BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0051b.2
(276 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204556 homologue to UP|Q6W2J5 (Q6W2J5) VDAC1.1, complete 516 e-147
TC214669 homologue to UP|Q6W2J3 (Q6W2J3) VDAC1.3, complete 419 e-118
TC204557 similar to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (64%) 321 3e-88
TC214640 similar to UP|Q6W2J3 (Q6W2J3) VDAC1.3, partial (72%) 299 1e-81
TC226511 similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, complete 295 1e-80
TC217508 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, complete 264 4e-71
TC209012 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (49%) 246 6e-66
AW704159 weakly similar to PIR|T12558|T12 porin - common ice pla... 242 1e-64
AW132758 weakly similar to PIR|S36454|S36 porin por1 - garden pe... 208 2e-54
AW568478 weakly similar to GP|5031279|gb| porin {Prunus armeniac... 200 7e-52
TC209013 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (37%) 185 2e-47
AW733991 weakly similar to PIR|S36454|S36 porin por1 - garden pe... 159 2e-39
TC234551 weakly similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, partial (... 145 2e-35
AW309803 weakly similar to GP|5031279|gb| porin {Prunus armeniac... 135 3e-32
AW309859 similar to GP|5031279|gb|A porin {Prunus armeniaca}, pa... 112 2e-25
BE331557 weakly similar to GP|5031279|gb|A porin {Prunus armenia... 101 4e-22
TC209882 weakly similar to UP|Q9FJX3 (Q9FJX3) Porin-like protein... 89 2e-18
BE347560 weakly similar to PIR|S46959|S469 porin I 36K - potato... 89 3e-18
TC217509 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, partial (36%) 87 6e-18
CF922533 82 3e-16
>TC204556 homologue to UP|Q6W2J5 (Q6W2J5) VDAC1.1, complete
Length = 1312
Score = 516 bits (1328), Expect = e-147
Identities = 256/276 (92%), Positives = 270/276 (97%)
Frame = +2
Query: 1 MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
MAKGPGLY+DIGKKARDLLFKDYHSDQKFTITT+SPTGVAIT+SGT+K ELF+ADVNTQL
Sbjct: 122 MAKGPGLYSDIGKKARDLLFKDYHSDQKFTITTYSPTGVAITASGTRKSELFLADVNTQL 301
Query: 61 KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
KNKNITTDIKVDTDSNLFTTI VN+PAPGLKAIFSFKVPDQRSGKVE+QYLHDYAGIS+S
Sbjct: 302 KNKNITTDIKVDTDSNLFTTITVNEPAPGLKAIFSFKVPDQRSGKVEVQYLHDYAGISTS 481
Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
+GLTANPIVNFSGVIGTNVLALGADL+FDTKIGELTKSNAGLSFTKDDLIA+LTLNDKGD
Sbjct: 482 VGLTANPIVNFSGVIGTNVLALGADLSFDTKIGELTKSNAGLSFTKDDLIASLTLNDKGD 661
Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
ALNA+YYHVV+PLTNTAVGAEVTHRFSTNENTLTLGTQH LDPLTTLKARVNNFG+ SAL
Sbjct: 662 ALNAAYYHVVNPLTNTAVGAEVTHRFSTNENTLTLGTQHQLDPLTTLKARVNNFGRTSAL 841
Query: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
IQHEWRPKSFFTISGEVDTKAIEKSAKVGL L LKP
Sbjct: 842 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLGLVLKP 949
>TC214669 homologue to UP|Q6W2J3 (Q6W2J3) VDAC1.3, complete
Length = 1374
