BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0051b.10
(187 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Ar... 220 3e-58
TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin respons... 153 4e-38
BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Ara... 148 1e-36
TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mt... 116 5e-27
TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin respon... 103 5e-23
TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 ... 103 6e-23
AI443940 homologue to GP|19352043|db auxin response factor 6b {O... 98 3e-21
BI469301 homologue to GP|19352043|db auxin response factor 6b {O... 97 6e-21
TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin... 92 1e-19
AI856586 77 5e-15
TC233029 homologue to GB|AAN46837.1|24111405|BT001072 At5g62000/... 71 3e-13
BI498563 similar to GP|2245390|gb|A auxin response transcription... 59 1e-09
TC224267 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, ... 49 1e-06
TC204478 similar to UP|ARFB_ARATH (Q94JM3) Auxin response factor... 46 1e-05
TC210230 similar to UP|P82280 (P82280) RAV2 protein, partial (32%) 44 4e-05
BF008668 weakly similar to GP|23893346|emb auxin response factor... 41 3e-04
TC204476 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-lik... 39 0.001
TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein R... 39 0.001
AW781777 37 0.004
BM891533 similar to GP|10176918|db auxin response factor-like pr... 35 0.020
>BG507596 homologue to GP|9757747|dbj auxin response factor 4 {Arabidopsis
thaliana}, partial (15%)
Length = 433
Score = 220 bits (560), Expect = 3e-58
Identities = 107/125 (85%), Positives = 111/125 (88%)
Frame = +3
Query: 1 STSHMFCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCH 60
ST HMFCKTLTA DT TH GFSVPRRAAEDC PPLDYK+QRPSQELVAKDLHGVEWKF H
Sbjct: 57 STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKKQRPSQELVAKDLHGVEWKFRH 236
Query: 61 IYRG*PRWHLLTTGWSIFVSQNNLVSGDAVSFLRGENGELRLGIRRSVGPRNGLPESTVG 120
IYRG PR HLLTTGWSIFVSQ NLVSGDAV FLRGENGELRLGIRR+ PRNGLPES VG
Sbjct: 237 IYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVG 416
Query: 121 NQNSY 125
+Q+ Y
Sbjct: 417 SQSYY 431
>TC209860 similar to GB|AAB62404.1|2245390|ATU89296 auxin response
transcription factor 3 {Arabidopsis thaliana;} , partial
(32%)
Length = 687
Score = 153 bits (387), Expect = 4e-38
Identities = 72/89 (80%), Positives = 76/89 (84%)
Frame = +3
Query: 1 STSHMFCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCH 60
+T HMFCKTLTA DT TH GFSVPRRAAEDC PPLDY QQRPSQELVAKDLHG EW+F H
Sbjct: 420 TTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRH 599
Query: 61 IYRG*PRWHLLTTGWSIFVSQNNLVSGDA 89
IYRG PR HLLTTGWS FV++ LVSGDA
Sbjct: 600 IYRGQPRRHLLTTGWSAFVNKKKLVSGDA 686
>BG790017 similar to PIR|T08917|T08 auxin response factor 9 - Arabidopsis
thaliana, partial (21%)
Length = 440
Score = 148 bits (374), Expect = 1e-36
Identities = 70/119 (58%), Positives = 85/119 (70%)
Frame = +1
Query: 4 HMFCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIYR 63
H FCK LTA DT TH GFSV R+ A +CLP LD + P+QELVAKDL G EW+F HI+R
Sbjct: 82 HSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLQGFEWRFKHIFR 261
Query: 64 G*PRWHLLTTGWSIFVSQNNLVSGDAVSFLRGENGELRLGIRRSVGPRNGLPESTVGNQ 122
G PR HLLTTGWS FV+ LV+GD FLRG NGELR+G+RR ++ +P S + +Q
Sbjct: 262 GQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRRIAPLQSSMPSSVISSQ 438
>TC212372 similar to GB|AAN46837.1|24111405|BT001072 At5g62000/mtg10_20
{Arabidopsis thaliana;} , partial (31%)
Length = 878
Score = 116 bits (291), Expect = 5e-27
Identities = 54/89 (60%), Positives = 67/89 (74%)
Frame = +1
Query: 4 HMFCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIYR 63
H FCKTLTA DT TH GFSV RR A++CLPPLD +Q P+QELVAKDLHG W+F HI+R
Sbjct: 583 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNXWRFRHIFR 762
Query: 64 G*PRWHLLTTGWSIFVSQNNLVSGDAVSF 92
G PR HLL +GW++FV+ + + G + F
Sbjct: 763 GQPRKHLLQSGWNVFVTPXSXLLGMRLXF 849
>TC227705 similar to GB|AAM91657.1|22136676|AY133723 auxin response factor 1
{Arabidopsis thaliana;} , partial (54%)
Length = 1772
Score = 103 bits (257), Expect = 5e-23
Identities = 46/101 (45%), Positives = 69/101 (67%)
Frame = +3
Query: 62 YRG*PRWHLLTTGWSIFVSQNNLVSGDAVSFLRGENGELRLGIRRSVGPRNGLPESTVGN 121
+ G P+ HLLTTGWS+FVS L +GDA FLRGENGELR+G+RR + ++ +P S + +
Sbjct: 159 FPGQPKRHLLTTGWSVFVSSKKLAAGDAFIFLRGENGELRVGVRRVMRQQSNVPSSVISS 338
Query: 122 QNSYPHILSVVANVISTRSMFHVFYSPRASNSDFVFPYQKY 162
+ + +L+ ++ I+T ++F VFY PR S S+F+ KY
Sbjct: 339 HSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKY 461
>TC233160 similar to UP|Q8S976 (Q8S976) Auxin response factor 10 (Fragment),
partial (26%)
Length = 658
Score = 103 bits (256), Expect = 6e-23
Identities = 62/166 (37%), Positives = 79/166 (47%), Gaps = 43/166 (25%)
Frame = +2
Query: 33 PPLDYKQQRPSQELVAKDLHGVEWKFCHIYRG*PRWHLLTTGWSIFVSQNNLVSGDAVSF 92
P LDY P Q ++AKD+HG WKF HIYRG PR HLLTTGWS FV+ L +GD++ F
Sbjct: 5 PRLDYSVDPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLFAGDSIVF 184
Query: 93 LRGENGELRLGIRRSV-----------------------------------------GPR 111
LR ENG+L +GIRR+ G
Sbjct: 185 LRAENGDLCVGIRRAKKGICGGLETSSGWNPAGGNCHIPYGGFSPFFREDDNRISRNGNS 364
Query: 112 NGLPEST--VGNQNSYPHILSVVANVISTRSMFHVFYSPRASNSDF 155
NGL S +G P +S +N+ + + F V Y PRAS +F
Sbjct: 365 NGLNPSVSMMGKGKVRPEAVSEASNLAANKKPFEVVYYPRASTPEF 502
>AI443940 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (14%)
Length = 391
Score = 97.8 bits (242), Expect = 3e-21
Identities = 44/62 (70%), Positives = 51/62 (81%)
Frame = +3
Query: 3 SHMFCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIY 62
++ FCKTLTA DT TH GFSVPRRAAE PPLD+ QQ P+QEL+A+DLHG EWKF HI+
Sbjct: 201 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIF 380
Query: 63 RG 64
RG
Sbjct: 381 RG 386
>BI469301 homologue to GP|19352043|db auxin response factor 6b {Oryza
sativa}, partial (15%)
Length = 422
Score = 96.7 bits (239), Expect = 6e-21
Identities = 44/62 (70%), Positives = 50/62 (79%)
Frame = +3
Query: 3 SHMFCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIY 62
++ FCKTLTA DT TH GFSVPRRAAE PPLDY QQ P+QEL+A+DLH EWKF HI+
Sbjct: 234 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIF 413
Query: 63 RG 64
RG
Sbjct: 414 RG 419
>TC233176 weakly similar to GB|AAL07033.1|15810291|AY056184 auxin response
