BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0050.14
(77 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 ... 106 2e-24
TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 74 1e-14
TC215552 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit ... 74 1e-14
TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit ... 74 1e-14
TC215551 homologue to UP|PRS7_SPIOL (Q41365) 26S protease regula... 74 1e-14
TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regula... 73 2e-14
TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 h... 73 3e-14
TC228291 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulato... 67 1e-12
TC227996 homologue to UP|PRSA_BRACM (O23894) 26S protease regula... 67 1e-12
TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regula... 67 2e-12
TC206435 homologue to UP|PRSA_LYCES (P54776) 26S protease regula... 63 3e-11
AW349532 homologue to SP|P54774|CC48 Cell division cycle protein... 62 5e-11
AI442328 homologue to PIR|T46169|T461 CDC48-like protein - Arabi... 62 5e-11
TC204913 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, ... 57 2e-09
BI893296 similar to GP|21553404|gb 26S proteasome regulatory par... 56 4e-09
TC230208 similar to UP|Q6YUV9 (Q6YUV9) Transitional endoplasmic ... 56 4e-09
TC204915 weakly similar to GB|AAH46286.1|28279482|BC046286 spast... 56 4e-09
TC229555 similar to GB|AAM62497.1|21553404|AY085265 26S proteaso... 55 5e-09
TC205253 homologue to UP|O99018 (O99018) Chloroplast protease pr... 55 7e-09
TC206370 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, part... 55 9e-09
>TC225592 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;} , partial (94%)
Length = 1612
Score = 106 bits (264), Expect = 2e-24
Identities = 51/56 (91%), Positives = 53/56 (94%)
Frame = +3
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I +VIE+PIKHPELFES GIAQPKGVLLYGPPGT KTLLARAVAHHTDCTFIRVSG
Sbjct: 615 IKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 782
>TC225683 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (97%)
Length = 1513
Score = 74.3 bits (181), Expect = 1e-14
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = +2
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I + +E+P+ HPEL+E GI PKGV+LYG PGT KTLLA+AVA+ T TF+RV G
Sbjct: 608 IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 775
>TC215552 UP|PRS7_ARATH (Q9SSB5) 26S protease regulatory subunit 7 (26S
proteasome subunit 7) (26S proteasome AAA-ATPase subunit
RPT1a) (Regulatory particle triple-A ATPase subunit 1a),
partial (73%)
Length = 1082
Score = 74.3 bits (181), Expect = 1e-14
Identities = 36/54 (66%), Positives = 41/54 (75%)
Frame = +1
Query: 10 QVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+V+E+P+ HPE F GI PKGVL YGPPGT KTLLARAVA+ TD FIRV G
Sbjct: 193 EVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 354
>TC225681 homologue to UP|Q9SZD4 (Q9SZD4) 26S proteasome subunit 4-like
protein (26S proteasome subunit AtRPT2a), partial (93%)
Length = 1433
Score = 74.3 bits (181), Expect = 1e-14
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = +1
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
I + +E+P+ HPEL+E GI PKGV+LYG PGT KTLLA+AVA+ T TF+RV G
Sbjct: 505 IKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVG 672
>TC215551 homologue to UP|PRS7_SPIOL (Q41365) 26S protease regulatory subunit
7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase
subunit RPT1) (Regulatory particle triple-A ATPase
subunit 1), complete
Length = 1561
Score = 74.3 bits (181), Expect = 1e-14
Identities = 36/54 (66%), Positives = 41/54 (75%)
Frame = +3
Query: 10 QVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+V+E+P+ HPE F GI PKGVL YGPPGT KTLLARAVA+ TD FIRV G
