BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0050.4
(236 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203387 similar to UP|Q9XEU0 (Q9XEU0) Zinc-finger protein 1, pa... 310 3e-85
TC203295 similar to UP|P93166 (P93166) SCOF-1, partial (52%) 310 5e-85
TC216904 UP|P93166 (P93166) SCOF-1, complete 265 1e-71
TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%) 241 2e-64
TC205046 similar to UP|P93166 (P93166) SCOF-1, partial (43%) 209 9e-55
TC205045 similar to UP|P93166 (P93166) SCOF-1, partial (45%) 196 6e-51
AW102471 95 2e-20
BE807394 87 9e-18
TC219656 similar to UP|O22086 (O22086) ZPT2-14, partial (57%) 77 5e-15
BM093731 similar to GP|2346978|dbj| ZPT2-14 {Petunia x hybrida},... 73 1e-13
BM187968 homologue to GP|2346974|dbj| ZPT2-12 {Petunia x hybrida... 71 4e-13
TC233289 69 1e-12
TC230715 similar to UP|Q39217 (Q39217) Zinc finger protein, part... 69 2e-12
TC210918 homologue to UP|P93713 (P93713) PEThy;ZPT2-5, partial (... 68 3e-12
TC203979 similar to UP|O22086 (O22086) ZPT2-14, partial (39%) 68 4e-12
TC203987 similar to UP|O22084 (O22084) ZPT2-12, partial (37%) 67 9e-12
TC209563 similar to UP|O22084 (O22084) ZPT2-12, partial (45%) 62 2e-10
BI945002 similar to PIR|T52382|T523 zinc finger protein ZPT4-4 ... 62 2e-10
AI966270 similar to GP|4666360|gb|A zinc-finger protein 1 {Datis... 57 7e-09
TC234818 similar to UP|O22082 (O22082) C2H2 zinc-finger protein ... 57 1e-08
>TC203387 similar to UP|Q9XEU0 (Q9XEU0) Zinc-finger protein 1, partial (51%)
Length = 1474
Score = 310 bits (795), Expect = 3e-85
Identities = 163/243 (67%), Positives = 189/243 (77%), Gaps = 8/243 (3%)
Frame = +3
Query: 1 MAMEALKSPTTAAPTFTPFQEPNHSYMVDAPWAKRKRSKRSRTDSHHNHASCTEEEYLAL 60
MA+EAL+SPTTA P+F+PF+E + SY+ + PW K KRSKRSRT+ H SCTEEEYLAL
Sbjct: 87 MALEALQSPTTATPSFSPFEETSLSYL-ETPWTKGKRSKRSRTEQQLQHPSCTEEEYLAL 263
Query: 61 CLIMLARGS----TAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKL 116
CLIMLARG + P ++ + AP++A KLSYKCSVC K F SYQALGGHKASHRKL
Sbjct: 264 CLIMLARGGAGSVSTAKPAVSDNNSAPLSAAKLSYKCSVCNKAFSSYQALGGHKASHRKL 443
Query: 117 AGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHYEGGGGASSTA 176
AG E+H TSSAVTTSSASNGGG+ H+CSIC K+F TGQALGGHKRCHYEGG A
Sbjct: 444 AG---ENHPTSSAVTTSSASNGGGRTHECSICHKTFSTGQALGGHKRCHYEGGNSA---- 602
Query: 177 TATASEGVGSTHS-HQRNFDLNLPAFPDFSASKFFVEEEVSSPLPSKKPRL---LPKIEI 232
TASEGVGSTH+ R+FDLNLPAFPDFSA +FFV++EV+SP PSKK R +PKIEI
Sbjct: 603 -VTASEGVGSTHTGSHRDFDLNLPAFPDFSA-RFFVDDEVTSPHPSKKSRFNLTIPKIEI 776
Query: 233 PHY 235
P Y
Sbjct: 777 PQY 785
>TC203295 similar to UP|P93166 (P93166) SCOF-1, partial (52%)
Length = 1328
Score = 310 bits (793), Expect = 5e-85
Identities = 163/243 (67%), Positives = 187/243 (76%), Gaps = 8/243 (3%)
