BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0044b.3
(242 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC228392 similar to UP|Q8LLR0 (Q8LLR0) MADS-box protein 4, parti... 397 e-111
TC229190 similar to UP|Q9SEG4 (Q9SEG4) CAGL2, partial (86%) 289 7e-79
TC222058 homologue to UP|AGL9_PETHY (Q03489) Agamous-like MADS b... 279 7e-76
TC217337 similar to UP|Q9ARF0 (Q9ARF0) MADS2 protein (Fragment),... 191 3e-49
BI970422 weakly similar to GP|5070138|gb| MADS-box protein MADS3... 119 7e-45
TC220575 similar to UP|Q8LLR1 (Q8LLR1) MADS-box protein 3, parti... 176 1e-44
TC228391 similar to UP|O65874 (O65874) MADS-box transcription fa... 174 4e-44
TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription fa... 171 3e-43
TC207360 similar to UP|Q8VWZ3 (Q8VWZ3) C-type MADS box protein, ... 159 1e-39
TC206232 homologue to UP|Q8H6F8 (Q8H6F8) MADS box protein GHMADS... 158 2e-39
AI959798 similar to GP|22091481|emb MADS box transcription facto... 157 4e-39
TC229191 homologue to UP|Q84U54 (Q84U54) MADS-RIN-like protein, ... 154 3e-38
TC222155 weakly similar to UP|O81662 (O81662) Transcription acti... 137 4e-33
TC223039 similar to UP|O65874 (O65874) MADS-box transcription fa... 136 1e-32
TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragmen... 125 2e-29
TC228632 similar to UP|Q9ZTQ9 (Q9ZTQ9) MADS box protein 26, part... 123 9e-29
TC207768 similar to UP|Q9ST53 (Q9ST53) MADS-box protein 4, parti... 114 4e-26
BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber... 114 5e-26
TC228368 similar to UP|O49173 (O49173) MADS-box protein NMH 7, p... 110 7e-25
TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, ... 108 2e-24
>TC228392 similar to UP|Q8LLR0 (Q8LLR0) MADS-box protein 4, partial (98%)
Length = 755
Score = 397 bits (1021), Expect = e-111
Identities = 201/236 (85%), Positives = 213/236 (90%), Gaps = 2/236 (0%)
Frame = +1
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGK YEFCS
Sbjct: 40 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSG 219
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLMGEDL 118
SSMLKTLERYQKCNYGAPE NV+T+EAL ELSSQQEYL+LKARYEALQRSQRNLMGEDL
Sbjct: 220 SSMLKTLERYQKCNYGAPEDNVATKEALVLELSSQQEYLRLKARYEALQRSQRNLMGEDL 399
Query: 119 GPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQL 178
GPL+SKELESLERQLDSSLKQIRS RTQFMLDQLSDLQRKEH L E+NR LRQRLE +Q+
Sbjct: 400 GPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLRQRLEEFQI 579
Query: 179 NSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGPSMNN 234
N LQLNP E++GYGRHP Q G A + P+ECEP LQIGY PDPV VVT GPS+NN
Sbjct: 580 NPLQLNPSAEEVGYGRHPXQPQGHAVFQPVECEPALQIGYHPDPV*VVTEGPSVNN 747
>TC229190 similar to UP|Q9SEG4 (Q9SEG4) CAGL2, partial (86%)
Length = 1062
Score = 289 bits (740), Expect = 7e-79
Identities = 162/229 (70%), Positives = 181/229 (78%), Gaps = 9/229 (3%)
Frame = +1
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEFCS+
Sbjct: 313 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCST 492
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
+SMLKTLERYQKC+YGA E + +E LE SS +EYLKLKAR+E+LQR+QRNL+GEDLGP
Sbjct: 493 NSMLKTLERYQKCSYGAVEVSKPGKE-LE-SSYREYLKLKARFESLQRTQRNLLGEDLGP 666
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNS 180
LN+K+LE LERQLDSSLKQ TQFMLDQL+DLQ KEHML EANRSL +LE ++NS
Sbjct: 667 LNTKDLEQLERQLDSSLKQ-----TQFMLDQLADLQNKEHMLVEANRSLTMKLE--EINS 825
Query: 181 LQ-----LNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIG----YQP 220
G + M YG A H F+ P+EC PTLQIG YQP
Sbjct: 826 RNQYRQTWEAGEQSMSYGTQNA--HSQGFFQPLECNPTLQIGSDYRYQP 966
>TC222058 homologue to UP|AGL9_PETHY (Q03489) Agamous-like MADS box protein
AGL9 homolog (Floral homeotic protein FBP2) (Floral
binding protein 2), partial (60%)
Length = 495
Score = 279 bits (714), Expect = 7e-76
