 2e-28
Identities = 50/68 (73%), Positives = 59/68 (86%)
Frame = +2
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNICF+LAQDP+ITLCG+LF WPCLYKWLHFHS S++CPVC AL EE+KLVPL+GRG +S
Sbjct: 218 CNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKSS 397
Query: 61 SSSSSSSI 68
+ S SI
Sbjct: 398 TDPRSKSI 421
>TC206224 similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(43%)
Length = 1080
Score = 115 bits (287), Expect = 6e-27
Identities = 48/67 (71%), Positives = 56/67 (82%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTS 60
CNICFDLAQDPVITLCG+LF WPCLY+WLH HS SQ+CPVC AL +E+KLVPL+GRG T
Sbjct: 316 CNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQ 495
Query: 61 SSSSSSS 67
+ + S
Sbjct: 496 TDPRTKS 516
>BG238816
Length = 433
Score = 89.4 bits (220), Expect = 3e-19
Identities = 39/66 (59%), Positives = 45/66 (68%)
Frame = +2
Query: 2 NICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTSS 61
NIC+D AQDPVI LCG+LF W CLY WLH S CPV AL E+KL PL+GRGNT +
Sbjct: 2 NICYDWAQDPVIALCGHLFCWTCLYMWLHHRSHPLDCPVLKALVHEEKLCPLYGRGNTQT 181
Query: 62 SSSSSS 67
+ S
Sbjct: 182DPRTKS 199
>TC227914 similar to UP|Q6R567 (Q6R567) Ring domain containing protein,
partial (29%)
Length = 1078
Score = 89.4 bits (220), Expect = 3e-19
Identities = 38/71 (53%), Positives = 47/71 (65%), Gaps = 8/71 (11%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS--------QQCPVCNALAEEDKLVP 52
CNIC + QDPV+TLCG+L+ WPC+YKWLHF S S QCPVC + + LVP
Sbjct: 295 CNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDDEEQQRPQCPVCKSEVSQSSLVP 474
Query: 53 LHGRGNTSSSS 63
L+GRG T+ S
Sbjct: 475 LYGRGQTTLPS 507
>TC228188 similar to GB|AAP31929.1|30387527|BT006585 At3g58030 {Arabidopsis
thaliana;} , partial (27%)
Length = 877
Score = 87.8 bits (216), Expect = 1e-18
Identities = 33/58 (56%), Positives = 43/58 (73%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGN 58
CNIC DLA+DPV+T CG+LF WPCLY+WLH HS +++CPVC + P++GR N
Sbjct: 241 CNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRAN 414
>TC216035 similar to GB|AAP13393.1|30023720|BT006285 At4g27470 {Arabidopsis
thaliana;} , partial (32%)
Length = 966
Score = 85.5 bits (210), Expect = 5e-18
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS------QQCPVCNALAEEDKLVPLH 54
CNIC D A +PV+TLCG+L+ WPC+YKWLH S S QCPVC A +VPL+
Sbjct: 205 CNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKADISNSTMVPLY 384
Query: 55 GRGNTSSSSSSSS 67
GRG+ +++ +S
Sbjct: 385 GRGHAATAEGKTS 423
>TC207478 similar to UP|Q6R567 (Q6R567) Ring domain containing protein,
partial (51%)
Length = 1103
Score = 84.7 bits (208), Expect = 8e-18
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 7/66 (10%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS-------QQCPVCNALAEEDKLVPL 53
CNIC + QDPV+TLCG+L+ WPC+YKWL+ + S QQCPVC + + LVPL
Sbjct: 247 CNICLECVQDPVVTLCGHLYCWPCIYKWLNLQTASSENEEEKQQCPVCKSEISQSSLVPL 426
Query: 54 HGRGNT 59
+GRG T
Sbjct: 427 YGRGQT 444
>TC216036 similar to GB|AAP13393.1|30023720|BT006285 At4g27470 {Arabidopsis
thaliana;} , partial (23%)
Length = 1061
Score = 79.0 bits (193), Expect = 4e-16
Identities = 34/63 (53%), Positives = 41/63 (64%), Gaps = 6/63 (9%)
Frame = +3
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS------QQCPVCNALAEEDKLVPLH 54
CNIC D A +PV+TLCG+L+ WPC+YKWLH S S QCPVC +VPL+
Sbjct: 282 CNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLY 461
Query: 55 GRG 57
GRG
Sbjct: 462 GRG 470
>AW755410
Length = 433
Score = 68.6 bits (166), Expect = 6e-13
Identities = 28/46 (60%), Positives = 33/46 (70%), Gaps = 5/46 (10%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS-----QQCPVC 41
CNIC + QDPV+TLCG+L+ WPC+YKWLHF S S QQ P C
Sbjct: 295 CNICLECVQDPVVTLCGHLYCWPCIYKWLHFQSTSLDNEEQQKPQC 432
>BE802170
Length = 407
Score = 65.9 bits (159), Expect = 4e-12
Identities = 27/49 (55%), Positives = 33/49 (67%), Gaps = 6/49 (12%)
Frame = +2
