BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0050.15
(95 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC218072 weakly similar to UP|APG_BRANA (P40603) Anter-specific ... 145 2e-36
TC218071 similar to UP|Q01979 (Q01979) Proline-rich protein, par... 144 7e-36
TC220190 weakly similar to UP|Q84630 (Q84630) A316R protein, par... 54 1e-08
TC229217 weakly similar to UP|Q9FM99 (Q9FM99) Similarity to carb... 47 1e-06
TC230423 similar to UP|Q41187 (Q41187) Glycine-rich protein (Fra... 45 5e-06
TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protei... 44 2e-05
TC204867 similar to UP|Q9LKY8 (Q9LKY8) Proline-rich protein, par... 42 5e-05
TC214236 similar to UP|Q9M6T6 (Q9M6T6) Proline-rich protein (Ext... 42 7e-05
BE057136 similar to PIR|JQ1060|JQ10 glycine-rich protein 1 - Ara... 41 9e-05
TC204868 similar to UP|Q9LKY8 (Q9LKY8) Proline-rich protein, par... 41 1e-04
TC209498 similar to UP|Q8L8Z3 (Q8L8Z3) Structural protein-like p... 40 1e-04
TC232630 similar to UP|CDI8_ARATH (P42735) Cadmium induced prote... 40 2e-04
TC208769 similar to PIR|C85356|C85356 glycine-rich protein [impo... 40 2e-04
AW509130 39 4e-04
TC205428 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 pr... 39 4e-04
TC232194 weakly similar to UP|Q9LSN6 (Q9LSN6) Arabidopsis thalia... 39 6e-04
TC203684 weakly similar to UP|Q7Q8B1 (Q7Q8B1) EbiP5126 (Fragment... 38 0.001
TC210023 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ... 37 0.001
BE211650 37 0.001
TC212513 similar to UP|Q72ST4 (Q72ST4) Cytoplasmic membrane prot... 35 0.005
>TC218072 weakly similar to UP|APG_BRANA (P40603) Anter-specific proline-rich
protein APG (Protein CEX) (Fragment), partial (10%)
Length = 708
Score = 145 bits (367), Expect = 2e-36
Identities = 65/78 (83%), Positives = 71/78 (90%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEF 73
GFGVGCGFG+GWGFGGMPLNLLGLG GGGCGVGVGLGWGFG+AFGSKYRSS++ FQGV+F
Sbjct: 66 GFGVGCGFGIGWGFGGMPLNLLGLGAGGGCGVGVGLGWGFGTAFGSKYRSSRVTFQGVDF 245
Query: 74 DSKEKGDSPPLSKPTPEV 91
DSKEK +S LSKP EV
Sbjct: 246 DSKEKVNSTELSKPRTEV 299
>TC218071 similar to UP|Q01979 (Q01979) Proline-rich protein, partial (6%)
Length = 791
Score = 144 bits (363), Expect = 7e-36
Identities = 63/78 (80%), Positives = 71/78 (90%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQGVEF 73
GFG+GCGFG+GWGFGGMPLNLLGLG GGGCGVGVGLGWGFG+AFGSKYRSS++ FQGV+F
Sbjct: 86 GFGIGCGFGIGWGFGGMPLNLLGLGAGGGCGVGVGLGWGFGAAFGSKYRSSRVTFQGVDF 265
Query: 74 DSKEKGDSPPLSKPTPEV 91
D KEK +S LSKP+ EV
Sbjct: 266 DRKEKVNSTELSKPSTEV 319
>TC220190 weakly similar to UP|Q84630 (Q84630) A316R protein, partial (11%)
Length = 602
Score = 54.3 bits (129), Expect = 1e-08
Identities = 27/62 (43%), Positives = 38/62 (60%), Gaps = 8/62 (12%)
Frame = +2
Query: 14 GFGVGCGFGVG------WGFGGMPLNLLGL--GVGGGCGVGVGLGWGFGSAFGSKYRSSQ 65