Identities = 144/145 (99%), Positives = 145/145 (99%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 60 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 239
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP
Sbjct: 240 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 419
Query: 121 LNSKELESLERQLDSSLKQIRSTRT 145
L+SKELESLERQLDSSLKQIRSTRT
Sbjct: 420 LSSKELESLERQLDSSLKQIRSTRT 494
>TC217337 similar to UP|Q9ARF0 (Q9ARF0) MADS2 protein (Fragment), partial
(88%)
Length = 980
Score = 191 bits (485), Expect = 3e-49
Identities = 110/193 (56%), Positives = 134/193 (68%), Gaps = 12/193 (6%)
Frame = +2
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
+SMLKTLERYQKC+YGA E + +E LE SS +EYLKLKAR+E+LQR+QRNL+GEDLGP
Sbjct: 2 NSMLKTLERYQKCSYGAVEVSKPGKE-LE-SSYREYLKLKARFESLQRTQRNLLGEDLGP 175
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNS 180
LN+K+LE LERQLDSSLKQ+RST+TQFMLDQL+DLQ KEHML EANRSL +LE ++NS
Sbjct: 176 LNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLE--EINS 349
Query: 181 LQ-----LNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIG----YQPDPVS---VVTA 228
G + M YG A H F+ P+EC PTLQIG Y P+ T
Sbjct: 350 RNQYRQTWEAGEQSMPYGTQNA--HSQGFFQPLECNPTLQIGSDYRYIPEASEQQLAATT 523
Query: 229 GPSMNNNYMAGWL 241
N ++ GW+
Sbjct: 524 QAQQVNGFIPGWM 562
>BI970422 weakly similar to GP|5070138|gb| MADS-box protein MADS3 {Nicotiana
sylvestris}, partial (45%)
Length = 631
Score = 119 bits (297), Expect(3) = 7e-45
Identities = 54/68 (79%), Positives = 61/68 (89%)
Frame = -3
Query: 175 GYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGPSMNN 234
GYQ+N L LNPGVE+MGY R+PAQTHG+A + +ECEPTLQIGYQPDPVSVVTAGPSM +
Sbjct: 446 GYQINPLXLNPGVEEMGYXRNPAQTHGEALFQQMECEPTLQIGYQPDPVSVVTAGPSM-S 270
Query: 235 NYMAGWLP 242
NYMAGWLP
Sbjct: 269 NYMAGWLP 246
Score = 67.0 bits (162), Expect(3) = 7e-45
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = -2
Query: 136 SLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEG 175
SLKQIRS R QFMLDQLSDLQRKEH++ ANRSLRQRL G
Sbjct: 564 SLKQIRSARAQFMLDQLSDLQRKEHLVXXANRSLRQRLXG 445
Score = 32.7 bits (73), Expect(3) = 7e-45
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -1
Query: 114 MGEDLGPLNSKELESLERQLDSSLK 138
MGEDL SKELES RQLDS L+
Sbjct: 631 MGEDLXXXXSKELESXXRQLDSVLE 557
>TC220575 similar to UP|Q8LLR1 (Q8LLR1) MADS-box protein 3, partial (44%)
Length = 851
Score = 176 bits (445), Expect = 1e-44
Identities = 89/175 (50%), Positives = 127/175 (71%)
Frame = +2
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRG+V L+RI+NKINRQVTF+KRRNGLLKKA+ELSVLCDAE+AL+IFS+RGKL+++ SS
Sbjct: 158 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQY-SS 334
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
+ + + +E+Y++C + + E QE L L+ ++E+LQR+QRNL+GE+L P
Sbjct: 335 TDINRIIEKYRQCCFNMSQTGDVAEHQSEQCLYQELLILRVKHESLQRTQRNLLGEELEP 514
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEG 175
L+ KEL SLE+QLD +L Q R TQ ++ ++ +L K H L + N+ L + G
Sbjct: 515 LSMKELHSLEKQLDRTLGQARKHLTQKLISRIDELHGKVHNLEQVNKHLESQERG 679
>TC228391 similar to UP|O65874 (O65874) MADS-box transcription factor,
partial (39%)
Length = 598
Score = 174 bits (440), Expect = 4e-44
Identities = 84/109 (77%), Positives = 89/109 (81%)
Frame = +2
Query: 134 DSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNSLQLNPGVEDMGYG 193
DSSL IRS RT FMLDQLSDLQRKEH L E+NR LRQRLE +Q+N LQLNP EDMGYG
Sbjct: 11 DSSLXXIRSIRTXFMLDQLSDLQRKEHFLGESNRDLRQRLEEFQINPLQLNPSAEDMGYG 190
Query: 194 RHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGPSMNNNYMAGWLP 242
RHP Q G A + P+ECEPTLQIGY PDPVSVVT GPSM NNYMAGWLP
Sbjct: 191 RHPGQPQGHALFQPLECEPTLQIGYHPDPVSVVTEGPSM-NNYMAGWLP 334
>TC208789 similar to UP|Q9SBQ1 (Q9SBQ1) MADS box transcription factor,
partial (72%)
Length = 995
Score = 171 bits (433), Expect = 3e-43
Identities = 94/174 (54%), Positives = 125/174 (71%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRGRVELKRIENKI QVTF+KRR+GLLKKA E+SVLCDA+VALI+FS +GKL ++ +