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLS------QQCPVCNA 43
CNIC + A DPV+TLCG+L+ WPC+YKWL S S Q CPVC +
Sbjct: 248 CNICMESAHDPVVTLCGHLYCWPCIYKWLDVQSSSVEPYQQQTCPVCKS 394
>TC232858 similar to GB|AAO23618.1|27764994|BT003053 At4g28270 {Arabidopsis
thaliana;} , partial (15%)
Length = 692
Score = 47.4 bits (111), Expect = 1e-06
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYK 27
CN+C D A+DP +T CG+LF WPC +K
Sbjct: 608 CNVCLDTARDPGLTCCGHLFCWPCFHK 688
>AW396485
Length = 544
Score = 43.1 bits (100), Expect = 3e-05
Identities = 20/47 (42%), Positives = 25/47 (52%), Gaps = 6/47 (12%)
Frame = +2
Query: 19 LFRWPCLYKWLHFHSLS------QQCPVCNALAEEDKLVPLHGRGNT 59
L+ WPC+YKWLH S S QCP C +VPL+G G +
Sbjct: 2 LYCWPCIYKWLHVQSASLAPNEHPQCPGCKDDICHTTMVPLYGPGQS 142
>AW759157
Length = 199
Score = 40.8 bits (94), Expect = 1e-04
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +2
Query: 24 CLYKWLHFHSLSQQCPVCNALAEEDKLVPLHGRGNTSSSSSSSS 67
CLY LH HS SQ P L +EDKLVPL+ R T + + S
Sbjct: 5 CLYN*LHHHSHSQ*YPSGRTLRQEDKLVPLYKRNKTHTDPRTDS 136
>TC218937 similar to UP|PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10
(Peroxin-10) (AthPEX10) (Pex10p) (PER8), partial (73%)
Length = 1217
Score = 40.4 bits (93), Expect = 2e-04
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLV 51
C +C Q P T CG++F W C+ +W + +CP+C LV
Sbjct: 958 CTLCLSNRQHPTATSCGHVFCWNCITEWC---NEKPECPLCRTPITHSSLV 1101
>CO982502
Length = 677
Score = 40.4 bits (93), Expect = 2e-04
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = -1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAEEDKLV 51
C +C Q P T CG++F W C+ +W + +CP+C LV
Sbjct: 236 CTLCLSNPQHPTATSCGHVFCWNCITEWC---NEKPECPLCRTPITHSSLV 93
>TC231911
Length = 672
Score = 40.0 bits (92), Expect = 2e-04
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +1
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWL------HFHSLSQQCPVCNALAEEDKLVPLH 54
C IC + P IT CG++F +PC+ ++L H ++CP+C + L +H
Sbjct: 280 CPICLEYPMCPQITTCGHIFCFPCILQYLLMGEEDHKGDSWKRCPLCFVMISAKDLYTVH 459
>BG239292
Length = 319
Score = 38.9 bits (89), Expect = 5e-04
Identities = 19/48 (39%), Positives = 24/48 (49%), Gaps = 6/48 (12%)
Frame = +2
Query: 16 CGYLFRWPCLYKWLHFHSL------SQQCPVCNALAEEDKLVPLHGRG 57
CG L+ PC+Y+WLH CPVC +VPL+GRG
Sbjct: 23 CGPLY*LPCVYEWLHVQRACIAPDEHPLCPVCRDDICHTTMVPLYGRG 166
>TC228722 weakly similar to UP|RAD5_YEAST (P32849) DNA repair protein RAD5,
partial (4%)
Length = 1293
Score = 36.2 bits (82), Expect = 0.003
Identities = 15/46 (32%), Positives = 26/46 (55%)
Frame = +3
Query: 1 CNICFDLAQDPVITLCGYLFRWPCLYKWLHFHSLSQQCPVCNALAE 46
C+IC D +D V+++CG++F C+ + H QCP N ++
Sbjct: 24 CSICNDPPEDAVVSVCGHVFCNQCICE--HLSGDDNQCPAANCKSQ 155
>TC206223 weakly similar to PIR|E86326|E86326 protein F18O14.3 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(39%)
Length = 655
Score = 35.0 bits (79), Expect = 0.007
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 40 VCNALAEEDKLVPLHGRGNTSS 61
VC AL +E+KLVPL+GRG T +
Sbjct: 2 VCKALVQEEKLVPLYGRGKTQT 67
>BE660008
Length = 641
Score = 27.3 bits (59), Expect(2) = 0.028
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +3
Query: 22 WPCLYKWLHFHS 33
W CL +WLH HS
Sbjct: 597 WSCLXRWLHLHS 632
Score = 24.6 bits (52), Expect(2) = 0.028
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 1 CNICFDLAQDPVI 13
CNI DLA+DPV+
Sbjct: 536 CNIWLDLARDPVV 574
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.137 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,592,484
Number of Sequences: 63676
Number of extensions: 105593
Number of successful extensions: 1230
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of query: 68
length of database: 12,639,632
effective HSP length: 44
effective length of query: 24
effective length of database: 9,837,888
effective search space: 236109312
effective search space used: 236109312
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0052a.2