TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0048.5
         (117 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD401803 homologue to GP|14488090|gb|A AT5g26741 {Arabidopsis th...   124  8e-30
CA852092 similar to GP|14488090|gb|A AT5g26741 {Arabidopsis thal...   115  2e-27
CK606023                                                               28  0.47
TC225687 similar to GB|AAM64742.1|21592793|AY087186 s1Fa {Arabid...    28  0.62
BE823641                                                               28  0.62
TC224589 similar to UP|Q43522 (Q43522) Tfm5 protein, partial (39%)     28  0.62
AW508814                                                               28  0.81
TC214216 similar to UP|Q94FV4 (Q94FV4) EIL1, partial (13%)             27  1.1
BE803996                                                               27  1.1
TC218122                                                               27  1.4
CA853901 similar to GP|21702230|emb dihydrofolate reductase-thym...    27  1.8
AW459451                                                               27  1.8
AW164615                                                               27  1.8
TC209536 UP|Q42811 (Q42811) GmCK3p  (Fragment) , complete              27  1.8
TC213171 similar to UP|Q9FJZ3 (Q9FJZ3) Mannan endo-1,4-beta-mann...    27  1.8
TC219627                                                               26  2.4
TC206190 similar to PIR|C86407|C86407 F3H9.20 protein - Arabidop...    26  2.4
BM178013 similar to SP|O64967|HMD2 3-hydroxy-3-methylglutaryl-co...    26  3.1
TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RI...    26  3.1
TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial...    26  3.1

>CD401803 homologue to GP|14488090|gb|A AT5g26741 {Arabidopsis thaliana},
           partial (31%)
          Length = 470

 Score =  124 bits (310), Expect = 8e-30
 Identities = 69/110 (62%), Positives = 81/110 (72%), Gaps = 3/110 (2%)
 Frame = -1

Query: 11  FRSESLGHYYDYNY---YPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIRAKKVLW 67
           FRSE    YY YN    Y +QN TM+EKRQLFLRSYQFC+KKS TERIKGSL+RAKK++W
Sbjct: 461 FRSEVPFGYYCYNNNNNYSEQNNTMVEKRQLFLRSYQFCRKKSLTERIKGSLVRAKKIVW 282

Query: 68  LRLWSSSAGGFRKLVFFPRFRCTFYYRRRRFSRLLNRHHRSKTESSSCFW 117
           LRL   SA   R+      F+C FYYRRRRF +LL+ ++R KTESSSC W
Sbjct: 281 LRL--RSACKLRR-----SFKCAFYYRRRRFFQLLHSNNR-KTESSSCLW 156


>CA852092 similar to GP|14488090|gb|A AT5g26741 {Arabidopsis thaliana},
           partial (34%)
          Length = 473

 Score =  115 bits (289), Expect = 2e-27
 Identities = 58/93 (62%), Positives = 71/93 (75%)
 Frame = +3

Query: 25  YPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIRAKKVLWLRLWSSSAGGFRKLVFF 84
           Y +QN TM+EKRQ+FLRSYQFC+KKSFTERIKGSL+RAKK++WLRL   SA   R+    
Sbjct: 33  YTEQNNTMLEKRQVFLRSYQFCRKKSFTERIKGSLVRAKKIVWLRL--RSACKLRR---- 194

Query: 85  PRFRCTFYYRRRRFSRLLNRHHRSKTESSSCFW 117
              +C FYYRRRRF +LL+ ++   TESSSC W
Sbjct: 195 -SLKCAFYYRRRRFFQLLHNNNNRITESSSCLW 290


>CK606023 
          Length = 538

 Score = 28.5 bits (62), Expect = 0.47
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 68  LRLWSSSAGGFRKLVFFPRFRCTFYYR 94
           LR+W   A GF  L FFP F C  + R
Sbjct: 512 LRMWLLFATGFPTLFFFPGFCCLVFPR 432


>TC225687 similar to GB|AAM64742.1|21592793|AY087186 s1Fa {Arabidopsis
           thaliana;} , partial (86%)
          Length = 598

 Score = 28.1 bits (61), Expect = 0.62
 Identities = 11/23 (47%), Positives = 16/23 (68%)
 Frame = -3

Query: 89  CTFYYRRRRFSRLLNRHHRSKTE 111
           CT +YR R+F  ++   HR+KTE
Sbjct: 476 CTHHYRTRKFI*IVQFKHRTKTE 408


>BE823641 
          Length = 708

 Score = 28.1 bits (61), Expect = 0.62
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 36  RQLFLRSYQFCQKKSFTERIKGSLIRAKK 64
           RQ++LRSY+F +K+S  E+ +    R K+
Sbjct: 516 RQMYLRSYKFSRKESVPEKTQKCFGRVKE 430


>TC224589 similar to UP|Q43522 (Q43522) Tfm5 protein, partial (39%)
          Length = 768

 Score = 28.1 bits (61), Expect = 0.62
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 12  RSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKK 49
           RSE LG     N     N T +EKR+L ++ Y+ C  K
Sbjct: 659 RSEKLGWQAPKNNNNTCNTT*IEKRKLTIKRYEICMTK 546


>AW508814 
          Length = 376

 Score = 27.7 bits (60), Expect = 0.81
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 36  RQLFLRSYQFCQKKSFTERIKGSLIRAK 63
           RQ++LRSY+F +K+S  E+ +    R K
Sbjct: 291 RQMYLRSYKFSRKESVPEKTQKCFGRVK 374


>TC214216 similar to UP|Q94FV4 (Q94FV4) EIL1, partial (13%)
          Length = 690

