BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.6
(1124 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229982 UP|PHYA_SOYBN (P42500) Phytochrome A, complete 1880 0.0
TC227575 UP|PHYB_SOYBN (P42499) Phytochrome B, complete 1092 0.0
TC232913 homologue to UP|PHYB_SOYBN (P42499) Phytochrome B, part... 233 4e-61
BG406259 similar to SP|P42500|PHYA Phytochrome A. [Soybean] {Gly... 157 3e-38
BF425620 similar to SP|P42500|PHY Phytochrome A. [Soybean] {Glyc... 148 1e-35
TC212317 similar to UP|PHYB_SOYBN (P42499) Phytochrome B, partia... 142 1e-33
TC231720 similar to UP|PHYA_LATSA (P93673) Phytochrome type A, p... 140 4e-33
AW569309 similar to SP|P42500|PHYA Phytochrome A. [Soybean] {Gly... 119 8e-27
AW186474 similar to SP|P55004|PHY Phytochrome E. [Violet Japane... 116 6e-26
BE822159 weakly similar to GP|6502525|gb| phytochrome B {Pisum s... 50 7e-06
BU545448 homologue to SP|P42499|PHYB Phytochrome B. [Soybean] {G... 49 1e-05
TC227576 homologue to UP|PHYB_SOYBN (P42499) Phytochrome B, part... 37 0.049
BG653749 30 4.6
TC207638 UP|RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta... 30 7.8
>TC229982 UP|PHYA_SOYBN (P42500) Phytochrome A, complete
Length = 3690
Score = 1880 bits (4869), Expect = 0.0
Identities = 959/1136 (84%), Positives = 1032/1136 (90%), Gaps = 13/1136 (1%)
Frame = +2
Query: 1 MSSSRPSQSSNNSGRSRHSARVIAQTTVDAKIHANFEESGSSFDYSSSVRASGTADADHQ 60
MS+SRPSQSS+NS RSRHSAR+ AQ TVDAKIHA FEESGSSFDYSSSVR SGTAD +Q
Sbjct: 8 MSTSRPSQSSSNSRRSRHSARM-AQATVDAKIHATFEESGSSFDYSSSVRVSGTADGVNQ 184
Query: 61 PKSNKVTTAYLHHIQRGKLIQPFGCLLALDEK----TCKVIAYSENAPEMLTMVSHAVPS 116
P+S+KVTTAYL RGK+IQPFGCLLA+DEK TCKVIAYSEN PEMLTMVSHAVPS
Sbjct: 185 PRSDKVTTAYL----RGKMIQPFGCLLAIDEKNHMQTCKVIAYSENEPEMLTMVSHAVPS 352
Query: 117 VGEHPALGIDTDIRTIFTAPSASALQKALGFAEVTLLNPILVHCKTSGKPFYAIIHRVTG 176
VG+HPALGI TDI+T+FTAPS S LQKALG A+V+LLNPILVHCKTSGKPFYAI+HRVTG
Sbjct: 353 VGDHPALGIGTDIKTLFTAPSVSGLQKALGCADVSLLNPILVHCKTSGKPFYAIVHRVTG 532
Query: 177 SLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGY 236
SLI+DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSG+MERLCDTMVQEVFELTGY
Sbjct: 533 SLIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGNMERLCDTMVQEVFELTGY 712
Query: 237 DRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAK 296
DRVMAYKFHEDDHGEVI EITKP LEPYLGLHYPATDIPQASRFLF KNKVRMIVDCHAK
Sbjct: 713 DRVMAYKFHEDDHGEVIREITKPCLEPYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAK 892