G G+GCG G+G +G+GG P N + L G+G GCGVGVG G+G G + +R+ +
Sbjct: 203 GAGIGCGAGIGLGLVGGFGYGGWPFNHMHLVFGLGMGCGVGVGFGFGQGIGYDFNFRTRK 382
Query: 66 IR 67
R
Sbjct: 383 SR 388
Score = 29.6 bits (65), Expect = 0.26
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 36 GLGVGGGCGVGVGLGWGFGSAFG 58
G G G GCG G+GLG G +G
Sbjct: 197 GFGAGIGCGAGIGLGLVGGFGYG 265
>TC229217 weakly similar to UP|Q9FM99 (Q9FM99) Similarity to carbonic
anhydrase, partial (10%)
Length = 609
Score = 47.4 bits (111), Expect = 1e-06
Identities = 22/49 (44%), Positives = 29/49 (58%), Gaps = 9/49 (18%)
Frame = +1
Query: 15 FGVGCGFGVGWGFG---------GMPLNLLGLGVGGGCGVGVGLGWGFG 54
FG+G G G+G+G G G+P +G G G GCGVG+G G+G G
Sbjct: 148 FGIGAGCGLGFGLGLLGGVGVGPGIPGFQVGFGFGAGCGVGLGFGYGVG 294
Score = 30.4 bits (67), Expect = 0.15
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 14 GFGVGCGFGVGWGFG 28
GFG GCG G+G+G+G
Sbjct: 244 GFGAGCGVGLGFGYG 288
Score = 28.5 bits (62), Expect = 0.57
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = +1
Query: 38 GVGGGCGVGVGLGWGFGSAFGSKYRSSQIRF 68
G+G GCG+G GLG G G Q+ F
Sbjct: 151 GIGAGCGLGFGLGLLGGVGVGPGIPGFQVGF 243
Score = 28.1 bits (61), Expect = 0.75
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 11 FLSGFGVGCGFGVGWGFG 28
F GFG G G GVG GFG
Sbjct: 229 FQVGFGFGAGCGVGLGFG 282
>TC230423 similar to UP|Q41187 (Q41187) Glycine-rich protein (Fragment),
partial (40%)
Length = 522
Score = 45.4 bits (106), Expect = 5e-06
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G G+G G G G GFGG +G G+GGG G G G G GFG G
Sbjct: 17 GGGIGGGGGAGGGFGGGHGGGVGGGIGGGAGGGGGAGGGFGGGAG 151
Score = 44.3 bits (103), Expect = 1e-05
Identities = 23/44 (52%), Positives = 24/44 (54%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAF 57
GFG G G G G GFGG G G GGG G G G G+G G F
Sbjct: 131 GFGGGAGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGGGF 262
Score = 40.4 bits (93), Expect = 1e-04
Identities = 22/46 (47%), Positives = 25/46 (53%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGS 59
G G G G G G GFGG G G GGG G G G G+G G+ G+
Sbjct: 95 GGGAGGGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGGFGGGAGGGA 232
Score = 37.0 bits (84), Expect = 0.002
Identities = 23/48 (47%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLG--VGGGCGVGVGLGWGFGSAFGS 59
GFG G G GVG G GG G G GGG G G G G+G G+ G+
Sbjct: 53 GFGGGHGGGVGGGIGGGAGGGGGAGGGFGGGAGGGAGGGFGGGAGGGA 196
Score = 36.6 bits (83), Expect = 0.002
Identities = 22/45 (48%), Positives = 23/45 (50%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G GVG G G G G GG G G GGG G G G G G G+ G
Sbjct: 71 GGGVGGGIGGGAGGGGGAGGGFGGGAGGGAGGGFGGGAGGGAGGG 205
Score = 30.4 bits (67), Expect = 0.15
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2
Query: 36 GLGVGGGCGVGVGLGWGFGSAFG 58
G GVGGG G G G G GFG G
Sbjct: 5 GGGVGGGIGGGGGAGGGFGGGHG 73