Frame = +3
Query: 1 MAMEALKSPTTAAPTFTPFQEPNHSYMVDAPWAKRKRSKRSRTDSHHNHASCTEEEYLAL 60
MA+EAL+SP TA P+F+PF+E N SY+ + PW K KRSKRSR + H+SCTEEEYLAL
Sbjct: 96 MALEALQSPRTATPSFSPFEETNLSYL-ETPWTKGKRSKRSRMEQQLQHSSCTEEEYLAL 272
Query: 61 CLIMLARGST----AVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKL 116
CLIMLA G A P ++ + AP+ A KLSYKCSVC K F SYQALGGHKASHRKL
Sbjct: 273 CLIMLAHGGAGGVPAAKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGGHKASHRKL 452
Query: 117 AGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHYEGGGGASSTA 176
G E HSTSSAVTTSSASNGG + H+CSICQK+FPTGQALGGHKRCHYEGG A
Sbjct: 453 GG---EHHSTSSAVTTSSASNGGARTHECSICQKTFPTGQALGGHKRCHYEGGNSA---- 611
Query: 177 TATASEGVGSTHS-HQRNFDLNLPAFPDFSASKFFVEEEVSSPLPSKKPRL---LPKIEI 232
TASEGVGSTH+ R+FDLNLPAFPDFS ++FFV++EV+SP PSKK RL +PKIEI
Sbjct: 612 -VTASEGVGSTHTGSHRDFDLNLPAFPDFS-TRFFVDDEVTSPHPSKKSRLNLTIPKIEI 785
Query: 233 PHY 235
P Y
Sbjct: 786 PQY 794
>TC216904 UP|P93166 (P93166) SCOF-1, complete
Length = 1114
Score = 265 bits (677), Expect = 1e-71
Identities = 156/257 (60%), Positives = 175/257 (67%), Gaps = 22/257 (8%)
Frame = +2
Query: 1 MAMEALKSPTTAAPTFTPFQEPNHSYMVDAPWAKRKRSKRSRTDSHHNHASCTEEEYLAL 60
MA+EAL SPTT AP+F PF +P PWAKRKRSKRSR +H S EEEYLAL
Sbjct: 206 MALEALNSPTTTAPSF-PFDDPT------IPWAKRKRSKRSR-----DHPS--EEEYLAL 343
Query: 61 CLIMLARGSTAVT--------PKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKAS 112
CLIMLARG T P +P P + KLSYKCSVC+K+FPSYQALGGHKAS
Sbjct: 344 CLIMLARGGTTTVNNRHVSPPPPQPQPQPTPDPSTKLSYKCSVCDKSFPSYQALGGHKAS 523
Query: 113 HRKLAGAAAE---DHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHYEGG 169
HRKLAGAA + +TSSA TSSAS GGK H+CSIC KSFPTGQALGGHKRCHYEG
Sbjct: 524 HRKLAGAAEDQPPSTTTSSAAATSSAS--GGKAHECSICHKSFPTGQALGGHKRCHYEGN 697
Query: 170 GGA----SSTATATASEGVGSTHS----HQRNFDLNLPAFPDFSASKFFVEEEVSSPLP- 220
G S++ ASEGVGSTH+ H R+FDLN+PAFPDFS E+EV SP P
Sbjct: 698 GNGNNNNSNSVVTVASEGVGSTHTVSHGHHRDFDLNIPAFPDFSTK--VGEDEVESPHPV 871
Query: 221 SKKPRL--LPKIEIPHY 235
KKPRL +PKIEIP +
Sbjct: 872 MKKPRLFVIPKIEIPQF 922
>TC209064 similar to UP|P93166 (P93166) SCOF-1, partial (93%)
Length = 945
Score = 241 bits (615), Expect = 2e-64
Identities = 136/234 (58%), Positives = 156/234 (66%), Gaps = 10/234 (4%)
Frame = +3
Query: 1 MAMEALKSPTTAAPTFTPFQEPNHSYMVDAPWAKRKRSKRSRTDSHHNHASCTEEEYLAL 60
MA+E L SPTT AP+F PF +P PWAKRKRSKR D H S EEEYLAL
Sbjct: 93 MALETLNSPTTTAPSF-PFDDPT------IPWAKRKRSKRCSRD----HPS--EEEYLAL 233
Query: 61 CLIMLARGSTAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLAGAA 120
CLIMLARG T +P P + KLSYKCSVC K+FPSYQALGGHKASHRKLA +
Sbjct: 234 CLIMLARGGTTRRVSTPPPQPTPDPSTKLSYKCSVCNKSFPSYQALGGHKASHRKLAASG 413
Query: 121 AEDHSTSSAVTTSSASN-GGGKVHQCSICQKSFPTGQALGGHKRCHYEGGGGA----SST 175
