TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0045.10
         (257 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC216081 similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial ...   124  6e-29
TC216079 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, p...   111  4e-25
TC203800 weakly similar to UP|Q8WXA1 (Q8WXA1) Inhibitory PAS dom...    93  1e-19
TC203904                                                               67  1e-11
TC216080 weakly similar to GB|CAE76612.1|38567324|BX842641 relat...    40  0.001
TC214506 similar to PIR|T01932|T01932 RNA binding protein homolo...    31  0.49
TC226414 homologue to UP|Q84V95 (Q84V95) Pyruvate decarboxylase ...    30  1.1
TC233749 similar to UP|Q7PTT8 (Q7PTT8) ENSANGP00000015447 (Fragm...    30  1.4
TC226413 homologue to UP|DCP2_PEA (P51851) Pyruvate decarboxylas...    30  1.4
CB063339                                                               30  1.4
TC214811 homologue to UP|VAB2_HORVU (Q40079) Vacuolar ATP syntha...    29  1.8
AW703994                                                               29  2.4
AW831928                                                               28  4.1
TC208780 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {A...    28  4.1
TC212262 similar to UP|PODK_FLAPR (Q42736) Pyruvate, phosphate d...    28  5.4
TC228573                                                               27  9.2

>TC216081 similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial (22%)
          Length = 1046

 Score =  124 bits (310), Expect = 6e-29
 Identities = 70/134 (52%), Positives = 88/134 (65%), Gaps = 8/134 (5%)
 Frame = +2

Query: 22  SMAVCHRHRSSRATKAT--LTEID-AEHEVTLKMFDDLIQRILVKKATPDWLPFLPGYSF 78
           S++V  RHRSS+A  A   + E+D AE++V LK FDDLIQRILVKK TPDWLPF+PG SF
Sbjct: 128 SLSVPLRHRSSKAAAAGGHVVEVDMAEYDVALKHFDDLIQRILVKKNTPDWLPFVPGSSF 307

Query: 79  WVPPRPSPSSVVHLAHRFNSSD--QPQDALNLESH-HGWPDPNYFLQGNAPAHSGESGVE 135
           WVPPR SPS+V  L H+ +  D   P D   L S   GWP  N+F+  N      ++ +E
Sbjct: 308 WVPPRLSPSNVADLVHKLSYEDHRHPHDCSPLLSTLRGWPSDNFFIDENESTDGEDTDIE 487

Query: 136 LNLPE--EGTVKVK 147
           +N P+   GTVKVK
Sbjct: 488 INGPDGTNGTVKVK 529


>TC216079 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial (19%)
          Length = 538

 Score =  111 bits (277), Expect = 4e-25
 Identities = 73/145 (50%), Positives = 85/145 (58%), Gaps = 5/145 (3%)
 Frame = +3

Query: 8   KVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEID-AEHEVTLKMFDDLIQRILVKKAT 66
           K  PL R P     S++V  R RSS+A  A + E+D AE++V LK FDDLIQRILVKK T
Sbjct: 138 KAGPLRRLP-----SLSVPLRRRSSKAA-AAMGEVDMAEYDVALKHFDDLIQRILVKKNT 299

Query: 67  PDWLPFLPGYSFWVPPRPSPSSVVHLAHRFNSSD---QPQDALNLESH-HGWPDPNYFLQ 122
           PDWLPF+PG SFWVPPRPS S+V  L H+    D    P D   L S   GWP  NYF+ 
Sbjct: 300 PDWLPFVPGSSFWVPPRPSHSNVADLVHKLTYEDHRRHPHDCSPLLSTLRGWPSVNYFID 479

Query: 123 GNAPAHSGESGVELNLPEEGTVKVK 147
                 +G  G        GTVKVK
Sbjct: 480 ----EINGLDGT------NGTVKVK 524


>TC203800 weakly similar to UP|Q8WXA1 (Q8WXA1) Inhibitory PAS domain protein,
           partial (3%)
          Length = 860

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 48/102 (47%), Positives = 61/102 (59%)
 Frame = +3

