BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.9
(1366 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 176 5e-44
CO982349 145 1e-34
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 90 2e-27
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 105 1e-22
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 66 8e-21
TC231922 99 1e-20
AW757033 83 9e-16
CA851030 80 5e-15
BI972659 80 5e-15
CF922212 80 8e-15
BG404993 79 2e-14
TC213164 79 2e-14
CA851073 78 3e-14
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 74 6e-13
BM891637 72 1e-12
BQ453949 72 2e-12
CF921567 69 2e-11
BM891241 58 3e-11
CO986021 67 5e-11
TC233392 66 9e-11
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase
(Fragment) , partial (59%)
Length = 1077
Score = 176 bits (447), Expect = 5e-44
Identities = 97/305 (31%), Positives = 156/305 (50%)
Frame = +1
Query: 562 NALIAFECFHYMKKRISGRSGMMALKLDMSKAYDRVEWPFLRSVLTHMGFPVHWVNLVMN 621
+ALIA E K+ + K+D KAYD V W FL ++ M F W+ +
Sbjct: 7 SALIANEVIDEAKR---SNKSCLVFKVDYEKAYDSVSWNFLMYMMWRMDFSPKWIKWIEE 177
Query: 622 CVTTVNFAVMLNGNPQPTFAPHRGLRQGDPLSPYLFILCGEAFSALIQKSISTSALHGIK 681
CV + + +V++NG+P F P RGLRQGDPL+P+LF + E + L+++++ +
Sbjct: 178 CVKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRRAVEENLYKPYL 357
Query: 682 ISRSAPVISHLLFADDSVLFARATVQEAECIKNILATYERASGQKINLEKSMLSVSRNVP 741
+ + IS L +ADD++ F A + E IK IL ++E S +IN KS V V
Sbjct: 358 VGANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFAKSCFGVF-GVT 534
Query: 742 ENCFVDLQLLLGVKAVDSYDKYLGLPTIIGKSKTQIFRFVKERVWKKLKGWKEQTLSRAG 801
+ + L + YLG+P + ++ + + +KL WK + +S G
Sbjct: 535 DQWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLSKWK*RHISFGG 714
Query: 802 REVLIKSVAQAIPSYVMSCFVLPDGLCNEIESMISRFYWGGDASKRGIHWVKWKTMCQPK 861
R LIKSV +IP Y S F +P + +++ + F WGG ++ I W++W+ +C PK
Sbjct: 715 RVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKISWIRWEKLCLPK 894
Query: 862 HVGGL 866
GG+
Sbjct: 895 ERGGI 909
>CO982349
Length = 795
Score = 145 bits (366), Expect = 1e-34
Identities = 76/247 (30%), Positives = 131/247 (52%)
Frame = +3
Query: 614 HWVNLVMNCVTTVNFAVMLNGNPQPTFAPHRGLRQGDPLSPYLFILCGEAFSALIQKSIS 673
HW+ C+ + + ++++N +P F+P RGLRQGDPL+P LF + E + L+++++
Sbjct: 66 HWIR---GCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVD 236
Query: 674 TSALHGIKISRSAPVISHLLFADDSVLFARATVQEAECIKNILATYERASGQKINLEKSM 733
+ + ++ +S L +ADD++ F AT++ + IK IL +E ASG KIN +S
Sbjct: 237 RKRFNSFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESR 416
Query: 734 LSVSRNVPENCFVDLQLLLGVKAVDSYDKYLGLPTIIGKSKTQIFRFVKERVWKKLKGWK 793