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 81  LVFFPRFRCTFYYRRRRFSRLLNRHHRSKTESSSCFW 117
           L FFP F C F++      ++L +HH S +      W
Sbjct: 79  LSFFPPFLCFFFFFH*FLLKVLTQHHPSSSSYVFDLW 189


>BE803996 
          Length = 359

 Score = 27.3 bits (59), Expect = 1.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 81  LVFFPRFRCTFYYRRRRFSRLLNRHHRSKTESSSCFW 117
           L FFP F C F++      ++L +HH S +      W
Sbjct: 2   LSFFPPFLCFFFFFH*FLLKVLTQHHPSSSSYVFDLW 112


>TC218122 
          Length = 864

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +1

Query: 12  RSESLGHYYDYNYYPDQN----YTMMEKRQLFLRSYQFCQKK 49
           R  S+G Y   NY P QN    YT+ME RQL L     C K+
Sbjct: 310 RLRSVG-YLLMNYSPFQNKMNGYTVMESRQLVLPLSFLCIKR 432


>CA853901 similar to GP|21702230|emb dihydrofolate reductase-thymidylate
           synthase {Pisum sativum}, partial (14%)
          Length = 544

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
 Frame = +3

Query: 77  GFRKLVFFPRFRCTFYYR-------RRRFSRLLNRH 105
           GF  L FF RFRC FY +       R RF  LL+ H
Sbjct: 12  GFSSLSFF-RFRCFFYQQKDRKLCIRERFLVLLHPH 116


>AW459451 
          Length = 426

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 53  ERIKGSLIRAKKVLWLRLWSSSAG 76
           +R+ G ++  ++++W+ LW  S G
Sbjct: 117 DRVLGKIVSGERIVWIELWD*SHG 46


>AW164615 
          Length = 442

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +2

Query: 4  VTVNPSLFRSESLGHYYDYNYYPDQNYTMMEKRQLFLRSYQFCQKKSFTERIKGSLIRAK 63
          +   P L       ++ D +Y P  NYT   +  L L SYQ     S   ++   L + K
Sbjct: 17 IVARPVLTSYYKSPYFRDRSYDPYTNYTSPNETVLCLDSYQ-----SMYSQLLCGLCQHK 181

Query: 64 KVLWLRLWSSSAGGFRKLVFF 84
          +V  LR+ +  A GF + + F
Sbjct: 182EV--LRVGAIFASGFIRAIRF 238


>TC209536 UP|Q42811 (Q42811) GmCK3p  (Fragment) , complete
          Length = 1658

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 18   HYYDYNYYPDQNYTMMEKRQLFLRSY 43
            H  DYN YPD      E+RQ F+++Y
Sbjct: 1086 HILDYNKYPD-----FEERQRFVQAY 1148


>TC213171 similar to UP|Q9FJZ3 (Q9FJZ3) Mannan endo-1,4-beta-mannosidase
           (At5g66460), partial (26%)
          Length = 437

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +3

Query: 69  RLWSSSAGGFRKLVFFPRF 87
           R W+ S GG+R L +FP F
Sbjct: 264 RTWAFSDGGYRPLQYFPGF 320


>TC219627 
          Length = 667

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -1

Query: 7   NPSLFRSESLGHYYDYNYYPDQNYTMME----KRQLFLRSYQFCQKKSFTERIKGSLIRA 62
           N + F + SL   Y+YN   + NYT  +     RQ  +RS      +S   R+    +  
Sbjct: 511 NLNHFTNLSLKQTYNYNAQSESNYTRSQ*CFFHRQASIRS----DLESMRLRLLIPFLST 344

Query: 63  KKVLWLRLWS 72
             V W+  WS
Sbjct: 343 ATVAWITGWS 314


>TC206190 similar to PIR|C86407|C86407 F3H9.20 protein - Arabidopsis thaliana
           {Arabidopsis thaliana;} , partial (78%)
          Length = 1227

 Score = 26.2 bits (56), Expect = 2.4
 Identities = 11/27 (40%), Positives = 13/27 (47%)
 Frame = -3

Query: 89  CTFYYRRRRFSRLLNRHHRSKTESSSC 115
           C   Y   R  R   R HR +T+SS C
Sbjct: 121 CAAVYSESRTGRAY*RRHRHRTQSSQC 41


>BM178013 similar to SP|O64967|HMD2 3-hydroxy-3-methylglutaryl-coenzyme A
           reductase 2 (EC 1.1.1.34) (HMG- CoA reductase 2).,
           partial (23%)
          Length = 439

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 100 RLLNRHHRSKTESSSCFW 117
           RLL R H+ + +  SCFW
Sbjct: 4   RLLGR*HQQRLQGHSCFW 57


>TC229714 weakly similar to UP|Q9SRM0 (Q9SRM0) F9F8.8 protein (RING zinc
           finger protein; 17145-17621), partial (34%)
          Length = 915

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 45  FCQKKSFTERIKGSLIRAKKVLWLRLWSSSAGGF 78
           FC+ KS++ RIK SL++ +K L L +  +S G F
Sbjct: 724 FCR*KSYSIRIKFSLVKKEKNLELEV--NSKGWF 629


>TC227966 similar to UP|Q8H1L0 (Q8H1L0) PIN-like protein, partial (52%)
          Length = 992

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 56  KGSLIRAKKVLWLRLWSSSA 75
           KG ++ ++   W +LWSSSA
Sbjct: 236 KGCMVTSQGASWCKLWSSSA 295


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.329    0.138    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,202,025
Number of Sequences: 63676
Number of extensions: 111415
Number of successful extensions: 875
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of query: 117
length of database: 12,639,632
effective HSP length: 93
effective length of query: 24
effective length of database: 6,717,764
effective search space: 161226336
effective search space used: 161226336
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)