Query: 297 QVKVLIDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDNDEDGDGSDSV 356
V+VL DEKL FDL LCGSTLRAPHSCH QYMANMDSIASLV+AVVVNDN+EDGD +D+V
Sbjct: 893 HVRVLQDEKLQFDLILCGSTLRAPHSCHAQYMANMDSIASLVLAVVVNDNEEDGD-TDAV 1069
Query: 357 QPQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELECQILEKNILRTQ 416
QPQK +RLWGLVVCHNT+PRFVPFPLRYA EFL QVFA HV+KEIELE QI+EKNIL
Sbjct: 1070 QPQKTERLWGLVVCHNTTPRFVPFPLRYAREFLPQVFADHVHKEIELEYQIIEKNILHHP 1249
Query: 417 TLLCDMLMRDAPLGILTQSPNLMDLVKCDGAALLYKNKVWMLGVTPSELHIRDIASWLSK 476
L MLMRDAPLGI ++SPN+MDLVKCDGAAL+Y+NKVW LGVTPSE IR+IA WLS+
Sbjct: 1250 GHLLCMLMRDAPLGIASESPNIMDLVKCDGAALIYRNKVWRLGVTPSEPQIREIALWLSE 1429
Query: 477 YHTDSTGLSTDSLSDAGFPGALSLGDLVCGMAAVRITPKDVVFWFRSHTAAEIRWGGAKH 536
YH DST STDSL DAGFP ALSLGD+VCGMA+VR+T KD+VFWFRSHTAAEIRWGGAKH
Sbjct: 1430 YHMDSTSFSTDSLFDAGFPSALSLGDVVCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKH 1609
Query: 537 EPGEQDDGKKMHPRSSFKAFLEVVRARSSPWKDYEMDAIHSLQLILRNAFK-DTDSMDIN 595
E GE+DD ++MHPRSSFKAFLEVV+ARS PWK+YEMDAIHSLQ+ILRNAFK DT+S+D+N
Sbjct: 1610 EAGEKDDSRRMHPRSSFKAFLEVVKARSLPWKEYEMDAIHSLQIILRNAFKEDTESLDLN 1789
Query: 596 TTAIDTRLSDLKIEG--------MQELEAVTSEMVRLIETATVPILAVDIDGLVNGWNIK 647
AI+TRL DLKIEG MQELEAVTSE+VRL TATVPILAVD+DGLVNGWNIK
Sbjct: 1790 AKAINTRLRDLKIEGINDLKIERMQELEAVTSEIVRLDYTATVPILAVDVDGLVNGWNIK 1969
Query: 648 IAELTGLPVGEAIGKHLLTLVEDCSTDRVKKMLDLALSGEEEKNVQFEIKTHGSKMESGP 707
IAELTGLP+GEA GKHLLTLVED STDRVKKML+LAL GEEEKNVQFEIKT GSKM+SGP
Sbjct: 1970 IAELTGLPIGEATGKHLLTLVEDSSTDRVKKMLNLALLGEEEKNVQFEIKTLGSKMDSGP 2149
Query: 708 ISLVVNACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFG 767
ISLVVN CASRDLR+NVVGVCFVA DITAQK VMDKF RIEGDYKAIVQN NPLIPPIFG
Sbjct: 2150 ISLVVNRCASRDLRDNVVGVCFVAHDITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFG 2329
Query: 768 TDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTHMAACRLKNQEAFVNFGIVLNKA 827
TDEFGWCCEWNPAM KLTGWKREEVMDKMLLGE+FGT MAACRLKNQEAFVN G+VLNKA
Sbjct: 2330 TDEFGWCCEWNPAMMKLTGWKREEVMDKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKA 2509
Query: 828 MTGSETEKVGFGFFARSGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQHL 887
MTGSETEKV FGFFAR+GKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQ L
Sbjct: 2510 MTGSETEKVPFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRL 2689
Query: 888 SEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLEGTDLGIEQKRLVHTSAQCQRQLSKIL 947
SEQTA KRL AL+YMKRQIRNPL GIVFSRK LEGT LG EQK+L+ TSAQCQ+QLSKIL