P++ + L + YLG+P +I + + KL WK
Sbjct: 417 FGAIWK-PDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWK 593
Query: 794 EQTLSRAGREVLIKSVAQAIPSYVMSCFVLPDGLCNEIESMISRFYWGGDASKRGIHWVK 853
++ +S GR LI ++ A+P Y S F P + ++ ++ +F WGG + +R I WVK
Sbjct: 594 QRHISLGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVK 773
Query: 854 WKTMCQP 860
W+T+C P
Sbjct: 774 WETVCLP 794
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like
protein {Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 89.7 bits (221), Expect(2) = 2e-27
Identities = 43/117 (36%), Positives = 70/117 (59%)
Frame = -3
Query: 616 VNLVMNCVTTVNFAVMLNGNPQPTFAPHRGLRQGDPLSPYLFILCGEAFSALIQKSISTS 675
V LV C++T +++ NG F+P+ G+RQ DP++PYLF+LC E S LI ++
Sbjct: 686 VQLVWYCMSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKK 507
Query: 676 ALHGIKISRSAPVISHLLFADDSVLFARATVQEAECIKNILATYERASGQKINLEKS 732
I+++R +ISHL F DD +LF A + + + I L + +SG K+N++K+
Sbjct: 506 L*RSIQVNRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKT 336
Score = 53.1 bits (126), Expect(2) = 2e-27
Identities = 30/89 (33%), Positives = 45/89 (49%)
Frame = -2
Query: 730 EKSMLSVSRNVPENCFVDLQLLLGVKAVDSYDKYLGLPTIIGKSKTQIFRFVKERVWKKL 789
+ S S+NV D+ LG+++ D KYLG+P + F F+ ++V K+
Sbjct: 342 QNQKFSFSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRF 163
Query: 790 KGWKEQTLSRAGREVLIKSVAQAIPSYVM 818
WK LS GR L K V A+PS++M
Sbjct: 162 SRWKSNLLSMVGRLTLTK*VV*ALPSHIM 76
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 105 bits (262), Expect = 1e-22
Identities = 50/139 (35%), Positives = 76/139 (53%), Gaps = 5/139 (3%)
Frame = +2
Query: 819 SCFVLPDGLCNEIESMISRFYWGGDASKRGIHWVKWKTMCQPKHVGGLGFRDFKSFNLAL 878
S F LP + ++ES+ RF WGG+A R I WV WKT+C PK GGLG +D ++FN L
Sbjct: 5 SFFSLP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTL 184
Query: 879 VAKNWWRIYNYPDSLLGKVFKSVYFSSGRMECAKKGYRPSYAWSRILKTSAM-----IQK 933
+ K W ++ KV +S Y +E G + S W ++KT + +++
Sbjct: 185 LGKWRWDLFYIQQEPWAKVLQSKYGGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKR 364
Query: 934 GSCWRIGEGSRVRIWEDNW 952
+ W++G G R++ WED W
Sbjct: 365 ETIWKVGGGDRIKFWEDLW 421
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 66.2 bits (160), Expect(2) = 8e-21
Identities = 35/99 (35%), Positives = 57/99 (57%)
Frame = -3
Query: 559 ITDNALIAFECFHYMKKRISGRSGMMALKLDMSKAYDRVEWPFLRSVLTHMGFPVHWVNL 618
I D + E + + K++ G G +ALK+D+ KA+D ++ FL SVL G+ + N
Sbjct: 834 IKDCTCVTSEVINMLDKKVFG--GNLALKIDIVKAFDTLDRDFLISVLNKFGYSHTFCNW 661
Query: 619 VMNCVTTVNFAVMLNGNPQPTFAPHRGLRQGDPLSPYLF 657
+ + + ++ +NG P F+ RG+RQGDPLSP L+