>TC214511 weakly similar to PIR|C85356|C85356 glycine-rich protein [imported]
- Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(88%)
Length = 1085
Score = 43.5 bits (101), Expect = 2e-05
Identities = 29/72 (40%), Positives = 30/72 (41%)
Frame = +2
Query: 10 LFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRFQ 69
L L G GVG G G LGLG+GGG G G G G G GS GS SS
Sbjct: 464 LDLGGLGVGLGLG------------LGLGIGGGSGSGAGAGAGSGSGSGSGSSSSSASSS 607
Query: 70 GVEFDSKEKGDS 81
S G S
Sbjct: 608 ASSSSSSGSGGS 643
Score = 34.3 bits (77), Expect = 0.010
Identities = 21/46 (45%), Positives = 23/46 (49%)
Frame = +2
Query: 13 SGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
SG G G G G G GG G G GGG G G G G+G G +G
Sbjct: 689 SGSGRSQGRGGGGGGGG------GGGGGGGSGYGHGEGYGHGEGYG 808
Score = 31.2 bits (69), Expect = 0.089
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 29 GMPLNLLGLGVGGGCGVGVGLGWGFGSAFGS 59
G+ L LG+G+G G G+G+G G G G+ G+
Sbjct: 461 GLDLGGLGVGLGLGLGLGIGGGSGSGAGAGA 553
>TC204867 similar to UP|Q9LKY8 (Q9LKY8) Proline-rich protein, partial (88%)
Length = 931
Score = 42.0 bits (97), Expect = 5e-05
Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
Frame = -1
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVG--------GGCGVGVGLGWGFGSAFG 58
GFGVG GVG+G GG+ L + G+G G GG G+GVG G GFG G
Sbjct: 265 GFGVG---GVGFGVGGVGLGVGGVGFGVGGVGFGVGGVGIGVG-GVGFGDGVG 119
Score = 35.8 bits (81), Expect = 0.004
Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 2 SLSHSGFCLFLSGFGVGCGFGVGWGFGGMPLNLLGLGVG-GGCGVGVGLGWGFG 54
SL H LF G G G +G+G GG+ + G+G+G GG G GVG G GFG
Sbjct: 325 SLGHEA--LFDGGEGGEGGGQLGFGVGGVGFGVGGVGLGVGGVGFGVG-GVGFG 173
Score = 34.3 bits (77), Expect = 0.010
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -1
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVG 46
GFGVG GVG+G GG+ + + G+G G G G G
Sbjct: 202 GFGVG---GVGFGVGGVGIGVGGVGFGDGVGGG 113
>TC214236 similar to UP|Q9M6T6 (Q9M6T6) Proline-rich protein (Extensin-like
protein), partial (7%)
Length = 442
Score = 41.6 bits (96), Expect = 7e-05
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Frame = -1
Query: 7 GFCLFL---SGFGVGCGFGVGWGFG---GMPLNLLGLGVGGGCGVGVGLG------WGFG 54
G CL + +G G+G G G+G G G+ L GVG G G+ G+G WG
Sbjct: 364 GICLGMGLNTGIGIGLTMGTGFGIGFVTGLGRGFLTTGVGFGMGLDTGIGGLTMGLWGGE 185
Query: 55 SAFGSKYRSSQIRFQGVEFDSKEKGDSPPLSKPT 88
S GS + + S K DS PL KP+
Sbjct: 184 SKTGS*GG*EEELTRTGLVGSGSKSDSSPLKKPS 83
Score = 34.7 bits (78), Expect = 0.008
Identities = 17/45 (37%), Positives = 25/45 (54%), Gaps = 1/45 (2%)
Frame = -1
Query: 14 GFGVGCGFGVGWGFGGMPLNL-LGLGVGGGCGVGVGLGWGFGSAF 57
G +G G G G G + + LG+G+ G G+G+ +G GFG F
Sbjct: 421 GIDLGIGLVTGKGRGFFTIGICLGMGLNTGIGIGLTMGTGFGIGF 287
Score = 29.6 bits (65), Expect = 0.26
Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 11/56 (19%)
Frame = -1
Query: 13 SGFGVGCGFGVGWGFG----------GMPLNL-LGLGVGGGCGVGVGLGWGFGSAF 57