Score = 419 bits (1076), Expect = e-118
Identities = 201/276 (72%), Positives = 243/276 (87%)
Frame = +3
Query: 1 MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
M KGPGLY+DIGK+ARDLLFKDY +D KFTITT++ TGV ITS+G +KGE+++ADV+T++
Sbjct: 222 MVKGPGLYSDIGKRARDLLFKDYQNDHKFTITTYTSTGVEITSTGVRKGEIYLADVSTKV 401
Query: 61 KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
KNKNITTD+KVDT+SNL TTI V++PAPGLK IFSF PDQ+SGKVELQY H+YAGI++S
Sbjct: 402 KNKNITTDVKVDTNSNLRTTITVDEPAPGLKTIFSFNFPDQKSGKVELQYQHEYAGINTS 581
Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
IGLTANP+VNFSGV+G N++A+G DL+FDT G TK NAGL+ T DLIA+LTLNDKGD
Sbjct: 582 IGLTANPVVNFSGVVGNNLVAVGTDLSFDTASGNFTKYNAGLNITHADLIASLTLNDKGD 761
Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
L ASYYH+V+PLTNTAVGAE++H FS NEN LT GTQHALDPLT LK+RVNN+G+ASAL
Sbjct: 762 NLTASYYHIVNPLTNTAVGAELSHSFSGNENILTFGTQHALDPLTLLKSRVNNYGRASAL 941
Query: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
IQH+W P++ F++ GEVDT AIEKSAKVGLA+ALKP
Sbjct: 942 IQHDWTPRTRFSLVGEVDTGAIEKSAKVGLAVALKP 1049
>TC204557 similar to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (64%)
Length = 632
Score = 321 bits (822), Expect = 3e-88
Identities = 156/178 (87%), Positives = 172/178 (95%)
Frame = +2
Query: 1 MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
M+KGPGLY+DIGKKARDLLFKDYHSDQKFTITT+SPTGVAITSSGTKKG+LFVADVNTQL
Sbjct: 29 MSKGPGLYSDIGKKARDLLFKDYHSDQKFTITTYSPTGVAITSSGTKKGDLFVADVNTQL 208
Query: 61 KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
KNKNITTDIKVDT SNLFTTI VN+PAPGLK IFSF+VPDQRSGKVE+QYLHDYAGIS+S
Sbjct: 209 KNKNITTDIKVDTGSNLFTTITVNEPAPGLKTIFSFRVPDQRSGKVEVQYLHDYAGISTS 388
Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDK 178
+GLTANPIVNFSGV+GTNVLALG D++FDTKIGELTK NAGL+FTKDDL+A+LT+N K
Sbjct: 389 VGLTANPIVNFSGVVGTNVLALGTDVSFDTKIGELTKFNAGLNFTKDDLVASLTVNTK 562
>TC214640 similar to UP|Q6W2J3 (Q6W2J3) VDAC1.3, partial (72%)
Length = 942
Score = 299 bits (765), Expect = 1e-81
Identities = 146/200 (73%), Positives = 172/200 (86%)
Frame = +1
Query: 77 LFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSSIGLTANPIVNFSGVIG 136
L T I V++PAPGLK IFSF PDQ+SGKVELQY H+YAGIS+SIGLTANP+VNFSGV+G
Sbjct: 1 LRTIITVDEPAPGLKTIFSFNFPDQKSGKVELQYQHEYAGISTSIGLTANPVVNFSGVVG 180
Query: 137 TNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGDALNASYYHVVSPLTNT 196
N++A+G DL+FDT G TK NAGL+ T DLIA+LTLNDKGD L ASYYH+V+PLTN+
Sbjct: 181 NNLVAVGTDLSFDTTSGNFTKYNAGLNITHADLIASLTLNDKGDNLTASYYHIVNPLTNS 360
Query: 197 AVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASALIQHEWRPKSFFTISGE 256
AVGAE++H FS NEN LT GTQHALDPLT LKARVNN+G+ASALIQH+W P++ F++ GE
Sbjct: 361 AVGAELSHSFSGNENILTFGTQHALDPLTLLKARVNNYGRASALIQHDWTPRTRFSLVGE 540
Query: 257 VDTKAIEKSAKVGLALALKP 276
VDT AIEKSAKVGLA+ALKP
Sbjct: 541 VDTGAIEKSAKVGLAVALKP 600
>TC226511 similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, complete