ED T+++ SSA+ GG+ H+CSIC KSFPTGQALGGHKRCHYEG S++
Sbjct: 414 GEDQPTTTSSAASSANTASGGRTHECSICHKSFPTGQALGGHKRCHYEGNSNGNNNNSNS 593
Query: 176 ATATASEGVGSTHS----HQRNFDLNLPAFPDFSASKFFVEEEVSSPLP-SKKP 224
+ ASEGVGSTH+ H R+FDLN+PAFPD S E+EV SP P KKP
Sbjct: 594 SVTAASEGVGSTHTVSHGHHRDFDLNIPAFPDGSTK--VGEDEVESPHPVMKKP 749
>TC205046 similar to UP|P93166 (P93166) SCOF-1, partial (43%)
Length = 1110
Score = 209 bits (532), Expect = 9e-55
Identities = 129/260 (49%), Positives = 157/260 (59%), Gaps = 34/260 (13%)
Frame = +1
Query: 1 MAMEALKSPTTAAPTFTPFQEPNHSYMVDA--PWAKRKRSKRSRTDSHHNHASCTEEEYL 58
MA+EAL SPT A F +QE + PWAKRKRSKR R +S EEEYL
Sbjct: 46 MALEALNSPTAATTPFRGYQEEEEEVDLHLREPWAKRKRSKRPRFES--------EEEYL 201
Query: 59 ALCLIMLARGSTAVTPKLTLSRPAPVTAE---KLSYKCSVCEKTFPSYQALGGHKASHRK 115
ALCLIMLA+ +L S + A KLS++C+VC K FPSYQALGGHKASHRK
Sbjct: 202 ALCLIMLAQSGNNNNTQLPSSSQSHKEASPPLKLSHRCTVCNKAFPSYQALGGHKASHRK 381
Query: 116 LAGAAAEDHSTSSAVTTSSASN--------GGGKVHQCSICQKSFPTGQALGGHKRCHYE 167
A++E ++T+SAV S+ +N GGG++H+CSIC KSFPTGQALGGHKRCHY+
Sbjct: 382 ---ASSESNTTASAVAVSATANDSVSASTVGGGRMHECSICHKSFPTGQALGGHKRCHYD 552
Query: 168 GG--------GGASSTATATASEGVGSTHSHQ-RNFDLNLPAFP----------DFSASK 208
GG G +S+ T+ G S+ SH R FDLNLPA P DF K
Sbjct: 553 GGNNHSNSNANGNNSSGVTTSDGGAASSSSHAFRGFDLNLPA-PLTEFWSPAGFDFGKKK 729
Query: 209 FFVEEEVSSPLP--SKKPRL 226
VE+EV SPLP +K+PRL
Sbjct: 730 VGVEQEVESPLPVTAKRPRL 789
>TC205045 similar to UP|P93166 (P93166) SCOF-1, partial (45%)
Length = 1150
Score = 196 bits (499), Expect = 6e-51
Identities = 122/260 (46%), Positives = 152/260 (57%), Gaps = 34/260 (13%)
Frame = +2
Query: 1 MAMEALKSPTTAAPTFTPFQEPNHSYMVDA----PWAKRKRSKRSRTDSHHNHASCTEEE 56
MA+EAL SPT A F +QE D PWAKRKRSKR R + TEEE
Sbjct: 98 MALEALNSPTAATTPFRGYQEEEEDEEADLHLREPWAKRKRSKRPRFE--------TEEE 253
Query: 57 YLALCLIMLARG--------STAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGG 108
YLALCLIMLA+ + P +LS KL+++C+VC K F SYQALGG
Sbjct: 254 YLALCLIMLAQSGNTRNIHNNNTQLPSSSLSDKEASPPVKLTHRCTVCNKAFGSYQALGG 433
Query: 109 HKASHRKLAGAAAEDHSTSSAV--TTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHY 166
HKASHRK + + S S+ + S+++ GGG++H+CSIC KSFPTGQALGGHKRCHY
Sbjct: 434 HKASHRKASSESNPTASVSALANDSVSASTVGGGRMHECSICHKSFPTGQALGGHKRCHY 613
Query: 167 EGGGGAS-------STATATASEGVGSTHSHQ-RNFDLNLPAFP----------DFSASK 208
+GG S +++ AT S+G ++ SH R FDLNLPA P DF K
Sbjct: 614 DGGNNHSNSNANGNNSSGATTSDGGAASSSHTLRGFDLNLPA-PLTEFWSPMGFDFGKKK 790
Query: 209 FFVEEEVSSPLP--SKKPRL 226
E+EV SPLP +K+PRL
Sbjct: 791 VGGEQEVESPLPVTAKRPRL 850
>AW102471
Length = 361
Score = 95.1 bits (235), Expect = 2e-20
Identities = 55/121 (45%), Positives = 69/121 (56%), Gaps = 4/121 (3%)
Frame = +2
Query: 2 AMEALKSPTTAAPTFTPFQEPNHSYMVDAPWAKRKRSKRSRTDSHHNHASCTEEEYLALC 61