Sbjct: 2690 SEQTASKRLNALSYMKRQIRNPLCGIVFSRKMLEGTALGTEQKQLLRTSAQCQQQLSKIL 2869
Query: 948 DDSDLDSIMDGYLDLEMAEFTLQDVLITSLSQIMARSSARGIRIVNDVAEEIMVEILYGD 1007
DDSDLDSI+DGYLDLEMAEFTL +VL+TSLSQ+M +S+ + IRIVNDVAE+I++E LYGD
Sbjct: 2870 DDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMTKSNGKSIRIVNDVAEQIVMETLYGD 3049
Query: 1008 SLRLQQVLADFLLISINCTPNGGQVVVAASLTKEQLGKSVHLANLELSITHGGSGVPEAL 1067
SLRLQQVLADFLLISIN TPNGGQVVVA +LTKEQLGKSVHL LELSITHGGSGVPE L
Sbjct: 3050 SLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQLGKSVHLVKLELSITHGGSGVPEVL 3229
Query: 1068 LNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGKSSFILSVELAAAHKLK 1123
LNQMFGN+GLESEEGISLLI KLLKLM+GDVRYLREAGKS+FILS ELAAAH LK
Sbjct: 3230 LNQMFGNNGLESEEGISLLIRAKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLK 3397
>TC227575 UP|PHYB_SOYBN (P42499) Phytochrome B, complete
Length = 4095
Score = 1092 bits (2825), Expect = 0.0
Identities = 574/1143 (50%), Positives = 769/1143 (67%), Gaps = 30/1143 (2%)
Frame = +1
Query: 9 SSNNSGRSRHSARVIAQTTVDAKIHANFE---ESGSSFDYSSSVRASGTADADHQPKSNK 65
SSNN+ ++ IAQ T D +HA FE ESG SF+YS S+R + + + Q
Sbjct: 82 SSNNNNNIDSMSKAIAQYTEDG-VHAVFEQSGESGRSFNYSESIRIASESVPEQQ----- 243
Query: 66 VTTAYLHHIQRGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGE------ 119
TAYL IQRG IQPFG ++A+DE + +++ YS+NA +ML + +VPS+ +
Sbjct: 244 -ITAYLVKIQRGGFIQPFGSMIAVDEPSFRILGYSDNARDMLGITPQSVPSLDDKNDAAF 420
Query: 120 --------------HPALGIDTDIRTIFTAPSASALQKALGFAEVTLLNPILVHCKTSGK 165
A + TD+R +FT SA L+KA E++L+NPI +H +TSGK
Sbjct: 421 ALGPQSVPSLDDKNDAAFALGTDVRALFTHSSALLLEKAFSAREISLMNPIWIHSRTSGK 600
Query: 166 PFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDT 225
PFY I+HR+ ++ID EP + + ++ AGA+QS + +AI++LQSLPS ++ LCDT
Sbjct: 601 PFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQEALVRAISQLQSLPSADVKLLCDT 780
Query: 226 MVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKN 285
+V+ V ELTGYDRVM YKFHED+HGEV++E +P LEPY+GLHYPATDIPQASRFLF +N
Sbjct: 781 VVESVRELTGYDRVMVYKFHEDEHGEVVSESKRPDLEPYIGLHYPATDIPQASRFLFKQN 960
Query: 286 KVRMIVDCHAKQVKVLIDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVND 345
+VRMIVDCHA V+V+ DE L L L GSTL APH CH QYMANM SIASLVMAV++N
Sbjct: 961 RVRMIVDCHASAVRVVQDEALVQPLCLVGSTLGAPHGCHAQYMANMGSIASLVMAVIING 1140
Query: 346 NDEDGDGSDSVQPQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELEC 405
NDE+G G S RLWGLVVCH+TS R +PFPLRYACEFL Q F + +N E++L
Sbjct: 1141 NDEEGVGGRS-----SMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAA 1305