Length = 1208
Score = 295 bits (756), Expect = 1e-80
Identities = 144/276 (52%), Positives = 197/276 (71%)
Frame = +2
Query: 1 MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
M+KGPGL+TDIGKK++DLL KDY+SDQK TI+++S +GVA+TS+ KKG L DV
Sbjct: 62 MSKGPGLFTDIGKKSKDLLTKDYNSDQKLTISSYSISGVALTSTSVKKGGLSTGDVAALY 241
Query: 61 KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
K KN D+K+DT S + TT+ ND P K I SFK+PD SGK+E+QY HD+A ++++
Sbjct: 242 KYKNTIIDVKLDTASTISTTLTFNDVLPSTKTIASFKLPDYNSGKLEVQYFHDHATLTTA 421
Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
+ L +P+++ S +GT +ALGA+ +DT G TK AG+S T+ D A++ L DKGD
Sbjct: 422 VALKQSPVIDVSATVGTPTIALGAEAGYDTSSGGFTKYTAGISVTRPDSSASVILGDKGD 601
Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
++ ASY H + L +A AE+T +FSTNEN T+G A+DPLT +KAR+NN GK AL
Sbjct: 602 SIKASYLHHLDLLKKSAAVAEITRKFSTNENIFTVGGSFAVDPLTQVKARLNNHGKLGAL 781
Query: 241 IQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
+QHE PKS FT+SGE+DTKA++K + GLA+ALKP
Sbjct: 782 LQHEIIPKSVFTVSGEIDTKALDKKPRFGLAIALKP 889
>TC217508 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, complete
Length = 1448
Score = 264 bits (674), Expect = 4e-71
Identities = 132/277 (47%), Positives = 182/277 (65%), Gaps = 1/277 (0%)
Frame = +1
Query: 1 MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQL 60
MA GP +++IGK+A+DLL+KDY+ D KF+++ + TG+ + ++G KK +LFV D++T
Sbjct: 187 MANGPAPFSEIGKRAKDLLYKDYNFDHKFSLSIPNSTGLGLIATGLKKDKLFVGDISTLY 366
Query: 61 KNKNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSS 120
K+ N T D+KVDT SN++T + VND G KA SF +PD +SGK+++QYLH +A + SS
Sbjct: 367 KSGNTTVDVKVDTYSNIYTKVTVNDILHGTKAALSFNIPDHKSGKLDVQYLHPHAAVDSS 546
Query: 121 IGLTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGD 180
IGL +P++ S IG+ L LGA++ F+T TK NAG++F K D AL L DKG
Sbjct: 547 IGLNPSPLLELSAAIGSKDLCLGAEVGFNTTSASFTKYNAGVAFNKPDFSVALMLADKGQ 726
Query: 181 ALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASAL 240
L ASY H V V AE++HRFS+ EN T+G+ ++DP T LK R ++ GKA+
Sbjct: 727 TLKASYIHYVDRPDGFTVAAEISHRFSSLENRFTIGSSQSIDPKTVLKTRFSDDGKAAFQ 906
Query: 241 IQHEWRPKSFFTISGEVD-TKAIEKSAKVGLALALKP 276
Q WRP S T+S E D TK S K GLALALKP
Sbjct: 907 CQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALKP 1017
>TC209012 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (49%)
Length = 624
Score = 246 bits (629), Expect = 6e-66
Identities = 121/135 (89%), Positives = 130/135 (95%)
Frame = +2
Query: 142 LGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGDALNASYYHVVSPLTNTAVGAE 201
LG D++FDTKIGELTK NAGL+FTKDDL+A+LT+NDKGDALNASYYH V+ LTNTAVGAE
Sbjct: 2 LGTDVSFDTKIGELTKFNAGLNFTKDDLVASLTVNDKGDALNASYYHAVNRLTNTAVGAE 181
Query: 202 VTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASALIQHEWRPKSFFTISGEVDTKA 261
VTHRFSTNENTLTLGTQHALDPLTT+KARVNNFGKA+ALIQHEWRPKSFFTISGEVDTKA
Sbjct: 182 VTHRFSTNENTLTLGTQHALDPLTTMKARVNNFGKANALIQHEWRPKSFFTISGEVDTKA 361