Sbjct: 660 IRVILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLY 544
Score = 53.9 bits (128), Expect(2) = 8e-21
Identities = 37/132 (28%), Positives = 60/132 (45%)
Frame = -2
Query: 690 SHLLFADDSVLFARATVQEAECIKNILATYERASGQKINLEKSMLSVSRNVPENCFVDLQ 749
SH++ ADD ++F + T + + N Y+ + GQ I+ KS + + ++P +
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIG-SIPGQRLRVIS 275
Query: 750 LLLGVKAVDSYDKYLGLPTIIGKSKTQIFRFVKERVWKKLKGWKEQTLSRAGREVLIKSV 809
LL D Y G+P GK + V +++ KL WK LS GR L+ SV
Sbjct: 274 DLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNSV 95
Query: 810 AQAIPSYVMSCF 821
+ Y S +
Sbjct: 94 IHGMLLYSFSVY 59
>TC231922
Length = 803
Score = 99.0 bits (245), Expect = 1e-20
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 20/230 (8%)
Frame = -3
Query: 931 IQKGSCWRIGEGSRVRIWEDNWLANGPPVNFRQDVVDELGLTKVADLMLS-------GNR 983
I + WR+G G +++ W+D+WL+ G N +Q +++ +L +S R
Sbjct: 723 IHQNMVWRVGCGDKIKFWQDSWLSEG--CNLQQKYNQLYTISRQ*NLTISKMGKFSQNAR 550
Query: 984 GWNVP----LIEWTFCPAT--ASRIMSVPLPRQPESDQLFWLGTADGLYSVKTGYEFLQE 1037
W L ++ + A + I + + Q D +FW + G+YS K+ Y L
Sbjct: 549 SWEFKWRRRLFDYEYAMAVDFMNEISGISIQNQAH-DSMFWKADSSGVYSTKSAYRLLMP 373
Query: 1038 VVAQDSPSSSLSRGLDQTLWKRFWKAPSMPRVREVSWRVCTGALPVRTKLRQRGVDV-DS 1096
+ S + SR + Q LW K P PR SWR+ LP R L +R + + D
Sbjct: 372 SI-----SPAPSRRIFQILWHL--KIP--PRAAVFSWRLFLDRLPTRGNLSRRSIPIQDI 220
Query: 1097 SCPLCGLEDETVDHLFLGCNITRGCWFASPMGVRV------DPSLKMVDF 1140
CPLCG + E HLF C +T+G W+ S +RV DP+ + F
Sbjct: 219 MCPLCGCQHEEAGHLFFHCKMTKGLWWESMRWIRVIGALPADPASHFIQF 70
>AW757033
Length = 441
Score = 82.8 bits (203), Expect = 9e-16
Identities = 44/128 (34%), Positives = 71/128 (55%)
Frame = -2
Query: 640 FAPHRGLRQGDPLSPYLFILCGEAFSALIQKSISTSALHGIKISRSAPVISHLLFADDSV 699
F+PHRGLRQGDPL+P LF + E + L++++++ + + + +S L +ADD++
Sbjct: 431 FSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYADDTI 252
Query: 700 LFARATVQEAECIKNILATYERASGQKINLEKSMLSVSRNVPENCFVDLQLLLGVKAVDS 759
F AT++ IK IL +E ASG KIN KS + +VP+ + + +
Sbjct: 251 FFGEATMENVRVIKTILRGFELASGLKINFAKSRFG-AISVPD*WRKEAAEFMNCSLLSL 75
Query: 760 YDKYLGLP 767
YLG+P
Sbjct: 74 PFSYLGIP 51
>CA851030
Length = 358
Score = 80.5 bits (197), Expect = 5e-15
Identities = 38/84 (45%), Positives = 52/84 (61%)
Frame = +1
Query: 323 QTEQVVRATREAEKNLDVLLKQEEIVWSQRSRANWLKHGDRNTKFFHSKATQRRKRNLIE 382
+ QV+ +T+ E++LD LLKQEE W QRSRA W K D+NT+FFH K QR+ N I
Sbjct: 106 KNRQVIASTKVVEESLDSLLKQEEEYWQQRSRAIWFKERDKNTEFFHRKTLQRKASNSIT 285
Query: 383 EIQDDNGRKFVRDADIARVLTSYF 406
+IQDD G + I +L ++
Sbjct: 286 KIQDDEGNVCFKPDQIEDILIKFY 357
>BI972659
