BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0045.6
(214 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF595917 35 0.020
TC213899 35 0.020
BM527030 35 0.033
TC233956 34 0.057
TC231841 33 0.074
CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigr... 33 0.074
CO984521 33 0.097
TC222557 33 0.097
TC231922 33 0.13
BU765000 33 0.13
BI702137 32 0.17
TC213061 32 0.22
TC232958 32 0.28
CO979823 31 0.37
BU550114 similar to GP|4966372|gb|A ESTs gb|N38586 and gb|N38613... 31 0.37
BG239687 31 0.37
TC222628 30 0.82
TC233777 30 1.1
CA851073 29 1.4
CF921567 28 2.4
>BF595917
Length = 419
Score = 35.4 bits (80), Expect = 0.020
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNLWK 118
F +W+ P V FAWR L ++P+++NL++
Sbjct: 86 FEELWNLKVPIKVAVFAWRLLRDRLPTKVNLYR 184
>TC213899
Length = 497
Score = 35.4 bits (80), Expect = 0.020
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNLWK 118
F +W P + AFAWR L ++P+R+NL K
Sbjct: 60 FEELWKLKVP*KIAAFAWRLLKDRLPTRINL*K 158
>BM527030
Length = 421
Score = 34.7 bits (78), Expect = 0.033
Identities = 18/55 (32%), Positives = 27/55 (48%)
Frame = +3
Query: 62 DTYFEHPDFEPLVEGPEALAQVLGFSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
+ YF + L+E + VL + +W A P NV F W+ K+P+R NL
Sbjct: 120 ECYFVRDPYLFLIENTNPV-YVLFYRSIWMLAIPHNVAIFEWKLSKDKLPTRKNL 281
>TC233956
Length = 757
Score = 33.9 bits (76), Expect = 0.057
Identities = 14/37 (37%), Positives = 20/37 (53%)
Frame = +2
Query: 82 QVLGFSHVWHFAAPSNVKAFAWRFLLVKIPSRLNLWK 118
Q LGF +W P +F WR L ++P++ NL K
Sbjct: 149 QHLGFKKLWEIKVPPKALSFVWRLLWDRLPTKDNLIK 259
>TC231841
Length = 791
Score = 33.5 bits (75), Expect = 0.074
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +3
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
F +W PS + FAWR + ++P+R NL
Sbjct: 165 FEELWKLKLPSKITIFAWRLIRDRLPTRSNL 257
>CD396188 weakly similar to GP|6175788|gb|A ORF144 {Xestia c-nigrum
granulovirus}, partial (5%)
Length = 701
Score = 33.5 bits (75), Expect = 0.074
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = -1
Query: 85 GFSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
GF +W P +FAWR L ++PS+ NL
Sbjct: 638 GFRQLWEIKIPPTALSFAWRLLWDRLPSKENL 543
>CO984521
Length = 716
Score = 33.1 bits (74), Expect = 0.097
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNLWK 118
F +W P V FAWR + K+P++ NL K
Sbjct: 544 FKELWKLRVPLKVAIFAWRLIQDKLPTKANLRK 446
>TC222557
Length = 1002
Score = 33.1 bits (74), Expect = 0.097
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 71 EPLVEGPEALAQVLGFSHVWHFAAPSNVKAFAWRFLLVKIPSRLNLWK 118
E L+ EAL + W P FAWR + +IP++ NLW+
Sbjct: 403 EQLIRLDEALEDL------WQLKIPLKATTFAWRLIKERIPTKGNLWR 528
>TC231922
Length = 803
Score = 32.7 bits (73), Expect = 0.13
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
F +WH P F+WR L ++P+R NL
Sbjct: 342 FQILWHLKIPPRAAVFSWRLFLDRLPTRGNL 250
>BU765000
Length = 425
Score = 32.7 bits (73), Expect = 0.13
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = +2
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
F +W P V FAWR L ++P+R NL
Sbjct: 50 FKELWKLKVPPKVAVFAWRLLKDRLPTRDNL 142
>BI702137
Length = 427
Score = 32.3 bits (72), Expect = 0.17
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +2
Query: 85 GFSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