A+E SPTTA P + F+E S + + P K KR S + N + + ALC
Sbjct: 2 ALEVF*SPTTATP*LSSFEETRPS-LFETPGTKGKRISVSARSINCNTSYAPRKSTCALC 178
Query: 62 LIMLARGSTA----VTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLA 117
L+MLARG P ++ + AP++ KLSYKCSVC K F SYQALGGH ASHRKL
Sbjct: 179 LMMLARGGAGSVYTAKPAVSDNNSAPLSCAKLSYKCSVCNKAFCSYQALGGHMASHRKLC 358
Query: 118 G 118
G
Sbjct: 359 G 361
>BE807394
Length = 262
Score = 86.7 bits (213), Expect = 9e-18
Identities = 48/93 (51%), Positives = 55/93 (58%)
Frame = +2
Query: 37 RSKRSRTDSHHNHASCTEEEYLALCLIMLARGSTAVTPKLTLSRPAPVTAEKLSYKCSVC 96
RSKR NH S EEE+LALCLIMLARG T +P P L +C C
Sbjct: 2 RSKRCS----RNHPS--EEEFLALCLIMLARGGTTRRVSTPPPQPTPDPFTTLRCRCFCC 163
Query: 97 EKTFPSYQALGGHKASHRKLAGAAAEDHSTSSA 129
K FPSY ALGGHKA+HRKLA EDH T+++
Sbjct: 164 NKRFPSYHALGGHKATHRKLAACGGEDHPTTTS 262
>TC219656 similar to UP|O22086 (O22086) ZPT2-14, partial (57%)
Length = 797
Score = 77.4 bits (189), Expect = 5e-15
Identities = 55/155 (35%), Positives = 74/155 (47%), Gaps = 11/155 (7%)
Frame = +3
Query: 58 LALCLIMLARGSTAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLA 117
+A CL++L+RGS + S V ++C C + FPS+QALGGH+ASH+K
Sbjct: 165 MANCLMLLSRGSEFEATYSSTSMSNRV------FECKTCNRQFPSFQALGGHRASHKKPR 326
Query: 118 GAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCHYE---GGGGASS 174
A + S K H+CSIC F GQALGGH R H G +S
Sbjct: 327 LMAGDIEG-----QLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNVHNS 491
Query: 175 TATATASEGVGSTHSHQRN--------FDLNLPAF 201
TAT+++S G S ++ DLNL F
Sbjct: 492 TATSSSSGGSSFDSSPKKKADNKRVLVLDLNLTPF 596
>BM093731 similar to GP|2346978|dbj| ZPT2-14 {Petunia x hybrida}, partial
(39%)
Length = 421
Score = 72.8 bits (177), Expect = 1e-13
Identities = 38/104 (36%), Positives = 51/104 (48%)
Frame = +1
Query: 62 LIMLARGSTAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLAGAAA 121
+I LA ++ S+P T ++C C + FPS+QALGGH+ASH+K
Sbjct: 61 IIRLAESLMQLSRVQQKSKPLLKTFSPTEFECKTCNRKFPSFQALGGHRASHKK---PKF 231
Query: 122 EDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCH 165
E + K+H+CSIC F GQALGGH R H
Sbjct: 232 EGEELKEEAKKGLSLGNKPKMHECSICGMEFSLGQALGGHMRKH 363
Score = 33.1 bits (74), Expect = 0.11
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 91 YKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTTSSA 135
++CS+C F QALGGH HR GA +E+++ + + + A
Sbjct: 295 HECSICGMEFSLGQALGGHMRKHR---GATSENNNEAFSSSIKQA 420
>BM187968 homologue to GP|2346974|dbj| ZPT2-12 {Petunia x hybrida}, partial
(29%)
Length = 424
Score = 71.2 bits (173), Expect = 4e-13
Identities = 42/108 (38%), Positives = 60/108 (54%), Gaps = 2/108 (1%)
Frame = +2
Query: 58 LALCLIMLARGSTAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHR--K 115
LA CL+ML+ KL ++ E + ++C C + F S+QALGGH+ASH+ K