Query: 406 QILEKNILRTQTLLCDMLMRDAPLGILTQSPNLMDLVKCDGAALLYKNKVWMLGVTPSEL 465
Q LEK +LRTQTLLCDML+RD+P GI+TQSP++MDLVKCDGAAL ++ + LGVTP+E
Sbjct: 1306 QSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYFQGNYYPLGVTPTEA 1485
Query: 466 HIRDIASWLSKYHTDSTGLSTDSLSDAGFPGALSLGDLVCGMAAVRITPKDVVFWFRSHT 525
IRDI WL +H DSTGLSTDSL DAG+PG LG G IT KD +FWFRSHT
Sbjct: 1486 QIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGLPRLGMQFVGWQVAYITEKDFLFWFRSHT 1665
Query: 526 AAEIRWGGAKHEPGEQDDGKKMHPRSSFKAFLEVVRARSSPWKDYEMDAIHSLQLILRNA 585
A EI+WGGAK + G++MHP SSFKAFLEVV++RS PW++ EMDAIHSLQLILR++
Sbjct: 1666 AKEIKWGGAKLILRTRMMGQRMHPLSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDS 1845
Query: 586 FKDTDSMDINTTAIDTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDIDGLVNGWN 645
FKD + + + +D +S+ +++G+ EL +V EMVRLIETAT PI AVD+DG VNGWN
Sbjct: 1846 FKDAEHRN-SKAVVDPHVSEQELQGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWN 2022
Query: 646 IKIAELTGLPVGEAIGKHLLTLVEDCSTDRVKKMLDLALSGEEEKNVQFEIKTHGSKMES 705
K++ELTGLPV EA+GK +LV D ++ ++ LS EE+KNV+ +++T G + ++
Sbjct: 2023 AKVSELTGLPVEEAMGK---SLVHDLVFKESEETVNKLLSREEDKNVETKMRTFGKEHQN 2193
Query: 706 GPISLVVNACASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPI 765
LVVNAC+S+ NVVGVCFV Q++T QK VM KF I+GDYKAIV +PNPLIPPI
Sbjct: 2194 KAAFLVVNACSSKHFTNNVVGVCFVGQNVTGQKIVMHKFINIQGDYKAIVHSPNPLIPPI 2373
Query: 766 FGTDEFGWCCEWNPAMTKLTGWKRE------EVMDKMLLGEVFGTHMAACRLKNQEAFVN 819
F +D+ C EWN AM KL +V+ KML+GEVFG + C+LK ++
Sbjct: 2374 FASDDNTCCLEWNTAMEKLDPSNENVTVGGVDVIGKMLVGEVFG---SCCQLKGSDSITK 2544
Query: 820 FGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQ 879
F IVL+ A+ G +T+K F F R GKYV+ L+ +K++++EG + G FCFLQ+ SPELQ
Sbjct: 2545 FMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMEGQIIGAFCFLQIMSPELQ 2724
Query: 880 QALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLEGTDLGIEQKRLVHTSAQC 939
QAL Q E+ L R+K L Y+ + ++ PLSGI F+ LE T L EQK+ + TS C
Sbjct: 2725 QALKAQRQQEKEFLGRMKELAYICQGVKKPLSGIRFTNSLLEATSLTNEQKQFLETSVAC 2904
Query: 940 QRQLSKILDDSDLDSIMDGYLDLEMAEFTLQDVLITSLSQIMARSSARGIRIVNDVAEEI 999
++Q+ KI+ D DL+SI DG L+LE EF L +V+ +SQ+M R ++++ D+ EEI
Sbjct: 2905 EKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEI 3084
Query: 1000 MVEILYGDSLRLQQVLADFLLISINCTPN-GGQVVVAASLTKEQLGKSVHLANLELSITH 1058
+YGD LR+QQVL+DFLL + P+ G V + +Q+ + L + E +
Sbjct: 3085 KTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVRPRIKQISDGLTLLHAEFRMVC 3264