Length = 453
Score = 80.5 bits (197), Expect = 5e-15
Identities = 46/141 (32%), Positives = 72/141 (50%)
Frame = +1
Query: 712 IKNILATYERASGQKINLEKSMLSVSRNVPENCFVDLQLLLGVKAVDSYDKYLGLPTIIG 771
+K++L +E SG +IN KS + P N D LL + +D YLG+P +
Sbjct: 34 LKSMLRGFEMVSGLRINYAKSQFGIVGFQP-NWAHDAAQLLNCRQLDIPFHYLGMPIAVK 210
Query: 772 KSKTQIFRFVKERVWKKLKGWKEQTLSRAGREVLIKSVAQAIPSYVMSCFVLPDGLCNEI 831
S ++ + + KL W ++ LS GR LIKSV A+P Y++S F +P + +++
Sbjct: 211 ASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLLSFFKIPQRIVDKL 390
Query: 832 ESMISRFYWGGDASKRGIHWV 852
S+ F WGG+ I WV
Sbjct: 391 VSLQRTFMWGGNQHHNRISWV 453
>CF922212
Length = 445
Score = 79.7 bits (195), Expect = 8e-15
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 7/137 (5%)
Frame = -2
Query: 823 LPDGLCNEIESMISRFYWGGDASKRGIHWVKWKTMCQPKHVGGLGFRDFKSFNLALVAKN 882
+P+ + +++ + F WGG ++ I WV W ++C PK GLG RD + FN AL+ K
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 883 WWRIYNYPDSLLGKVFKSVYFSSGRMECAKKGYRPSYAWSRILKTSAMIQKGSCW----- 937
W ++++ L +V S Y ++ ++ S+ W I + + GS +
Sbjct: 261 RWNLFHHQGELGARVLDSKYKRWRNLDEERRVKSESFWWQEISFITHSTEDGSWFEKRTK 82
Query: 938 --RIGEGSRVRIWEDNW 952
R+G ++VR WED W
Sbjct: 81 TGRLGCRAKVRFWEDGW 31
>BG404993
Length = 412
Score = 78.6 bits (192), Expect = 2e-14
Identities = 41/118 (34%), Positives = 58/118 (48%), Gaps = 1/118 (0%)
Frame = -3
Query: 1009 RQPESDQLFWLGTADGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPR 1068
+Q E+D W G YS KT YE LQE + D+ + ++ + WK P+
Sbjct: 347 QQHEADSWTWKADPSGNYSTKTAYELLQEAIRGDN---------EDGIFVQLWKLKIPPK 195
Query: 1069 VREVSWRVCTGALPVRTKLRQRGVDV-DSSCPLCGLEDETVDHLFLGCNITRGCWFAS 1125
+WR+ LP + LR+R V++ DS CPLC +E HLF CN T W+ S
Sbjct: 194 APVFTWRLINDRLPTKVNLRRRQVEISDSLCPLCNNSEEDAAHLFFNCNKTLPFWWES 21
>TC213164
Length = 446
Score = 78.6 bits (192), Expect = 2e-14
Identities = 43/133 (32%), Positives = 69/133 (51%)
Frame = +3
Query: 436 ILSTPFTREDVEEALFQMHPTKAPGLDGFPALFYQKFWPIVGDDISEFCLQVLQGDISPG 495
+L F +++V ++ K+PG DG F ++FW I+ D+ F + +
Sbjct: 15 LLVARFEKKEVRATMWDRGNAKSPGPDGLNFKFIKEFWDILKTDLLRFLDEFYANGVFLK 194
Query: 496 MVNQTLIVLIPKVKKAVFANQYRPISLCNVIFKIISKTIANRMKLILHDLISEAQSAFVP 555
N + LIPKV N+Y+PISL I+KI++K ++ R K +L +I E Q+ F+
Sbjct: 195 RSNAFFLALIPKVHDP*SLNEYKPISLIGCIYKIVAKLLSGRHKKVLPTIIDERQTVFME 374
Query: 556 GRLITDNALIAFE 568
GR N +IA E
Sbjct: 375 GRHTLHNVVIANE 413
>CA851073
Length = 633
Score = 77.8 bits (190), Expect = 3e-14
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Frame = +1
Query: 1014 DQLFWLGTADGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPRVREVS 1073