Sbjct: 137 LANCLMMLSHPQQ--NKKLLQTK-----IEAVKFECKTCNRKFSSFQALGGHRASHKRSK 295
Query: 116 LAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKR 163
L G + H+ S ++ K+H+CSIC + F GQALGGH R
Sbjct: 296 LEGDELKAHAISLSLGNKP------KMHECSICGQEFSLGQALGGHMR 421
Score = 29.6 bits (65), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 144 QCSICQKSFPTGQALGGHKRCH 165
+C C + F + QALGGH+ H
Sbjct: 218 ECKTCNRKFSSFQALGGHRASH 283
>TC233289
Length = 961
Score = 69.3 bits (168), Expect = 1e-12
Identities = 57/156 (36%), Positives = 72/156 (45%), Gaps = 10/156 (6%)
Frame = +1
Query: 55 EEYLALCLIMLARGS-------TAVTPKLTLSRPAPVTAE---KLSYKCSVCEKTFPSYQ 104
EE LA+CL+ML+R + A PK S + + + + + C C K+F S +
Sbjct: 496 EEDLAMCLMMLSRDTWQEHKLANAGPPKTRCSSGSEIKLKNKVRSKHLCHACHKSFRSSR 675
Query: 105 ALGGHKASHRKLAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRC 164
ALG SHR L E A S SN KV +C C K F +GQALGGHKR
Sbjct: 676 ALG----SHRTLCSPRLE------AQNNSIISNNNIKVFECPFCYKLFGSGQALGGHKRS 825
Query: 165 HYEGGGGASSTATATASEGVGSTHSHQRNFDLNLPA 200
H SS++T S Q DLNLPA
Sbjct: 826 HLI----PSSSSTVN-----HSVKLKQSFIDLNLPA 906
Score = 37.0 bits (84), Expect = 0.008
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 143 HQCSICQKSFPTGQALGGHKRCH 165
H+C +C +SF G+ALGGH + H
Sbjct: 166 HKCKLCSRSFSNGRALGGHMKAH 234
Score = 30.8 bits (68), Expect = 0.56
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 91 YKCSVCEKTFPSYQALGGHKASH 113
+KC +C ++F + +ALGGH +H
Sbjct: 166 HKCKLCSRSFSNGRALGGHMKAH 234
>TC230715 similar to UP|Q39217 (Q39217) Zinc finger protein, partial (41%)
Length = 629
Score = 68.6 bits (166), Expect = 2e-12
Identities = 35/87 (40%), Positives = 45/87 (51%)
Frame = +2
Query: 79 SRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTTSSASNG 138
++P T ++C C + F S+QALGGH+ASH+K A E A
Sbjct: 128 NKPLLKTFSPTEFECKTCNRKFSSFQALGGHRASHKKPKFEAEE--------LKEEAKKT 283
Query: 139 GGKVHQCSICQKSFPTGQALGGHKRCH 165
K+H+CSIC F GQALGGH R H
Sbjct: 284 KPKMHECSICGMEFSLGQALGGHMRKH 364
Score = 35.4 bits (80), Expect = 0.023
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 78 LSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTT 132
L A T K+ ++CS+C F QALGGH HR GA +E+ + + A+++
Sbjct: 260 LKEEAKKTKPKM-HECSICGMEFSLGQALGGHMRKHR---GAISENDNNNEALSS 412
>TC210918 homologue to UP|P93713 (P93713) PEThy;ZPT2-5, partial (55%)
Length = 729
Score = 68.2 bits (165), Expect = 3e-12
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Frame = +3
Query: 85 TAEKLSYKCSVCEKTFPSYQALGGHKASHRK--LAGAAAEDHSTSSAVTTSSASNGGGKV 142
T+ ++C C + F S+QALGGH+ASH+K L G S + S K
Sbjct: 198 TSNNRVFECKTCNRRFASFQALGGHRASHKKPRLMG-------ESDSQVLIHGSPPKPKT 356
Query: 143 HQCSICQKSFPTGQALGGHKRCHYEGGGGASSTATATASEGVGSTHSHQRNFDLNLP 199