Query: 262 IEKSAKVGLALALKP 276
IEKSAKVGL LALKP
Sbjct: 362 IEKSAKVGLGLALKP 406
>AW704159 weakly similar to PIR|T12558|T12 porin - common ice plant, partial
(62%)
Length = 526
Score = 242 bits (618), Expect = 1e-64
Identities = 120/173 (69%), Positives = 143/173 (82%)
Frame = +2
Query: 3 KGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQLKN 62
KGPGLY++I KKARDLLF DYHS+QKFTITT+SPTG+AIT+SGT K ELF+ADVNTQ KN
Sbjct: 2 KGPGLYSNISKKARDLLFNDYHSNQKFTITTYSPTGMAITASGTTKSELFLADVNTQFKN 181
Query: 63 KNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSSIG 122
KN+TTD+K+DT+SNLFTTI +N+P PGLKAI SF +Q+SGKV+ YLHDY GIS+SI
Sbjct: 182 KNMTTDMKLDTNSNLFTTITINEPTPGLKAICSFISANQKSGKVKGHYLHDYTGISTSIE 361
Query: 123 LTANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTL 175
LTANPI+NFS +I TN+LAL +L D+KI TK N GL+FTKDD I TL
Sbjct: 362 LTANPIINFSSIIETNILALNTNLAVDSKIV*CTKCNTGLNFTKDD*ITGWTL 520
>AW132758 weakly similar to PIR|S36454|S36 porin por1 - garden pea, partial
(49%)
Length = 565
Score = 208 bits (529), Expect = 2e-54
Identities = 113/188 (60%), Positives = 137/188 (72%)
Frame = +2
Query: 9 TDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQLKNKNITTD 68
+DI KA+D+LF DYH DQ+ TITT+ PT +A+T+S T K EL ADVNTQL+NK ITTD
Sbjct: 2 SDISNKAKDVLFTDYHVDQRLTITTY*PTALAMTASRTTKSELLAADVNTQLENKIITTD 181
Query: 69 IKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSSIGLTANPI 128
+ DTDSN TTIA N+PA GLKAI + K PD SG VE+ YLH YAGIS+S+ LT N +
Sbjct: 182 LNSDTDSNRLTTIADNEPAYGLKAIINCKEPDAMSG*VEMTYLHYYAGISTSVWLT*NAL 361
Query: 129 VNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLNDKGDALNASYYH 188
V FSGVIGTN ALGADL D + E T A LS TK DLIA LT+N++GDA+NA Y
Sbjct: 362 VKFSGVIGTNGHALGADLYIDIRSEE*TIYIAALSCTKYDLIALLTINEQGDAMNAV*YL 541
Query: 189 VVSPLTNT 196
++PL N+
Sbjct: 542 CINPLNNS 565
>AW568478 weakly similar to GP|5031279|gb| porin {Prunus armeniaca}, partial
(63%)
Length = 526
Score = 200 bits (508), Expect = 7e-52
Identities = 100/174 (57%), Positives = 131/174 (74%)
Frame = +2
Query: 4 GPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQLKNK 63
GP L++DI +A DLL KDY +D FT+TT++ T V IT +G GE+++ADV KNK
Sbjct: 5 GPSLFSDIDMRAGDLLRKDYLNDHTFTLTTYTSTVVEITLTGVMIGEIYLADVIPNAKNK 184
Query: 64 NITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSSIGL 123
NIT+D+K+DT S++ T I V++PAPGL IFS+ PDQ+SG+ ELQ H+YAGIS+SIGL
Sbjct: 185 NITSDVKLDTYSHMRTIITVDEPAPGLNTIFSYYYPDQKSGEAELQNQHEYAGISTSIGL 364
Query: 124 TANPIVNFSGVIGTNVLALGADLTFDTKIGELTKSNAGLSFTKDDLIAALTLND 177
TANP+VNFSGV+G N +A G DL+ DT G TK +AGL+ T DLIA+L+LND
Sbjct: 365 TANPVVNFSGVVGNN*VAAGTDLSSDTTSGNFTKYSAGLNITHADLIASLSLND 526
>TC209013 homologue to UP|Q6W2J4 (Q6W2J4) VDAC1.2, partial (37%)
Length = 716
Score = 185 bits (469), Expect = 2e-47
Identities = 90/101 (89%), Positives = 97/101 (95%)
Frame = +1
Query: 176 NDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFG 235