+G G+ G G+ G G GM LN +G+G+ G G G+G G G F
Sbjct: 430 TGIGIDLGIGLVTGKGRGFFTIGICLGMGLNTGIGIGLTMGTGFGIGFVTGLGRGF 263
>BE057136 similar to PIR|JQ1060|JQ10 glycine-rich protein 1 - Arabidopsis
thaliana (fragment), partial (19%)
Length = 420
Score = 41.2 bits (95), Expect = 9e-05
Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 12 LSGFGVG-CGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
+ GFG G G G G GFGG G G+GGG G G G G GFG G
Sbjct: 145 VDGFGGGGLGGGAGGGFGGGA----GAGIGGGGGAGGGAGGGFGGGKG 14
>TC204868 similar to UP|Q9LKY8 (Q9LKY8) Proline-rich protein, partial (91%)
Length = 865
Score = 40.8 bits (94), Expect = 1e-04
Identities = 30/71 (42%), Positives = 37/71 (51%), Gaps = 3/71 (4%)
Frame = -2
Query: 10 LFLSGFGVGCGFGVGWGFGGMPLNLLGLGVG-GGCGVGVG--LGWGFGSAFGSKYRSSQI 66
L + G GVG G GVG+G GG+ + G+G G GG G GVG G GFG G Q+
Sbjct: 294 LGVGGVGVGVG-GVGFGVGGVGFGVGGVGFGVGGVGFGVGGVGGVGFGDGDGVGVGGGQL 118
Query: 67 RFQGVEFDSKE 77
VE +E
Sbjct: 117 A*VNVE*KRRE 85
Score = 37.7 bits (86), Expect = 0.001
Identities = 27/45 (60%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Frame = -2
Query: 14 GFGVGCGFGVGWG--FGGMP-LNLLGLGVG-GGCGVGVGLGWGFG 54
GFGVG GVG+G GG P L + G+GVG GG G GVG G GFG
Sbjct: 357 GFGVGGVGGVGFGGEGGGQPALGVGGVGVGVGGVGFGVG-GVGFG 226
Score = 31.2 bits (69), Expect = 0.089
Identities = 22/43 (51%), Positives = 23/43 (53%)
Frame = -2
Query: 16 GVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
GVG G GVG G GG +G GVGG GVG G G A G
Sbjct: 399 GVG-GVGVGVGVGG-----VGFGVGGVGGVGFGGEGGGQPALG 289
Score = 30.8 bits (68), Expect = 0.12
Identities = 21/44 (47%), Positives = 22/44 (49%)
Frame = -2
Query: 15 FGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
F V G G GG LGVGG GVGVG+G G G FG
Sbjct: 477 FNVSLGHEALGGEGGEGGGQPALGVGGVGGVGVGVGVG-GVGFG 349
Score = 28.9 bits (63), Expect = 0.44
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -2
Query: 7 GFCLFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGG 42
GF + GFGVG GVG+G G G+GVGGG
Sbjct: 213 GFGVGGVGFGVGGVGGVGFGDGD------GVGVGGG 124
>TC209498 similar to UP|Q8L8Z3 (Q8L8Z3) Structural protein-like protein,
partial (51%)
Length = 795
Score = 40.4 bits (93), Expect = 1e-04
Identities = 21/47 (44%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNLL-GLGVGGGCGVGVGLGWGFGSAFGS 59
G G G G+G G G G P G G G G G G G G+G+GS G+
Sbjct: 305 GSGPGTGYGYGSGSGRSPTGFARGYGYGFGSGTGSGSGYGYGSGGGA 445
Score = 32.3 bits (72), Expect = 0.040
Identities = 21/52 (40%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = +2
Query: 11 FLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGV-GVGLGWGFGSAFGSKY 61
F G+G G G G G G G G G GGG G G G G G++ G Y
Sbjct: 365 FARGYGYGFGSGTGSGSG------YGYGSGGGAHAGGYGSGSGSGNSGGGGY 502
Score = 30.8 bits (68), Expect = 0.12
Identities = 20/47 (42%), Positives = 23/47 (48%)
Frame = +2