GF +W P +FAWR L ++PS+ NL
Sbjct: 56 GFRQLWEIKIPPAALSFAWRLLWDRLPSKDNL 151
>TC213061
Length = 823
Score = 32.0 bits (71), Expect = 0.22
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 63 TYFEHPDFEPLVEGPEALAQVLGFSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
+Y + + EG Q F +W P V FAWR L +P+R NL
Sbjct: 161 SYLARSAYRVIREGIPEEEQDREFKELWKLKVPMKVTMFAWRLLKDILPTRDNL 322
>TC232958
Length = 758
Score = 31.6 bits (70), Expect = 0.28
Identities = 28/87 (32%), Positives = 41/87 (46%), Gaps = 3/87 (3%)
Frame = +1
Query: 125 LISFGYNRSKDEFLVVLIKLC-NLLHLAKNKITIISLRNYVRDYFDIADTEYYFYKFNLD 183
L FGY+ S D+FLVV C N H A N I SLR + Y +++
Sbjct: 484 LCGFGYDPSTDDFLVV--HACYNPKHQA-NCAEIFSLRANAWKGIEGIHFPYTHFRYTNR 654
Query: 184 Y--IGQFLCDSLYWLKTKKATNVLVVV 208
Y G FL +++WL + ++ V+V
Sbjct: 655 YNQFGSFLNGAIHWLAFRINASINVIV 735
>CO979823
Length = 853
Score = 31.2 bits (69), Expect = 0.37
Identities = 10/31 (32%), Positives = 18/31 (57%)
Frame = -2
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
F+ +W P+ FAWR + ++P++ NL
Sbjct: 600 FAEIWKLKIPTKAAVFAWRLVRDRLPTKSNL 508
>BU550114 similar to GP|4966372|gb|A ESTs gb|N38586 and gb|N38613 come from
this gene. {Arabidopsis thaliana}, partial (28%)
Length = 605
Score = 31.2 bits (69), Expect = 0.37
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = +2
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSR 113
F H W + PSN FA R L ++P+R
Sbjct: 104 FQHFWECSVPSNALVFARRLLTFRLPTR 187
>BG239687
Length = 443
Score = 31.2 bits (69), Expect = 0.37
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = -3
Query: 89 VWHFAAPSNVKAFAWRFLLVKIPSRLNLWK 118
VW + PSNV AF+W L +I ++ NL K
Sbjct: 117 VWKASIPSNVAAFSWSLLQDRIQTKENLSK 28
>TC222628
Length = 688
Score = 30.0 bits (66), Expect = 0.82
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 66 EHPDFEPLVEGPEALAQVLGFSHVWHFAAPSNVKAFAWRFLLVKIP 111
EH + ++ P L+ S W APS V F+WR L K+P
Sbjct: 293 EHNKLDLNLQNPPLLS-----SKFWESKAPSKVLVFSWRLLQHKLP 415
>TC233777
Length = 503
Score = 29.6 bits (65), Expect = 1.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 95 PSNVKAFAWRFLLVKIPSRLNL 116
PS + FAWR L ++P+R NL
Sbjct: 26 PSKISVFAWRLLRNRLPTRTNL 91
>CA851073
Length = 633
Score = 29.3 bits (64), Expect = 1.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 86 FSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
F +W P F+WR + ++P+R NL
Sbjct: 130 FKTIWKLKIPPRAAVFSWRLIKDRLPTRHNL 222
>CF921567
Length = 686
Score = 28.5 bits (62), Expect = 2.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 70 FEPLVEGPEALAQVLGFSHVWHFAAPSNVKAFAWRFLLVKIPSRLNL 116
++ L EG + + + +W P AF+WR ++P+R NL
Sbjct: 650 YKVL*EGHASAIEDRVLNIMWSLKIPPRASAFSWRLFKNRLPTRENL 510
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.144 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,488,108
Number of Sequences: 63676
Number of extensions: 150170
Number of successful extensions: 976
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of query: 214
length of database: 12,639,632
effective HSP length: 93
effective length of query: 121
effective length of database: 6,717,764
effective search space: 812849444
effective search space used: 812849444
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0045.6