D + W G+YS K+ Y L S ++ ++K WK PR S
Sbjct: 28 DTMVWKADPCGVYSTKSAYRILMTCNRHVSEAN---------IFKTIWKLKIPPRAAVFS 180
Query: 1074 WRVCTGALPVRTKLRQRGVDV-DSSCPLCGLEDETVDHLFLGCNITRGCWFAS 1125
WR+ LP R L +R V + ++ CPLCG E E DHLF C +TRG W+ S
Sbjct: 181 WRLIKDRLPTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLWWES 339
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 73.6 bits (179), Expect = 6e-13
Identities = 35/97 (36%), Positives = 54/97 (55%)
Frame = +2
Query: 801 GREVLIKSVAQAIPSYVMSCFVLPDGLCNEIESMISRFYWGGDASKRGIHWVKWKTMCQP 860
GR LIKSV A+P +S F +P + +++ ++ +F WGG I WVKW +C P
Sbjct: 8 GRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICNP 187
Query: 861 KHVGGLGFRDFKSFNLALVAKNWWRIYNYPDSLLGKV 897
K GGLG +D +FN AL + W + + + L ++
Sbjct: 188 KIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>BM891637
Length = 427
Score = 72.4 bits (176), Expect = 1e-12
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Frame = -1
Query: 849 IHWVKWKTMCQPKHVGGLGFRDFKSFNLALVAKNWWRIYNYPDSLLGKVFKSVYFSSGRM 908
I W+ W+ C VGGLG +D K N AL+ K W +++ P L ++ S Y +
Sbjct: 412 IAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYKGWRGL 233
Query: 909 ECAKKGYRPSYAWS---RILKTSAMIQKGS--CWRIGEGSRVRIWEDNWLANGPPV 959
+ + Y S W+ I + +MI + CW++G G ++ WED+W+ +G P+
Sbjct: 232 DQGPQKYYFSPWWADLRAINQHQSMIAASNQFCWKVGRGDQILFWEDSWVDDGTPL 65
>BQ453949
Length = 450
Score = 71.6 bits (174), Expect = 2e-12
Identities = 43/121 (35%), Positives = 62/121 (50%), Gaps = 2/121 (1%)
Frame = +3
Query: 1010 QPES-DQLFWLGTADGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPR 1068
QP S D L W +DG YS K+ Y FL+ +DS + ++ + +K W PR
Sbjct: 15 QPSSRDLLLWGSNSDGSYSTKSAYNFLKN---EDSQT------IEDSAFKNIWNLKLPPR 167
Query: 1069 VREVSWRVCTGALPVRTKLRQRGVDVDSS-CPLCGLEDETVDHLFLGCNITRGCWFASPM 1127
S R+ +P + LR+R V + SS CPLC E+ETV H+ C TR W+ + +
Sbjct: 168 ACAFS*RIF*NRIPTKVNLRRRHVKLPSSNCPLCDEEEETVGHVMYSCIKTRHLWWETEL 347
Query: 1128 G 1128
G
Sbjct: 348 G 350
>CF921567
Length = 686
Score = 68.6 bits (166), Expect = 2e-11
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Frame = -1
Query: 1023 DGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPRVREVSWRVCTGALP 1082
+GLYS K+ Y+ L E A ++ + W PR SWR+ LP
Sbjct: 677 NGLYSTKSAYKVL*EGHAS---------AIEDRVLNIMWSLKIPPRASAFSWRLFKNRLP 525
Query: 1083 VRTKLRQRGVDVDS-SCPLCGLEDETVDHLFLGCNITRGCWF 1123
R L++R V + + SCPLC LE+E+V+HLF C+ TR W+
Sbjct: 524 TRENLKRRQVSLHTYSCPLCDLEEESVNHLFFNCSKTRSLWW 399
>BM891241
Length = 407
Score = 58.2 bits (139), Expect(2) = 3e-11
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = -2