Query: 1059 GGSGVPEALLNQMFGNDGLESEEGISLLISRKLLKLMSGDVRYLREAGKSSFILSVELAA 1118
G G+P L+ MF N ++EG+ L +SRK+LKLM+G+V+Y+REA + F + +EL
Sbjct: 3265 PGEGLPPELIQDMFNNSRWGTQEGLGLSMSRKILKLMNGEVQYIREAERCYFYVLLELPV 3444
Query: 1119 AHK 1121
+
Sbjct: 3445 TRR 3453
>TC232913 homologue to UP|PHYB_SOYBN (P42499) Phytochrome B, partial (20%)
Length = 712
Score = 233 bits (594), Expect = 4e-61
Identities = 112/211 (53%), Positives = 151/211 (71%)
Frame = +2
Query: 672 STDRVKKMLDLALSGEEEKNVQFEIKTHGSKMESGPISLVVNACASRDLRENVVGVCFVA 731
S + + K+L AL GEE+KNV+ +++T G + ++ + LVVNAC+S+D NV GVCFV
Sbjct: 35 SEETMNKLLSRALKGEEDKNVEIKMRTFGPEHQNKAVFLVVNACSSKDFTNNVDGVCFVG 214
Query: 732 QDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREE 791
QD+T QK VMDKF I+GDYKAIV +PNPLIPPIF +D+ C EWN AM KLT W R +
Sbjct: 215 QDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTDWGRVD 394
Query: 792 VMDKMLLGEVFGTHMAACRLKNQEAFVNFGIVLNKAMTGSETEKVGFGFFARSGKYVECL 851
V+ KML+GEVFG + C+LK ++ F IVL+ A+ G +T+K F F R GKYV+
Sbjct: 395 VIGKMLVGEVFG---SCCQLKGSDSITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTF 565
Query: 852 LSVSKKLDVEGLVTGVFCFLQLASPELQQAL 882
L+ +K++++EG + G FCFLQ+ SPELQQAL
Sbjct: 566 LTANKRVNMEGQIIGAFCFLQIMSPELQQAL 658
>BG406259 similar to SP|P42500|PHYA Phytochrome A. [Soybean] {Glycine max},
partial (8%)
Length = 298
Score = 157 bits (396), Expect = 3e-38
Identities = 77/97 (79%), Positives = 88/97 (90%)
Frame = +3
Query: 833 TEKVGFGFFARSGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQHLSEQTA 892
TEKV FGFFAR GK+VEC+LS++KKLD EG+VTGVFCFLQLAS ELQQALHIQ +SEQT+
Sbjct: 6 TEKVPFGFFARDGKHVECILSMTKKLDAEGVVTGVFCFLQLASAELQQALHIQRISEQTS 185
Query: 893 LKRLKALTYMKRQIRNPLSGIVFSRKTLEGTDLGIEQ 929
LKRLK LTY+KRQI+NPL GI+FSRK LEGT+LG EQ
Sbjct: 186 LKRLKDLTYLKRQIQNPLYGIMFSRKLLEGTELGAEQ 296
>BF425620 similar to SP|P42500|PHY Phytochrome A. [Soybean] {Glycine max},
partial (8%)
Length = 304
Score = 148 bits (374), Expect = 1e-35
Identities = 73/97 (75%), Positives = 85/97 (87%)
Frame = +2
Query: 839 GFFARSGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKA 898
G AR+G+YVECLL+VSKKLDV+GL+TGVFCFLQLA+PELQQALHIQ LSEQ A KRL A
Sbjct: 14 GLLARNGEYVECLLAVSKKLDVQGLLTGVFCFLQLATPELQQALHIQRLSEQAASKRLNA 193
Query: 899 LTYMKRQIRNPLSGIVFSRKTLEGTDLGIEQKRLVHT 935
L+YMKRQIRNPL GIV+S+ LEGTDLG +Q +L+ T
Sbjct: 194 LSYMKRQIRNPLCGIVYSQTMLEGTDLGTQQTQLLRT 304
>TC212317 similar to UP|PHYB_SOYBN (P42499) Phytochrome B, partial (14%)
Length = 733
Score = 142 bits (357), Expect = 1e-33