H+CSIC F GQALGGH R H ++ T + + S++S D LP
Sbjct: 357 HECSICGLEFAIGQALGGHMRRH-RAAAASNGNMHTTINSWLSSSNSGGSTVDNTLP 524
Score = 35.8 bits (81), Expect = 0.017
Identities = 13/35 (37%), Positives = 21/35 (59%)
Frame = +3
Query: 131 TTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCH 165
TT++ + +V +C C + F + QALGGH+ H
Sbjct: 180 TTTNLNTSNNRVFECKTCNRRFASFQALGGHRASH 284
>TC203979 similar to UP|O22086 (O22086) ZPT2-14, partial (39%)
Length = 820
Score = 67.8 bits (164), Expect = 4e-12
Identities = 33/79 (41%), Positives = 47/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 89 LSYKCSVCEKTFPSYQALGGHKASHR--KLAGAAAEDHSTSSAVTTSSASNGGGKVHQCS 146
+ ++C C + F S+QALGGH+ASH+ KL G ++ + S ++ K+H+CS
Sbjct: 306 VEFECKTCNRKFSSFQALGGHRASHKRQKLEGEELKEQAKSLSLWNKP------KMHECS 467
Query: 147 ICQKSFPTGQALGGHKRCH 165
IC F GQALGGH R H
Sbjct: 468 ICGLEFSLGQALGGHMRKH 524
Score = 30.4 bits (67), Expect = 0.73
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 91 YKCSVCEKTFPSYQALGGHKASHR 114
++CS+C F QALGGH HR
Sbjct: 456 HECSICGLEFSLGQALGGHMRKHR 527
Score = 30.0 bits (66), Expect = 0.96
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +3
Query: 139 GGKVHQCSICQKSFPTGQALGGHKRCH 165
G +C C + F + QALGGH+ H
Sbjct: 300 GSVEFECKTCNRKFSSFQALGGHRASH 380
>TC203987 similar to UP|O22084 (O22084) ZPT2-12, partial (37%)
Length = 742
Score = 66.6 bits (161), Expect = 9e-12
Identities = 32/79 (40%), Positives = 47/79 (58%), Gaps = 2/79 (2%)
Frame = +1
Query: 89 LSYKCSVCEKTFPSYQALGGHKASHR--KLAGAAAEDHSTSSAVTTSSASNGGGKVHQCS 146
+ ++C C + F S+QALGGH+ASH+ KL G ++ + + ++ K+H+CS
Sbjct: 232 VEFECKTCSRKFSSFQALGGHRASHKRQKLEGEELKEQAKTLSLWNKP------KMHECS 393
Query: 147 ICQKSFPTGQALGGHKRCH 165
IC F GQALGGH R H
Sbjct: 394 ICGLEFSLGQALGGHMRKH 450
Score = 30.4 bits (67), Expect = 0.73
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 91 YKCSVCEKTFPSYQALGGHKASHR 114
++CS+C F QALGGH HR
Sbjct: 382 HECSICGLEFSLGQALGGHMRKHR 453
Score = 30.0 bits (66), Expect = 0.96
Identities = 11/27 (40%), Positives = 15/27 (54%)
Frame = +1
Query: 139 GGKVHQCSICQKSFPTGQALGGHKRCH 165
G +C C + F + QALGGH+ H
Sbjct: 226 GAVEFECKTCSRKFSSFQALGGHRASH 306
>TC209563 similar to UP|O22084 (O22084) ZPT2-12, partial (45%)
Length = 768
Score = 62.4 bits (150), Expect = 2e-10
Identities = 37/108 (34%), Positives = 54/108 (49%)
Frame = +2
Query: 58 LALCLIMLARGSTAVTPKLTLSRPAPVTAEKLSYKCSVCEKTFPSYQALGGHKASHRKLA 117
+A CL++L + + T + P ++ +KC C + F S+QALGGH+ASH+K
Sbjct: 131 MANCLMLLTKVGESET-----NYPISKGSDIGDFKCKTCNRRFSSFQALGGHRASHKK-P 292
Query: 118 GAAAEDHSTSSAVTTSSASNGGGKVHQCSICQKSFPTGQALGGHKRCH 165
D S + + ++H C IC F GQALGGH R H
Sbjct: 293 KLMVTDLSCHQELPNPTMKQ-QPRMHPCPICGLEFAIGQALGGHMRKH 433
Score = 30.8 bits (68), Expect = 0.56