Sbjct: 600 EVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIG 761
>TC205434 homologue to UP|PRS6_ARATH (Q9SEI4) 26S protease regulatory subunit
6B homolog (26S proteasome AAA-ATPase subunit RPT3)
(Regulatory particle triple-A ATPase subunit 3), partial
(96%)
Length = 1573
Score = 73.2 bits (178), Expect = 2e-14
Identities = 33/59 (55%), Positives = 44/59 (73%)
Frame = +1
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSGKVY 66
I + +E+P+ H EL++ GI P+GVLLYGPPGT KT+LA+AVA+HT FIRV G +
Sbjct: 613 IREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 789
>TC206116 UP|CC48_SOYBN (P54774) Cell division cycle protein 48 homolog
(Valosin containing protein homolog) (VCP), complete
Length = 2583
Score = 72.8 bits (177), Expect = 3e-14
Identities = 30/59 (50%), Positives = 47/59 (78%)
Frame = +1
Query: 5 LSYILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
++ I +++E+P++HP+LF+S G+ PKG+LLYGPPG+ KTL+ARAVA+ T F ++G
Sbjct: 670 MAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING 846
Score = 62.8 bits (151), Expect = 3e-11
Identities = 27/54 (50%), Positives = 37/54 (68%)
Frame = +1
Query: 10 QVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+ ++ P++HPE FE G++ KGVL YGPPG KTLLA+A+A+ FI V G
Sbjct: 1504 ETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 1665
>TC228291 homologue to UP|Q9FXT8 (Q9FXT8) 26S proteasome regulatory
particle triple-A ATPase subunit4, partial (62%)
Length = 1079
Score = 67.4 bits (163), Expect = 1e-12
Identities = 34/67 (50%), Positives = 44/67 (64%), Gaps = 1/67 (1%)
Frame = +3
Query: 12 IEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIR-VSGKVYSLYS 70
IE+P+ +PELF GI PKGVLLYGPPGT KTLLARA+A + + F++ VS + Y
Sbjct: 24 IELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYI 203
Query: 71 ASSTHYL 77
S +
Sbjct: 204GESARLI 224
>TC227996 homologue to UP|PRSA_BRACM (O23894) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1),
partial (54%)
Length = 1240
Score = 67.4 bits (163), Expect = 1e-12
Identities = 30/55 (54%), Positives = 41/55 (74%)
Frame = +2
Query: 9 LQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
++ I +PI H E F+ G+ PKGVLLYGPPGT KTL+ARA A T+ TF++++G
Sbjct: 56 VETIVLPITHKERFQKFGVGPPKGVLLYGPPGTGKTLIARACAAQTNATFLKLAG 220
>TC214213 homologue to UP|PRSA_BRACM (O23894) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1),
partial (64%)
Length = 1086
Score = 67.0 bits (162), Expect = 2e-12
Identities = 29/56 (51%), Positives = 42/56 (74%)
Frame = +1
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+++ I +P+ H E F+ G+ PKGVLLYGPPGT KTL+ARA A T+ TF++++G
Sbjct: 85 LVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAG 252
>TC206435 homologue to UP|PRSA_LYCES (P54776) 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1)
(Mg(2+)-dependent ATPase 1) (LEMA-1), partial (61%)
Length = 838
Score = 62.8 bits (151), Expect = 3e-11
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +2
Query: 8 ILQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+++ I +P+ E F+ G+ PKGVLLYGPPGT KTL+ARA A T+ TF++++G
Sbjct: 605 LVEAIVLPMTCKERFQKLGVRPPKGVLLYGPPGTGKTLIARACAAQTNATFLKLAG 772
>AW349532 homologue to SP|P54774|CC48 Cell division cycle protein 48 homolog
(Valosin containing protein homolog) (VCP). [Soybean],
partial (14%)
Length = 502
Score = 62.0 bits (149), Expect = 5e-11
Identities = 28/51 (54%), Positives = 35/51 (67%)
Frame = -2
Query: 13 EVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
E P++HPE FE G++ KGVL YGPPG KTLLA+A+A+ FI V G
Sbjct: 489 EYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 337
>AI442328 homologue to PIR|T46169|T461 CDC48-like protein - Arabidopsis
thaliana, partial (12%)
Length = 418
Score = 62.0 bits (149), Expect = 5e-11