Query: 1   MASAFFSKVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHEVTLKMFDDLIQRI 60
           MA    +K K        S+  + VCHRH+SS ATKA   EID      +K+ ++ +QR+
Sbjct: 63  MARFISNKTKTHLLRHSESAKGVIVCHRHQSSEATKAKWVEIDG-----VKLLEEHVQRV 227

Query: 61  LVKKATPDWLPFLPGYSFWVPPRPSPSSVVHLAHRFNSSDQP 102
           +VKKATPDWLPFLPG SFWVPP PSP       H+F+    P
Sbjct: 228 MVKKATPDWLPFLPGSSFWVPPPPSP-----FLHKFSIPSHP 338


>TC203904 
          Length = 911

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +2

Query: 50  LKMFDDLIQRILVKKATPDWLPFLPGYSFWVPPRPSPSSVVHLAHRFNSSDQP 102
           +++ +D + R++VKKATPDWLPFLPG SFWVPP PSP     L H F+    P
Sbjct: 209 VRLLEDHVHRLMVKKATPDWLPFLPGSSFWVPPPPSP-----LLHTFSIPSHP 352


>TC216080 weakly similar to GB|CAE76612.1|38567324|BX842641 related to
           deoxyribodipyrimidine photo-lyase {Neurospora crassa;} ,
           partial (3%)
          Length = 704

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 20/162 (12%)
 Frame = +1

Query: 92  LAHRFNSSDQ--PQDALNLESH-HGWPDPNYFLQGNAPAHSGESGVELNLPE--EGTVKV 146
           L H+ +  D   P D   L S   GWP  N+F+  N      ++ +E+N P+   GTVKV
Sbjct: 1   LVHKLSYEDHRHPHDCSPLLSTLRGWPSDNFFIDENESTDGEDTDIEINGPDGTNGTVKV 180

Query: 147 KRVLLWLSDILSVGKRIVNYQLCRSMNYEEHKTPKGIFMVQPKLM--------------E 192
           K                    L  S N    +  +G  ++ P  +              +
Sbjct: 181 K-------------------VLTFSENVAHSEDEEG*SII*PSQLLRFFYDAM*GCGEVQ 303

Query: 193 KSKNTKGKNRGGDREGQFVQMEIPADTALVVVVEL-TLLTLH 233
           K K+ K     G  +GQ VQM+IP+    V    + T LTLH
Sbjct: 304 KKKHGKKTKLSGCWKGQCVQMKIPSGYRTVGSFGI*THLTLH 429


>TC214506 similar to PIR|T01932|T01932 RNA binding protein homolog - common
           tobacco (fragment) {Nicotiana tabacum;} , partial (20%)
          Length = 662

 Score = 31.2 bits (69), Expect = 0.49
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 81  PPRPSPSSVVHLAHR--FNSSDQPQDALNLESHHGWPDPNYFLQGNAPAHSGE 131
           PP P PSS  H  H+    SSD+ +     + HH W D NY    N  AH+GE
Sbjct: 395 PPPPPPSSHHHHHHKQAAASSDEIRTVWLGDLHH-WMDENYL--HNCFAHTGE 544


>TC226414 homologue to UP|Q84V95 (Q84V95) Pyruvate decarboxylase 1  , partial
           (48%)
          Length = 1180

 Score = 30.0 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 24/40 (59%)
 Frame = -3

Query: 8   KVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHE 47
           ++ PL+R P+ SS S+  C  H+S++   ++ +   A HE
Sbjct: 797 QLAPLHRTPWQSSISLHHCGLHQSTQCNSSS*SHCTAHHE 678


>TC233749 similar to UP|Q7PTT8 (Q7PTT8) ENSANGP00000015447 (Fragment),
           partial (11%)
          Length = 495

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 13/29 (44%), Positives = 15/29 (50%)
 Frame = +2

Query: 91  HLAHRFNSSDQPQDALNLESHHGWPDPNY 119
           H AHRFNS     D+  L S H   D N+
Sbjct: 269 HTAHRFNSLTVRADSFRLRSEHAAADSNF 355


>TC226413 homologue to UP|DCP2_PEA (P51851) Pyruvate decarboxylase isozyme 2 
           (PDC) (Fragment) , partial (43%)
          Length = 735