N+KGD+LNASYYH V+ LTNTAVGAEVTH+FSTNENTLTLGTQHALDPLTT+KARVNN G
Sbjct: 211 NNKGDSLNASYYHTVNRLTNTAVGAEVTHQFSTNENTLTLGTQHALDPLTTVKARVNNLG 390
Query: 236 KASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
KA+ALIQHEWRP+SFFTISGEVDTKAIEKSAKVGL LALKP
Sbjct: 391 KANALIQHEWRPRSFFTISGEVDTKAIEKSAKVGLGLALKP 513
>AW733991 weakly similar to PIR|S36454|S36 porin por1 - garden pea, partial
(49%)
Length = 409
Score = 159 bits (401), Expect = 2e-39
Identities = 82/136 (60%), Positives = 103/136 (75%)
Frame = +2
Query: 33 TFSPTGVAITSSGTKKGELFVADVNTQLKNKNITTDIKVDTDSNLFTTIAVNDPAPGLKA 92
T+S TG I ++GT+K E VA+V+TQ KNKNITTDI+VDTD+NL+TTI VN+P PGL+A
Sbjct: 2 TYSHTGAGIATTGTRKREREVAEVDTQTKNKNITTDIEVDTDTNLYTTITVNEPEPGLEA 181
Query: 93 IFSFKVPDQRSGKVELQYLHDYAGISSSIGLTANPIVNFSGVIGTNVLALGADLTFDTKI 152
+ SFKV DQR GK E++ H+Y GIS+S G+ A VN GV GT ALGA+ DTK
Sbjct: 182 MASFKVTDQRPGKGEVED*HEYDGISTSAGVRAKANVNVYGVRGTRAHALGAEADVDTKT 361
Query: 153 GELTKSNAGLSFTKDD 168
E+TK+NAG+SFTKDD
Sbjct: 362 EEVTKTNAGVSFTKDD 409
>TC234551 weakly similar to UP|Q6W2J2 (Q6W2J2) VDAC2.1, partial (41%)
Length = 467
Score = 145 bits (366), Expect = 2e-35
Identities = 66/151 (43%), Positives = 103/151 (67%)
Frame = +3
Query: 3 KGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQLKN 62
KGPG +++IGK+ RD+L KDY+SDQ+FTI++ + +G+ + S+ K L DV + K
Sbjct: 15 KGPGFFSEIGKRGRDILTKDYNSDQRFTISSSTNSGLDLKSTLVKSRGLSSGDVAAEFKY 194
Query: 63 KNITTDIKVDTDSNLFTTIAVNDPAPGLKAIFSFKVPDQRSGKVELQYLHDYAGISSSIG 122
KN ++KVDT+SN+ TT V+D P K I S ++PD SGKVE+QYLH++ + +G
Sbjct: 195 KNKAVNVKVDTESNVLTTFTVSDVVPSAKTIASIRLPDYSSGKVEVQYLHEHVAFTLGVG 374
Query: 123 LTANPIVNFSGVIGTNVLALGADLTFDTKIG 153
L +P+++FSG +GT +A GA+ ++ T +G
Sbjct: 375 LDRSPVIDFSGTMGTPSIAFGAETSYSTSVG 467
>AW309803 weakly similar to GP|5031279|gb| porin {Prunus armeniaca}, partial
(38%)
Length = 349
Score = 135 bits (339), Expect = 3e-32
Identities = 69/114 (60%), Positives = 87/114 (75%)
Frame = -1
Query: 162 LSFTKDDLIAALTLNDKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHAL 221
++ T L+A+LTL DKG L AS H+V+PL N+AVGAE++ FS EN LT GTQHAL
Sbjct: 343 VAITLGALLASLTLKDKGATLFASNSHIVNPLXNSAVGAELSQSFSGKENKLTFGTQHAL 164
Query: 222 DPLTTLKARVNNFGKASALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLALALK 275
DPLT LKARVNN+G AS LIQ +W PK+ F++ GEV+T AI+K AKVG ++ALK
Sbjct: 163 DPLTLLKARVNNYGWASVLIQPDWTPKTQFSLVGEVETGAIKKRAKVGFSVALK 2
>AW309859 similar to GP|5031279|gb|A porin {Prunus armeniaca}, partial (30%)
Length = 274
Score = 112 bits (280), Expect = 2e-25
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = -1
Query: 184 ASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASALIQH 243
ASYYH+V+PLTN A GAE++H NE+ LT GTQHAL PLT ARVNN+G+ASALIQ
Sbjct: 271 ASYYHIVNPLTNAADGAELSHSSYGNEHILTFGTQHALYPLTVSTARVNNYGRASALIQP 92
Query: 244 EWRPKSFFTISGEVDTKAIEKSAKVGLALA 273
W P++ F+ +GEVDT+AI KSA+VG +A
Sbjct: 91 VWTPRTRFSRAGEVDTRAIVKSAEVGHTVA 2