factor ARF17 {Arabidopsis thaliana;} , partial (17%)
Length = 958
Score = 92.4 bits (228), Expect = 1e-19
Identities = 44/89 (49%), Positives = 53/89 (59%)
Frame = +2
Query: 6 FCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVAKDLHGVEWKFCHIYRG* 65
F K LT D FSVPR A+ C PPLD++ P L D+HGVEW+F HIY G
Sbjct: 218 FAKILTPSDANNGDDFSVPRFCADSCFPPLDFRTDLPV*LLSVADIHGVEWRFRHIYHGT 397
Query: 66 PRWHLLTTGWSIFVSQNNLVSGDAVSFLR 94
PR H T GWS FV+ LV+GD V F++
Sbjct: 398 PRHHFFTIGWSKFVNHKKLVAGDTVIFVK 484
>AI856586
Length = 321
Score = 77.0 bits (188), Expect = 5e-15
Identities = 39/87 (44%), Positives = 55/87 (62%)
Frame = +1
Query: 70 LLTTGWSIFVSQNNLVSGDAVSFLRGENGELRLGIRRSVGPRNGLPESTVGNQNSYPHIL 129
LLTTGWS+FVS L +GD+V F+R E L LGIRR+ + L S + + + + IL
Sbjct: 4 LLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRQQPALSSSVISSDSMHIGIL 183
Query: 130 SVVANVISTRSMFHVFYSPRASNSDFV 156
+ A+ + S F +FY+PRAS S+FV
Sbjct: 184 AAAAHAAANNSPFTIFYNPRASPSEFV 264
>TC233029 homologue to GB|AAN46837.1|24111405|BT001072 At5g62000/mtg10_20
{Arabidopsis thaliana;} , partial (23%)
Length = 1004
Score = 71.2 bits (173), Expect = 3e-13
Identities = 41/121 (33%), Positives = 59/121 (47%), Gaps = 35/121 (28%)
Frame = +1
Query: 64 G*PRWHLLTTGWSIFVSQNNLVSGDAVSFLR----------------------------- 94
G PR HLL +GWS+FVS LV+GDA FLR
Sbjct: 238 GQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRLVG*LMDRVLDFTGFFLCFFLVFYLVAPT 417
Query: 95 ------GENGELRLGIRRSVGPRNGLPESTVGNQNSYPHILSVVANVISTRSMFHVFYSP 148
GENGELR+G+RR++ + +P S + + + + +L+ + I T +MF V+Y P
Sbjct: 418 NLETFRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKP 597
Query: 149 R 149
R
Sbjct: 598 R 600
Score = 46.6 bits (109), Expect = 7e-06
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = +3
Query: 36 DYKQQRPSQELVAKDLHGVEWKFCHIYRG*PRWHLLTT 73
D +Q P+QELVAKDLH EW+F HI+RG ++LL T
Sbjct: 45 DMSKQPPTQELVAKDLHANEWRFRHIFRG--NYYLLIT 152
>BI498563 similar to GP|2245390|gb|A auxin response transcription factor 3;
ARF3 {Arabidopsis thaliana}, partial (9%)
Length = 258
Score = 58.9 bits (141), Expect = 1e-09
Identities = 26/35 (74%), Positives = 28/35 (79%)
Frame = -3
Query: 1 STSHMFCKTLTAFDTITHRGFSVPRRAAEDCLPPL 35
+T HMFCKTLT +T TH GFSVP RAAEDC PPL
Sbjct: 208 TTPHMFCKTLTTSNTSTHGGFSVPYRAAEDCFPPL 104
>TC224267 similar to UP|Q6L8U3 (Q6L8U3) Auxin response factor 1, partial
(13%)
Length = 421
Score = 48.9 bits (115), Expect = 1e-06
Identities = 27/81 (33%), Positives = 44/81 (53%)
Frame = +3
Query: 103 GIRRSVGPRNGLPESTVGNQNSYPHILSVVANVISTRSMFHVFYSPRASNSDFVFPYQKY 162
GI+R+ + L S + + + + IL+ A+ S S F +FY+PRAS S+FV P KY
Sbjct: 6 GIKRANRQQPALFSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKY 185
Query: 163 AKSIHDNKRNEPSHRVMEERD 183
K++ + R+M E +
Sbjct: 186 NKALFNQVSLGMRFRMMFETE 248
>TC204478 similar to UP|ARFB_ARATH (Q94JM3) Auxin response factor 2
(ARF1-binding protein) (ARF1-BP), partial (37%)
Length = 1975
Score = 45.8 bits (107), Expect = 1e-05
Identities = 18/56 (32%), Positives = 35/56 (62%)
Frame = +3
Query: 114 LPESTVGNQNSYPHILSVVANVISTRSMFHVFYSPRASNSDFVFPYQKYAKSIHDN 169
+P S + + + + +L+ + I T +MF V+Y PR S ++F+ PY +Y +S+ +N
Sbjct: 9 VPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNN 176