Identities = 74/170 (43%), Positives = 109/170 (63%), Gaps = 2/170 (1%)
Frame = +2
Query: 69 AYLHHIQRGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEH--PALGID 126
AYL IQ IQPFG ++ +DE + ++ YS+NA +ML + +VP + + A +
Sbjct: 11 AYLVKIQHCGFIQPFGSMITVDEPSICILGYSDNAHDMLGITLQSVPLLDDKNDAAFSLG 190
Query: 127 TDIRTIFTAPSASALQKALGFAEVTLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVK 186
TD+R +FT SA L+KA E++L+NPI +H +TSGKPFY I+HR+ G ++ID EPV
Sbjct: 191 TDVRALFTHSSA*LLEKAFSAREISLMNPIWIHSRTSGKPFYGILHRIDG-IVIDLEPVL 367
Query: 187 PYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGY 236
+ ++ AGA+QS KLA +AI +LQ LPSG + LCDT+ + G+
Sbjct: 368 TEDPALSIAGAVQSQKLAVRAILQLQCLPSGDAKLLCDTVALKSHTSQGF 517
>TC231720 similar to UP|PHYA_LATSA (P93673) Phytochrome type A, partial (7%)
Length = 507
Score = 140 bits (352), Expect = 4e-33
Identities = 72/85 (84%), Positives = 77/85 (89%)
Frame = +2
Query: 1037 SLTKEQLGKSVHLANLELSITHGGSGVPEALLNQMFGNDGLESEEGISLLISRKLLKLMS 1096
+LT++QLGK VHLANLE SITH GVPE LLNQMFG DG ESEEGIS+LISRKLLKLM+
Sbjct: 2 TLTQQQLGKLVHLANLEFSITHDSFGVPETLLNQMFGRDGHESEEGISMLISRKLLKLMN 181
Query: 1097 GDVRYLREAGKSSFILSVELAAAHK 1121
GDVRYLREAGKSSFILSVELAAAHK
Sbjct: 182 GDVRYLREAGKSSFILSVELAAAHK 256
>AW569309 similar to SP|P42500|PHYA Phytochrome A. [Soybean] {Glycine max},
partial (7%)
Length = 259
Score = 119 bits (298), Expect = 8e-27
Identities = 58/85 (68%), Positives = 71/85 (83%)
Frame = +2
Query: 901 YMKRQIRNPLSGIVFSRKTLEGTDLGIEQKRLVHTSAQCQRQLSKILDDSDLDSIMDGYL 960
YMKRQIRNPL GIVF RK +EGTDLG EQ +L+ TSA CQ+QL KILDDSDL +I+ G
Sbjct: 2 YMKRQIRNPLCGIVFDRKMMEGTDLGTEQNQLLRTSAHCQQQLIKILDDSDLSTIIYGCW 181
Query: 961 DLEMAEFTLQDVLITSLSQIMARSS 985
D+EMAEFT+ +VL+TSLSQ+M +S+
Sbjct: 182 DVEMAEFTMHEVLVTSLSQVMTKSN 256
>AW186474 similar to SP|P55004|PHY Phytochrome E. [Violet Japanese morning
glory] {Pharbitis nil}, partial (10%)
Length = 449
Score = 116 bits (290), Expect = 6e-26
Identities = 55/147 (37%), Positives = 94/147 (63%)
Frame = +1
Query: 820 FGIVLNKAMTGSETEKVGFGFFARSGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQ 879
F I+L + ++G ++EK+ FGFF R+G+++E ++ +K++D G + G FCFLQ+ P+L
Sbjct: 1 FMILLYRGISGQDSEKIPFGFFDRNGEFIETYITANKRIDTGGNMLGCFCFLQIVMPDLN 180
Query: 880 QALHIQHLSEQTALKRLKALTYMKRQIRNPLSGIVFSRKTLEGTDLGIEQKRLVHTSAQC 939
Q + ++ K L Y+ ++++ PL+GI F+RK LE T + QK+ + TS C
Sbjct: 181 QPSEEHKPRGRESISESKELAYILQEMKKPLNGIRFTRKLLENTAVSENQKQFLDTSDAC 360
Query: 940 QRQLSKILDDSDLDSIMDGYLDLEMAE 966