Query: 13 SGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGS 59
+GF G G+G G G G G G G G G G G G+GS GS
Sbjct: 359 TGFARGYGYGFGSGTGS------GSGYGYGSGGGAHAG-GYGSGSGS 478
Score = 25.4 bits (54), Expect = 4.9
Identities = 15/41 (36%), Positives = 17/41 (40%), Gaps = 6/41 (14%)
Frame = +2
Query: 24 GWGFGGMPLNLLGLGVGG------GCGVGVGLGWGFGSAFG 58
G G P G G G G G G G G+G+GS G
Sbjct: 227 GAPLAGTPTGATGSGHGANWDYSWGWGSGPGTGYGYGSGSG 349
>TC232630 similar to UP|CDI8_ARATH (P42735) Cadmium induced protein AS8,
partial (49%)
Length = 699
Score = 40.0 bits (92), Expect = 2e-04
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGF 53
G GVG G GVGWG G P ++G VG GCG+G +G F
Sbjct: 165 GMGVGVGCGVGWGPGFGP-EVIGY-VGAGCGIGFNVGITF 278
Score = 38.5 bits (88), Expect = 6e-04
Identities = 21/47 (44%), Positives = 26/47 (54%), Gaps = 3/47 (6%)
Frame = +3
Query: 14 GFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGV---GLGWGFGSAF 57
G GVGCG G G GFG + +G G G G VG+ G+G G + F
Sbjct: 171 GVGVGCGVGWGPGFGPEVIGYVGAGCGIGFNVGITFAGVGVGLPANF 311
Score = 26.9 bits (58), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 38 GVGGGCGVGVGLGWGFGSAFG 58
G G GVGVG G G+G FG
Sbjct: 153 GAFWGMGVGVGCGVGWGPGFG 215
>TC208769 similar to PIR|C85356|C85356 glycine-rich protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(53%)
Length = 679
Score = 39.7 bits (91), Expect = 2e-04
Identities = 25/55 (45%), Positives = 27/55 (48%)
Frame = +1
Query: 10 LFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSS 64
L L G G+G G GVG LG+GGG G G G G G GS GS SS
Sbjct: 64 LDLGGVGIGVGAGVG------------LGLGGGGGAGSGAGAGSGSGSGSSSYSS 192
Score = 33.9 bits (76), Expect = 0.014
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 29 GMPLNLLGLGVGGGCGVGVGLGWGFGSAFGS 59
G+ L +G+GVG G G+G+G G G GS G+
Sbjct: 61 GLDLGGVGIGVGAGVGLGLGGGGGAGSGAGA 153
>AW509130
Length = 424
Score = 38.9 bits (89), Expect = 4e-04
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = -2
Query: 7 GFCLFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGS 59
GF GFG+G G+G GFG N +G G+G G G+G+G G+ G+
Sbjct: 396 GFFTVGIGFGIGLKNGIGNGFGIGLNNGIGNGLGIGLNTGIGIGLIIGTGTGT 238
Score = 37.0 bits (84), Expect = 0.002
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Frame = -2
Query: 7 GFCLFLSGFGVGCGFGVGWGFG-GMPLN---LLGLG-----VGGGCGVGVGLGWGFGSAF 57
GF ++G G+G G+G GF G+ + G+G +G G G+G+ +G GFG F
Sbjct: 213 GFFTIVNGLGIGLNTGIGTGFTVGVDFGTGLITGIGSGFFTIGDGFGIGLTIGIGFGIGF 34
Score = 33.5 bits (75), Expect = 0.018
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 6 SGFCLFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGC 43
SGF GFG+G G+G+G G + + G+G+G C
Sbjct: 105 SGFFTIGDGFGIGLTIGIGFGIGFL---ITGVGIGFSC 1
Score = 29.3 bits (64), Expect = 0.34
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Frame = -2
Query: 13 SGFGVGCGFGVGWGFGGMPLNL---LGLGVGGGCGVGVGLGWGFGSAFGSKY 61