Identities = 28/51 (54%), Positives = 35/51 (67%)
Frame = +2
Query: 13 EVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
E P++HPE FE G++ KGVL YGPPG KTLLA+A+A+ FI V G
Sbjct: 5 EYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG 157
>TC204913 weakly similar to UP|SAP1_YEAST (P39955) SAP1 protein, partial
(14%)
Length = 1080
Score = 56.6 bits (135), Expect = 2e-09
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +3
Query: 10 QVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVS 62
+++ +P++ PELF +A+P KG+LL+GPPGT KT+LA+AVA FI +S
Sbjct: 351 ELVMLPLQRPELFGKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 512
>BI893296 similar to GP|21553404|gb 26S proteasome regulatory particle
chain RPT6-like protein {Arabidopsis thaliana}, partial
(32%)
Length = 398
Score = 55.8 bits (133), Expect = 4e-09
Identities = 26/55 (47%), Positives = 38/55 (68%), Gaps = 1/55 (1%)
Frame = +1
Query: 8 ILQVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRV 61
+ +++ +P+K P+LF + P KGVLLYGPPGT KT+LA+A+A + FI V
Sbjct: 22 LFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINV 186
>TC230208 similar to UP|Q6YUV9 (Q6YUV9) Transitional endoplasmic reticulum
ATPase-like, partial (45%)
Length = 642
Score = 55.8 bits (133), Expect = 4e-09
Identities = 25/55 (45%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +1
Query: 10 QVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSG 63
+++ +P++ PELF + +P KG+LL+GPPGT KTLLA+A+A FI ++G
Sbjct: 361 ELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITG 525
>TC204915 weakly similar to GB|AAH46286.1|28279482|BC046286 spastic
paraplegia 4 homolog {Mus musculus;} , partial (21%)
Length = 1470
Score = 55.8 bits (133), Expect = 4e-09
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +1
Query: 10 QVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRVS 62
+++ +P++ PELF +A+P KG+LL+GPPGT KT+LA+AVA FI +S
Sbjct: 322 ELVMLPLQRPELFCKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 483
>TC229555 similar to GB|AAM62497.1|21553404|AY085265 26S proteasome
regulatory particle chain RPT6-like protein {Arabidopsis
thaliana;} , partial (85%)
Length = 1155
Score = 55.5 bits (132), Expect = 5e-09
Identities = 26/55 (47%), Positives = 38/55 (68%), Gaps = 1/55 (1%)
Frame = +2
Query: 8 ILQVIEVPIKHPELFESPGIAQP-KGVLLYGPPGTRKTLLARAVAHHTDCTFIRV 61
+ +++ +P+K P+LF + P KGVLLYGPPGT KT+LA+A+A + FI V
Sbjct: 278 LFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESRAVFINV 442
>TC205253 homologue to UP|O99018 (O99018) Chloroplast protease precursor,
partial (69%)
Length = 1678
Score = 55.1 bits (131), Expect = 7e-09
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = +2
Query: 9 LQVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVSGKVY 66
++V+E +K PE F + G PKGVLL GPPGT KTLLA+A+A F +SG +
Sbjct: 98 MEVVEF-LKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 268
>TC206370 similar to UP|Q940D1 (Q940D1) At1g64110/F22C12_22, partial (38%)
Length = 1502
Score = 54.7 bits (130), Expect = 9e-09
Identities = 22/53 (41%), Positives = 39/53 (73%)
Frame = +2
Query: 10 QVIEVPIKHPELFESPGIAQPKGVLLYGPPGTRKTLLARAVAHHTDCTFIRVS 62
+++ +P++ P+LF+ + +G+LL+GPPGT KT+LA+A+A+ +FI VS
Sbjct: 104 ELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVS 262
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,782,490
Number of Sequences: 63676
Number of extensions: 40407
Number of successful extensions: 204
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of query: 77
length of database: 12,639,632
effective HSP length: 53
effective length of query: 24
effective length of database: 9,264,804
effective search space: 222355296
effective search space used: 222355296
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0050.14