+RQ+ I++D++L SI +G L L M E
Sbjct: 361 ERQILAIIEDTNLXSINEGTLQLNMEE 441
>BE822159 weakly similar to GP|6502525|gb| phytochrome B {Pisum sativum},
partial (3%)
Length = 565
Score = 49.7 bits (117), Expect = 7e-06
Identities = 23/58 (39%), Positives = 39/58 (66%), Gaps = 1/58 (1%)
Frame = -1
Query: 1060 GSGVPEALLNQMF-GNDGLESEEGISLLISRKLLKLMSGDVRYLREAGKSSFILSVEL 1116
G G+P +L+ MF G + ++EG+ L +SRK+L +SG V+Y+RE K F++ +E+
Sbjct: 565 GQGIPSNVLHDMFEGGNQWTTQEGLGLYMSRKILSRISGHVQYVREQNKCYFLIDLEI 392
>BU545448 homologue to SP|P42499|PHYB Phytochrome B. [Soybean] {Glycine max},
partial (7%)
Length = 509
Score = 48.9 bits (115), Expect = 1e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = -3
Query: 977 LSQIMARSSARGIRIVNDVAEEIMVEILYGDSLRLQQVLADFLLISINCTPN 1028
+SQ+M R ++++ D+ EEI +YGD LR+QQVL+DFLL + P+
Sbjct: 504 VSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPS 349
>TC227576 homologue to UP|PHYB_SOYBN (P42499) Phytochrome B, partial (3%)
Length = 840
Score = 37.0 bits (84), Expect = 0.049
Identities = 16/35 (45%), Positives = 26/35 (73%)
Frame = +2
Query: 1087 ISRKLLKLMSGDVRYLREAGKSSFILSVELAAAHK 1121
+SRK+LKLM+G+V+Y+REA + F + +EL +
Sbjct: 8 MSRKILKLMNGEVQYIREAQRCYFYVLLELPVTRR 112
>BG653749
Length = 417
Score = 30.4 bits (67), Expect = 4.6
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 678 KMLDLALSGEEEKNV-QFEIKTHGSKMESGPISLVVNACASRDLRE 722
K+ +L LSG K + QF+I+ HGS E P++L + DL E
Sbjct: 129 KLRELGLSGVGVKGLFQFQIREHGSNTELAPLNLDLTHADLWDLPE 266
>TC207638 UP|RPC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain
(PEP) (Plastid-encoded RNA polymerase beta'' subunit)
(RNA polymerase beta'' subunit) , complete
Length = 4156
Score = 29.6 bits (65), Expect = 7.8
Identities = 11/42 (26%), Positives = 27/42 (64%)
Frame = +2
Query: 623 RLIETATVPILAVDIDGLVNGWNIKIAELTGLPVGEAIGKHL 664
+++E ++ ++++++ V+ WN +I ++ G+P G IG L
Sbjct: 3467 QVLEVRSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAEL 3592
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,713,705
Number of Sequences: 63676
Number of extensions: 574466
Number of successful extensions: 2757
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2735
length of query: 1124
length of database: 12,639,632
effective HSP length: 107
effective length of query: 1017
effective length of database: 5,826,300
effective search space: 5925347100
effective search space used: 5925347100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Lotus: description of TM0048.6