Query: 841 GGDASKRGIHWVKWKTMCQPKHVGGLGFRDFKSFNLALVAKNWWRIYNYPDSLLGKVFKS 900
GGD + I WVKW+ +C PK GGLG +D FN+AL+ K W + + L ++ S
Sbjct: 406 GGDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINS 227
Query: 901 VY 902
Y
Sbjct: 226 KY 221
Score = 29.6 bits (65), Expect(2) = 3e-11
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = -3
Query: 911 AKKGYRPSYAWSRILK-----TSAMIQKGSCWRIGEGSRVRIWEDNWL 953
+K GY SY W + K ++ + W++G G ++ W D WL
Sbjct: 189 SKGGY--SYWWRDLRKFYHQSDHSIFHQYMSWKVGCGDKINFWTDKWL 52
>CO986021
Length = 900
Score = 67.0 bits (162), Expect = 5e-11
Identities = 43/138 (31%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Frame = -1
Query: 1010 QPESDQLFWLGTADGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPRV 1069
Q D + W G+YS K+ Y L + + P S +K WK PR
Sbjct: 795 QQLQDSMLWKADPTGIYSTKSAYRLL---LPNNRPGQHSSN------FKILWKLKIPPRA 643
Query: 1070 REVSWRVCTGALPVRTKLRQRGVDV-DSSCPLCGLEDETVDHLFLGCNITRGCWFASPMG 1128
SWR+ L +R L +R V + D CPLCG E HLF C +T G W+ S
Sbjct: 642 ELFSWRLFRDRLSIRANLLRRHVALQDIMCPLCGNHQEEAGHLFFHCRMTIGLWWESMNW 463
Query: 1129 VRV------DPSLKMVDF 1140
R DP+ + F
Sbjct: 462 TRTLGAFLDDPAAHFIQF 409
>TC233392
Length = 1145
Score = 66.2 bits (160), Expect = 9e-11
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 8/219 (3%)
Frame = -1
Query: 1009 RQPESDQLFWLGTADGLYSVKTGYEFLQEVVAQDSPSSSLSRGLDQTLWKRFWKAPSMPR 1068
+Q D W + LYS ++ Y+ LQ + + +L Q LWK K P+
Sbjct: 671 QQQVPDTWVWKHEPNELYSTRSAYKLLQGHLEGEDQDGAL-----QDLWKL--KIPAKAS 513
Query: 1069 VREVSWRVCTGALPVRTKLRQRGVDV-DSSCPLCGLEDETVDHLFLGCNITRGCWFASPM 1127
+ +WR+ LP ++ L +R V + DS CP C + +E H+FL CN R W+ S
Sbjct: 512 I--FAWRLIRDRLPTKSNLHRRQVVLEDSLCPFCRIREEDASHIFLECNKIRPLWWESQT 339
Query: 1128 GVR---VDPSLKMVDFLTMVIRDMDLEVVACVQRFLFA----IWEARNKHIFEEKLFCIA 1180
VR V P K FL V + + + A +W+ RN+ IF+ F
Sbjct: 338 WVRSLGVSPINKRQHFLQHVHGTPGSKRYNRWKTWWIALTWSLWKHRNQVIFQNAQFNGI 159
Query: 1181 GVLDRAASLVSQSTLPFTLAASQEKDNLKRWRRPAENVV 1219
+L+ A L +T + EKD + + + N++
Sbjct: 158 KLLEDAV------FLHWTWIRAMEKDFSMHYNQWSSNLI 60
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,018,232
Number of Sequences: 63676
Number of extensions: 1020852
Number of successful extensions: 4908
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 4800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4872
length of query: 1366
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1257
effective length of database: 5,698,948
effective search space: 7163577636
effective search space used: 7163577636
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0048.9