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 8   KVKPLYRNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHE 47
           ++ PL+R P+ SS S+  C  H+S++ + ++ +   A HE
Sbjct: 387 QLAPLHRTPWQSSISLHHCGLHQSTQCSSSS*SHCMAHHE 268


>CB063339 
          Length = 380

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 26/75 (34%), Positives = 31/75 (40%)
 Frame = +2

Query: 14 RNPFPSSNSMAVCHRHRSSRATKATLTEIDAEHEVTLKMFDDLIQRILVKKATPDWLPFL 73
          +NPFP + S           AT A LTE   +   TLK        +L     P WL   
Sbjct: 20 QNPFPLTTSHV---------ATVAQLTERVPQLFTTLKTLF-----LLPLLMWPPWLNSP 157

Query: 74 PGYSFWVPPRPSPSS 88
           G+    PP PSPSS
Sbjct: 158SGFRNTPPPSPSPSS 202


>TC214811 homologue to UP|VAB2_HORVU (Q40079) Vacuolar ATP synthase subunit B
           isoform 2  (V-ATPase B subunit 2) (Vacuolar proton pump
           B subunit 2) , partial (31%)
          Length = 789

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 232 LHGLNFGFSFKPVYVEYLQRCYVES 256
           LHGL FGFS    ++ +LQR  + S
Sbjct: 363 LHGLCFGFSLASFFIVFLQRLLISS 437


>AW703994 
          Length = 411

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 17  FPSSNSMAVCHRHRSSRATKATLTEIDAEHEVT 49
           FPSSN   +C   R S  T+ T +E  ++H+VT
Sbjct: 105 FPSSNPACLCVPLRVSACTRHTHSERTSQHKVT 203


>AW831928 
          Length = 351

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
 Frame = +1

Query: 80  VPPRPSPSSVVHLAHRFNSSDQPQDALN-LESHHGWPDPNYFLQGNAP 126
           + P PS  S  H  +R   S+   + ++ ++ HH  P P +FLQ + P
Sbjct: 103 IQPPPSSPSPPHFRNRSKPSNPFHNPIH*VQVHHFLPAPLHFLQQHXP 246


>TC208780 similar to GB|AAP68270.1|31711828|BT008831 At1g53290 {Arabidopsis
           thaliana;} , partial (51%)
          Length = 969

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 18/79 (22%), Positives = 34/79 (42%)
 Frame = -1

Query: 90  VHLAHRFNSSDQPQDALNLESHHGWPDPNYFLQGNAPAHSGESGVELNLPEEGTVKVKRV 149
           ++  H+F SS   +  L  ++   W    +F   + P H G S   +++  +   +   +
Sbjct: 564 LYYTHKFYSSSDSRVGLLEQASF*WSSNIFFSGLHRPEHFGISHTAIDVAVQSVEQSS*L 385

Query: 150 LLWLSDILSVGKRIVNYQL 168
             WL+ I S+   IV   L
Sbjct: 384 FSWLTFIASIQAPIVTSSL 328


>TC212262 similar to UP|PODK_FLAPR (Q42736) Pyruvate, phosphate dikinase,
           chloroplast precursor  (Pyruvate, orthophosphate
           dikinase) , partial (17%)
          Length = 983

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 69  WLPFLPGYSFWVPPRPSPSSVVH 91
           WLPFLPG   ++P R S    +H
Sbjct: 426 WLPFLPGLLLFLPTRTSWPCFLH 358


>TC228573 
          Length = 1628

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 13/30 (43%), Positives = 18/30 (59%)
 Frame = -1

Query: 186 VQPKLMEKSKNTKGKNRGGDREGQFVQMEI 215
           V PKL  +    +G+NR GD  G+FV  +I
Sbjct: 815 VVPKLQVRQFRRQGRNRVGDIPGKFVVRKI 726


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,236,893
Number of Sequences: 63676
Number of extensions: 181924
Number of successful extensions: 1237
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of query: 257
length of database: 12,639,632
effective HSP length: 95
effective length of query: 162
effective length of database: 6,590,412
effective search space: 1067646744
effective search space used: 1067646744
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)