>TC210230 similar to UP|P82280 (P82280) RAV2 protein, partial (32%)
Length = 769
Score = 43.9 bits (102), Expect = 4e-05
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Frame = +3
Query: 5 MFCKTLTAFDTITHRGFSVPRRAAE----------DCLPPLDYKQQRPSQELVAKDLHGV 54
+F KT+T D +P++ AE + P + L +D+ G
Sbjct: 66 LFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSGSGDESSPCVAGASAAKGMLLNFEDVGGK 245
Query: 55 EWKFCHIYRG*PRWHLLTTGWSIFVSQNNLVSGDAVSFLRGENGELRLGI 104
W+F + Y + ++LT GWS FV + NL +GDAV F + + +L I
Sbjct: 246 VWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDAVQFFKSTGPDRQLYI 395
>BF008668 weakly similar to GP|23893346|emb auxin response factor 1 {Oryza
sativa (japonica cultivar-group)}, partial (10%)
Length = 265
Score = 41.2 bits (95), Expect = 3e-04
Identities = 21/76 (27%), Positives = 44/76 (57%)
Frame = +2
Query: 94 RGENGELRLGIRRSVGPRNGLPESTVGNQNSYPHILSVVANVISTRSMFHVFYSPRASNS 153
R ENGE R+G+RR++ + +P S + + + +L+ + I T ++F VF+ P ++
Sbjct: 11 RRENGEPRVGVRRAM*QQGYVPSSVFSSHSMHLGVLASGWHAILTGTIFTVFFKP*NHSA 190
Query: 154 DFVFPYQKYAKSIHDN 169
+F P +Y ++ ++
Sbjct: 191 EFFGPGDQYMGALKNS 238
>TC204476 similar to UP|Q84QI6 (Q84QI6) Auxin response factor-like protein,
partial (43%)
Length = 2243
Score = 39.3 bits (90), Expect = 0.001
Identities = 15/42 (35%), Positives = 28/42 (65%)
Frame = +3
Query: 128 ILSVVANVISTRSMFHVFYSPRASNSDFVFPYQKYAKSIHDN 169
+L+ + I T ++F V+Y PR S ++F+ PY +Y +S+ +N
Sbjct: 6 VLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNN 131
>TC218282 similar to UP|RAV1_ARATH (Q9ZWM9) DNA-binding protein RAV1, partial
(61%)
Length = 1517
Score = 39.3 bits (90), Expect = 0.001
Identities = 20/56 (35%), Positives = 31/56 (54%)
Frame = +2
Query: 49 KDLHGVEWKFCHIYRG*PRWHLLTTGWSIFVSQNNLVSGDAVSFLRGENGELRLGI 104
+D+ G W+F + Y + ++LT GWS FV + NL +GD F R + +L I
Sbjct: 920 EDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTDCFHRSTGPDKQLYI 1087
>AW781777
Length = 349
Score = 37.4 bits (85), Expect = 0.004
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +3
Query: 5 MFCKTLTAFDTITHRGFSVPRRAAEDCLPPLDYKQQRPSQELVA--KDLHGVEWKFCHIY 62
MF K LT D +P++ AE P + L+ +D G W+F + Y
Sbjct: 54 MFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGDSGGSECKGLLLSFEDESGKCWRFRYSY 233
Query: 63 RG*PRWHLLTTGWSIFVSQNNLVSGDAVSFLR 94
+ ++LT GWS +V L +GD V F R
Sbjct: 234 WNSSQSYVLTKGWSRYVKDKRLDAGDVVLFER 329
>BM891533 similar to GP|10176918|db auxin response factor-like protein
{Arabidopsis thaliana}, partial (11%)
Length = 306
Score = 35.0 bits (79), Expect = 0.020
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3
Query: 4 HMFCKTLTAFDTITHRGFS 22
H FCKTLTA DT TH GFS
Sbjct: 249 HSFCKTLTASDTSTHGGFS 305
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,490,689
Number of Sequences: 63676
Number of extensions: 134244
Number of successful extensions: 589
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of query: 187
length of database: 12,639,632
effective HSP length: 92
effective length of query: 95
effective length of database: 6,781,440
effective search space: 644236800
effective search space used: 644236800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0051b.10