Identities = 17/55 (30%), Positives = 26/55 (46%), Gaps = 2/55 (3%)
Frame = +2
Query: 91 YKCSVCEKTFPSYQALGGHKASHRKLA--GAAAEDHSTSSAVTTSSASNGGGKVH 143
+ C +C F QALGGH HR G S+S ++ S+ +G K++
Sbjct: 365 HPCPICGLEFAIGQALGGHMRKHRTAINDGLLCGKPSSSLSILKESSKDGDQKLN 529
>BI945002 similar to PIR|T52382|T523 zinc finger protein ZPT4-4 C2H2-type
[imported] - garden petunia, partial (8%)
Length = 389
Score = 62.4 bits (150), Expect = 2e-10
Identities = 32/62 (51%), Positives = 40/62 (63%), Gaps = 1/62 (1%)
Frame = +1
Query: 140 GKVHQCSICQKSFPTGQALGGHKRCHYEGGGGASSTATATASEGVGSTHSHQRN-FDLNL 198
GKVH+CSIC K FP+GQALGGHKR H+ GG S+ + + + R+ FDLNL
Sbjct: 1 GKVHECSICLKIFPSGQALGGHKRSHHLAGGSESARNFQSQTIVLQEAAPEIRDFFDLNL 180
Query: 199 PA 200
PA
Sbjct: 181 PA 186
Score = 43.9 bits (102), Expect = 6e-05
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 91 YKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTTSSAS 136
++CS+C K FPS QALGGHK SH G+ + + S + A+
Sbjct: 10 HECSICLKIFPSGQALGGHKRSHHLAGGSESARNFQSQTIVLQEAA 147
>AI966270 similar to GP|4666360|gb|A zinc-finger protein 1 {Datisca
glomerata}, partial (11%)
Length = 130
Score = 57.0 bits (136), Expect = 7e-09
Identities = 30/46 (65%), Positives = 32/46 (69%)
Frame = +2
Query: 90 SYKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTTSSA 135
SY CS C F YQALGGHKASHRKLAG E+H SSA T SS+
Sbjct: 2 SYTCSGCNTAFYPYQALGGHKASHRKLAG---ENHPISSAETMSSS 130
Score = 28.9 bits (63), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (56%)
Frame = +2
Query: 143 HQCSICQKSFPTGQALGGHKRCHYEGGG 170
+ CS C +F QALGGHK H + G
Sbjct: 5 YTCSGCNTAFYPYQALGGHKASHRKLAG 88
>TC234818 similar to UP|O22082 (O22082) C2H2 zinc-finger protein ZPT2-10,
partial (19%)
Length = 684
Score = 56.6 bits (135), Expect = 1e-08
Identities = 40/113 (35%), Positives = 51/113 (44%)
Frame = +3
Query: 91 YKCSVCEKTFPSYQALGGHKASHRKLAGAAAEDHSTSSAVTTSSASNGGGKVHQCSICQK 150
++C C KTF S +ALG SHR + + D + + QC C K
Sbjct: 216 HQCQSCGKTFRSSRALG----SHRSICEGSGNDSN----------------IFQCPFCSK 335
Query: 151 SFPTGQALGGHKRCHYEGGGGASSTATATASEGVGSTHSHQRNFDLNLPAFPD 203
F +GQALGGHKR H SS+ TA S + DLNLPA P+
Sbjct: 336 VFGSGQALGGHKRSHLM----PSSSTTANND----SVRLKESFIDLNLPAPPE 470
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.313 0.126 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,241,283
Number of Sequences: 63676
Number of extensions: 192355
Number of successful extensions: 1305
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of query: 236
length of database: 12,639,632
effective HSP length: 94
effective length of query: 142
effective length of database: 6,654,088
effective search space: 944880496
effective search space used: 944880496
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0050.4