+G G G G+G GF + L L G+G G VGV G G + GS +
Sbjct: 252 TGTGTGLITGIGRGFFTIVNGLGIGLNTGIGTGFTVGVDFGTGLITGIGSGF 97
>TC205428 weakly similar to UP|Q8L685 (Q8L685) Pherophorin-dz1 protein
precursor, partial (5%)
Length = 720
Score = 38.9 bits (89), Expect = 4e-04
Identities = 24/52 (46%), Positives = 26/52 (49%), Gaps = 9/52 (17%)
Frame = +1
Query: 13 SGFGVGCGFGVGWGFGGM---------PLNLLGLGVGGGCGVGVGLGWGFGS 55
+G G+G GFG G G GG G GVGGG G GVG G G GS
Sbjct: 232 AGAGIGGGFGGGGGLGGGLGGPTGGIGGFGGTGSGVGGGIGGGVGTGVGGGS 387
Score = 38.5 bits (88), Expect = 6e-04
Identities = 22/48 (45%), Positives = 26/48 (53%)
Frame = +1
Query: 11 FLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
F+S GVG G+G G+P G G+GGG G G GLG G G G
Sbjct: 166 FISYGGVGGYSGIG--NNGLPFGGAGAGIGGGFGGGGGLGGGLGGPTG 303
Score = 33.1 bits (74), Expect = 0.023
Identities = 19/34 (55%), Positives = 21/34 (60%)
Frame = +1
Query: 12 LSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGV 45
+ GFG G G GVG G GG +G GVGGG GV
Sbjct: 307 IGGFG-GTGSGVGGGIGGG----VGTGVGGGSGV 393
>TC232194 weakly similar to UP|Q9LSN6 (Q9LSN6) Arabidopsis thaliana genomic
DNA, chromosome 3, TAC clone:K14A17, partial (40%)
Length = 550
Score = 38.5 bits (88), Expect = 6e-04
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = +2
Query: 14 GFGVGCGFGVGWGFGGMPLNL------LGLGVGGGCGVGVGLGWGFGSAFG 58
GFG G G G+G G GG + + G+ GGG G GVG+G G GS G
Sbjct: 257 GFGGGGGSGIGKGGGGSGVGIGSGSGSGGVQGGGGQGRGVGIGSGVGSGTG 409
Score = 26.9 bits (58), Expect = 1.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +2
Query: 35 LGLGVGGGCGVGV---GLGWGFGSAFGS 59
+G G GGG G+G G G G GS GS
Sbjct: 254 IGFGGGGGSGIGKGGGGSGVGIGSGSGS 337
>TC203684 weakly similar to UP|Q7Q8B1 (Q7Q8B1) EbiP5126 (Fragment), partial
(49%)
Length = 1062
Score = 37.7 bits (86), Expect = 0.001
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = -3
Query: 14 GFGVGCGFGVGWGFGGMPLNL-----LGLGVGGGCGVGVGLGWGF 53
G G G G +G GFG PLN +GL + G G+G+ +G GF
Sbjct: 526 GIGFGIGLTMGIGFGKTPLNFSSSLGIGLTIRNGFGIGLTMGIGF 392
Score = 34.3 bits (77), Expect = 0.010
Identities = 19/49 (38%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Frame = -3
Query: 11 FLSGFGVGCGFGVGWGFG-GMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
F G +G GF +G FG G+ +G+G+G G+G G+G G FG
Sbjct: 619 FSIGLIIGIGFTMGTDFGIGL---YIGIGIGLTMGIGFGIGLTMGIGFG 482
Score = 33.9 bits (76), Expect = 0.014
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 16/59 (27%)
Frame = -3
Query: 12 LSGFGVGCGFGVGWGFG-----GMPLNLL-----------GLGVGGGCGVGVGLGWGFG 54
L+GFG+G G+ +G G G + L+ G+G+ G G+G+ +G GFG
Sbjct: 688 LNGFGIGLTMGISFGIGLTMGFGFSIGLIIGIGFTMGTDFGIGLYIGIGIGLTMGIGFG 512
Score = 32.7 bits (73), Expect = 0.030
Identities = 17/59 (28%), Positives = 32/59 (53%), Gaps = 3/59 (5%)
Frame = -3
Query: 13 SGFGVGCGFGVGWGFG---GMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSSQIRF 68