>BE331557 weakly similar to GP|5031279|gb|A porin {Prunus armeniaca}, partial
(34%)
Length = 286
Score = 101 bits (251), Expect = 4e-22
Identities = 51/94 (54%), Positives = 66/94 (69%)
Frame = +2
Query: 95 SFKVPDQRSGKVELQYLHDYAGISSSIGLTANPIVNFSGVIGTNVLALGADLTFDTKIGE 154
SF PDQ+S V+L Y HDYAG++++I LTAN +VNFSGV+G N++A +FDT G
Sbjct: 5 SFNFPDQKSLLVQLLYQHDYAGLTTTIRLTANTVVNFSGVVGHNLVAAVT*HSFDTTSGN 184
Query: 155 LTKSNAGLSFTKDDLIAALTLNDKGDALNASYYH 188
TK NA L T DL+A LTLND+GD ++S YH
Sbjct: 185 STKYNARLDITHADLVAYLTLNDRGDTFSSSCYH 286
>TC209882 weakly similar to UP|Q9FJX3 (Q9FJX3) Porin-like protein, partial
(29%)
Length = 498
Score = 89.0 bits (219), Expect = 2e-18
Identities = 45/91 (49%), Positives = 58/91 (63%)
Frame = +3
Query: 186 YYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKASALIQHEW 245
Y + + L AV E++ RFSTNENTLT+G + +D T LKA++NN G AL+QHE
Sbjct: 3 YLYQLERLNGGAVVGEISRRFSTNENTLTVGCLYVVDSQTALKAKLNNHGNLGALLQHEL 182
Query: 246 RPKSFFTISGEVDTKAIEKSAKVGLALALKP 276
KSF TIS +TK ++KS K G L LKP
Sbjct: 183 TRKSFLTISSAFETKDLDKSPKFGFTLLLKP 275
>BE347560 weakly similar to PIR|S46959|S469 porin I 36K - potato, partial
(17%)
Length = 235
Score = 88.6 bits (218), Expect = 3e-18
Identities = 45/77 (58%), Positives = 57/77 (73%)
Frame = +2
Query: 3 KGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGVAITSSGTKKGELFVADVNTQLKN 62
KGPGLY+DI K++RDLLFK +D FTIT ++ TGV ITSS KG+++ AD T +KN
Sbjct: 5 KGPGLYSDIDKRSRDLLFKVLWNDHNFTITPYTSTGV*ITSSEVMKGKMYSADGITNVKN 184
Query: 63 KNITTDIKVDTDSNLFT 79
K IT D+K+DT SNL T
Sbjct: 185KIITPDVKMDTISNLHT 235
>TC217509 similar to UP|Q6W2J1 (Q6W2J1) VDAC3.1, partial (36%)
Length = 792
Score = 87.4 bits (215), Expect = 6e-18
Identities = 47/101 (46%), Positives = 59/101 (57%), Gaps = 1/101 (0%)
Frame = +1
Query: 177 DKGDALNASYYHVVSPLTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGK 236
DKG L ASY + V V AE++H FST EN T+G+ ++D T +K R ++ GK
Sbjct: 1 DKGQTLKASYINYVDRPDGFTVAAEISHSFSTFENRFTIGSSQSIDSKTVVKTRFSDDGK 180
Query: 237 ASALIQHEWRPKSFFTISGEVD-TKAIEKSAKVGLALALKP 276
A+ Q WRP S T+S E D TK S K GLALALKP
Sbjct: 181 AAFQCQRAWRPNSLITLSAEYDSTKIFGSSTKFGLALALKP 303
>CF922533
Length = 593
Score = 81.6 bits (200), Expect = 3e-16
Identities = 37/39 (94%), Positives = 39/39 (99%)
Frame = -3
Query: 1 MAKGPGLYTDIGKKARDLLFKDYHSDQKFTITTFSPTGV 39
MAKGPGLY+DIGKKARDLLFKDYHSDQKFTITT+SPTGV
Sbjct: 507 MAKGPGLYSDIGKKARDLLFKDYHSDQKFTITTYSPTGV 391
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,694,986
Number of Sequences: 63676
Number of extensions: 91733
Number of successful extensions: 306
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of query: 276
length of database: 12,639,632
effective HSP length: 96
effective length of query: 180
effective length of database: 6,526,736
effective search space: 1174812480
effective search space used: 1174812480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0051b.2