TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0051a.1
         (226 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC230710 weakly similar to UP|Q9SD82 (Q9SD82) Replication factor...    32  0.31
TC233765 similar to UP|Q8WZS6 (Q8WZS6) Related to BRR5 (Componen...    28  3.4
TC225715 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6...    28  4.4
TC220518                                                               28  4.4
TC231851 similar to UP|Q94F56 (Q94F56) AT5g56980/MHM17_10, parti...    28  4.4
TC219531                                                               27  5.8
TC215872 similar to UP|Q947H4 (Q947H4) Non-cell-autonomous prote...    27  5.8
TC217897 homologue to UP|Q9XHP4 (Q9XHP4) Peroxisomal copper-cont...    27  9.8

>TC230710 weakly similar to UP|Q9SD82 (Q9SD82) Replication factor A-like
           protein, partial (30%)
          Length = 861

 Score = 31.6 bits (70), Expect = 0.31
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 48  WYYHDCECNS-AAYSDGAQYYCEKCNKHVTP-TIRYKLLLNVADDTASATFTVFYRE 102
           WY     CN     S G+ Y+C+ C K     ++RY ++  V+D +A    +VF +E
Sbjct: 208 WYRACKTCNKKVTESFGSGYWCDGCQKSDEQCSLRYIMVAKVSDGSAETFISVFNQE 378


>TC233765 similar to UP|Q8WZS6 (Q8WZS6) Related to BRR5 (Component of
           pre-mRNA polyadenylation factor PF I), partial (9%)
          Length = 423

 Score = 28.1 bits (61), Expect = 3.4
 Identities = 11/24 (45%), Positives = 16/24 (65%)
 Frame = +1

Query: 15  CTILKSLPTKVQPQQRTIFIIYAT 38
           C +L  LP + QPQ+  +F+ YAT
Sbjct: 229 CCVLALLPRENQPQKARVFMTYAT 300


>TC225715 similar to GB|AAM16218.1|20334714|AY093957 At2g41900/T6D20.20
           {Arabidopsis thaliana;} , partial (42%)
          Length = 2142

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 18/76 (23%), Positives = 34/76 (44%)
 Frame = -1

Query: 45  TNDWYYHDCECNSAAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTASATFTVFYREGC 104
           + +W+  +  CNS+++SDGA         H   T    LL+   +     +      E C
Sbjct: 771 SQNWHRGEAVCNSSSHSDGA------AAGHQDQTSCSSLLVECHEHLGKTSID*I--EDC 616

Query: 105 YLMNKKGNEILEKMEK 120
           +L+N++   + E  +K
Sbjct: 615 FLVNEEPAHLAEPKQK 568


>TC220518 
          Length = 458

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 11/47 (23%), Positives = 24/47 (50%)
 Frame = +2

Query: 74  HVTPTIRYKLLLNVADDTASATFTVFYREGCYLMNKKGNEILEKMEK 120
           ++ P +    +LN+ DD     F  FY++    +N +G +  + ++K
Sbjct: 32  NLNPQLFCNEVLNIVDDVLDEAFNFFYQDASTKLNIEGTQRSQDLKK 172


>TC231851 similar to UP|Q94F56 (Q94F56) AT5g56980/MHM17_10, partial (12%)
          Length = 506

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 184 NTPPPILEDSNTPIKRRSDEGSITEVVGSNDAE 216
           +TP   +  +N+P    SD GS+T++  SND +
Sbjct: 218 STPSSSVSSTNSPPPVTSDSGSVTDIDLSNDKD 120


>TC219531 
          Length = 576

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 17/37 (45%), Positives = 18/37 (47%)
 Frame = +1

Query: 58  AAYSDGAQYYCEKCNKHVTPTIRYKLLLNVADDTASA 94
           AA   G  Y CEK    VTP I+Y   L    DT SA
Sbjct: 172 AAEPAGKGYNCEKAKSSVTPCIKY---LTSKVDTPSA 273


>TC215872 similar to UP|Q947H4 (Q947H4) Non-cell-autonomous protein pathway2,
           partial (24%)
          Length = 795

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 79  IRYKLLLNVADDTASATFTVFY 100
           I YKLL N  ++T   T+T+FY
Sbjct: 415 IHYKLLANEGNNTLHCTYTLFY 480


>TC217897 homologue to UP|Q9XHP4 (Q9XHP4) Peroxisomal copper-containing
          amine oxidase, complete
          Length = 2645

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 43 ESTNDWYYHDCECNSAAYSDGAQYYCEKCNKHVTPTIRYK 82
          +S N+ + H C C S  Y     YY E  N    P +R K
Sbjct: 45 KSGNNNWQHYCCCMSVEYYCSGIYYAELANPLQWPQLRKK 164


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,089,097
Number of Sequences: 63676
Number of extensions: 160438
Number of successful extensions: 754
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of query: 226
length of database: 12,639,632
effective HSP length: 94
effective length of query: 132
effective length of database: 6,654,088
effective search space: 878339616
effective search space used: 878339616
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)