+GFG+G G+G+ G G+ + L +G+ G G+ +G+G+ G G + + + F
Sbjct: 430 NGFGIGLTMGIGFDIGL*TGIGIGLT-IGIDFGIGLIMGMGFEIGLIIGIGFGKNPLNF 257
Score = 28.9 bits (63), Expect = 0.44
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Frame = -3
Query: 7 GFCLFLSGFGVGCGFGV-GWGFGG----------MPLNLLGLGVGGGCGVGVGLGWGFGS 55
GF S +G GF G+GF LN G+G+ G G+GL GFG
Sbjct: 796 GFLNLGSSGSLGIGFSKKGFGFKNSSDPKAGIDFFTLNGFGIGLTMGISFGIGLTMGFGF 617
Query: 56 AFG 58
+ G
Sbjct: 616 SIG 608
>TC210023 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
(Corresponding sequence ZK643.8), partial (12%)
Length = 819
Score = 37.4 bits (85), Expect = 0.001
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = +3
Query: 10 LFLSGFGVGCGFGVGWGFGGMPLNLLGLGVGGGCGVGVGLGWGFGSAFGSKYRSS 64
L SG GCG G G G GG ++L G GGCG G G G G G++ SS
Sbjct: 288 LIKSGGCGGCGAGCGGGCGGGCGSMLKSGGCGGCGGGCG---GCGGGCGNRLESS 443
>BE211650
Length = 461
Score = 37.4 bits (85), Expect = 0.001
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Frame = -1
Query: 16 GVGCGFGVGWGFG-------GMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G+G GF +G GFG G L +G GVG G G+G+ G G G
Sbjct: 305 GIGIGFTIGIGFGMVLITGIGRGLFTIGNGVGTGLNTGIGIDLGIGLVTG 156
Score = 30.4 bits (67), Expect = 0.15
Identities = 20/65 (30%), Positives = 28/65 (42%), Gaps = 17/65 (26%)
Frame = -1
Query: 7 GFCLFLSGFGVGCGFGVGWGFG---GMPLNLL--------------GLGVGGGCGVGVGL 49
GF + +GFG G G+G G G+ L+ G G+ G G+G +
Sbjct: 461 GFLVNANGFGKGLNVGIGIGLTIGTGLVTGLIAGIGKGFF*NGRGFGTGLNTGIGIGFTI 282
Query: 50 GWGFG 54
G GFG
Sbjct: 281 GIGFG 267
Score = 24.6 bits (52), Expect = 8.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 29 GMPLNLLGLGVGGGCGVGVGLGWGFGSAFG 58
G +N G G G G+G+GL G G G
Sbjct: 461 GFLVNANGFGKGLNVGIGIGLTIGTGLVTG 372
>TC212513 similar to UP|Q72ST4 (Q72ST4) Cytoplasmic membrane protein, partial
(6%)
Length = 733
Score = 35.4 bits (80), Expect = 0.005
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 33/77 (42%)
Frame = +1
Query: 13 SGFGVGCGFGVGWG----FGGMPL------------------------NLLGLG-----V 39
+GFG+GCG G+G G G +P+ +L LG V
Sbjct: 100 TGFGIGCGVGIGVGRPLNLGAIPMLNQVMSATRGATDAFSGVIRHVNTSLRKLGAKNIEV 279
Query: 40 GGGCGVGVGLGWGFGSA 56
G GCGVG G G+G G A
Sbjct: 280 GIGCGVGFGHGFGVGLA 330
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.320 0.147 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,455,133
Number of Sequences: 63676
Number of extensions: 93381
Number of successful extensions: 2117
Number of sequences better than 10.0: 242
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1578
length of query: 95
length of database: 12,639,632
effective HSP length: 71
effective length of query: 24
effective length of database: 8,118,636
effective search space: 194847264
effective search space used: 194847264
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0050.15