Sbjct: 219 MGRGRVELKRIENKIFMQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLLDYSNQ 398
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
+ LERY++ +Y A V + + E+ KLKAR E LQR+QRN MGEDL
Sbjct: 399 PCTERILERYERYSY-AERQLVGDDQPPNENWVIEHEKLKARVEVLQRNQRNFMGEDLDS 575
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLE 174
LN + L+SLE+QLDS+LK IRS + Q M + +S+LQ+K+ L E N L ++++
Sbjct: 576 LNLRGLQSLEQQLDSALKHIRSRKNQAMNESISELQKKDRTLREHNNLLSKKIK 737
>TC207360 similar to UP|Q8VWZ3 (Q8VWZ3) C-type MADS box protein, partial
(88%)
Length = 1075
Score = 159 bits (402), Expect = 1e-39
Identities = 85/177 (48%), Positives = 122/177 (68%)
Frame = +2
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FS RG+LYE+ ++
Sbjct: 95 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEY-AN 271
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
+S+ T+ERY+K N A A S EA QQE KL+ + +Q R+++GE LG
Sbjct: 272 NSVRATIERYKKANAAASNAE-SVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGS 448
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQ 177
L+ KEL++LE +L+ L ++RS + + + + +Q++E L N LR ++ ++
Sbjct: 449 LSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHE 619
>TC206232 homologue to UP|Q8H6F8 (Q8H6F8) MADS box protein GHMADS-2, partial
(95%)
Length = 960
Score = 158 bits (399), Expect = 2e-39
Identities = 86/173 (49%), Positives = 120/173 (68%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S+
Sbjct: 75 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SN 251
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
+++ T+ERY+K A+ +T E QQE KL+ + + LQ S R+LMG+ L
Sbjct: 252 NNIRSTIERYKKACSDHSSASTTT-EINAQYYQQESAKLRQQIQMLQNSNRHLMGDALST 428
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRL 173
L KEL+ LE +L+ + +IRS + + +L ++ Q++E L N LR ++
Sbjct: 429 LTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKI 587
>AI959798 similar to GP|22091481|emb MADS box transcription factor {Daucus
carota subsp. sativus}, partial (39%)
Length = 409
Score = 157 bits (397), Expect = 4e-39
Identities = 84/108 (77%), Positives = 91/108 (83%), Gaps = 1/108 (0%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS
Sbjct: 90 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 269
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQ-QEYLKLKARYEALQ 107
S KTLERY +C+YGA E V + +E + QEYLKLK+R EALQ
Sbjct: 270 HSTAKTLERYHRCSYGALE--VQHQPEIETQRRYQEYLKLKSRVEALQ 407
>TC229191 homologue to UP|Q84U54 (Q84U54) MADS-RIN-like protein, partial
(32%)
Length = 558
Score = 154 bits (389), Expect = 3e-38
Identities = 77/79 (97%), Positives = 78/79 (98%)
Frame = +2
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 320 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 499
Query: 61 SSMLKTLERYQKCNYGAPE 79
SSMLKTLERYQKC+YGA E
Sbjct: 500 SSMLKTLERYQKCSYGAVE 556
>TC222155 weakly similar to UP|O81662 (O81662) Transcription activator,
partial (65%)
Length = 915
Score = 137 bits (345), Expect = 4e-33
Identities = 78/185 (42%), Positives = 115/185 (62%)
Frame = +2
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
M RG+V+LK+IE+ +RQV F+KRR+GLLKKAYELSVLCDAEVA+I+FS G+LYEF SS
Sbjct: 152 MARGKVQLKKIEDTTSRQVAFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEF-SS 328
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
S M K LERY++ P + +L + + L + E L+ S+R L+G+ +
Sbjct: 329 SDMTKILERYREHTKDVPASKFGDDYIQQL--KLDSASLAKKIELLEHSKRELLGQSVSS 502
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNS 180
+ EL+ +E QL SL+++R +TQ +Q+ L+ +E L + N L + + +S
Sbjct: 503 CSYDELKGIEEQLQISLQRVRQRKTQLYTEQIDQLRSQESNLLKENAKLSAMWQRAEKSS 682
Query: 181 LQLNP 185
Q P
Sbjct: 683 QQQWP 697
>TC223039 similar to UP|O65874 (O65874) MADS-box transcription factor,
partial (22%)
Length = 461
Score = 136 bits (342), Expect = 1e-32
Identities = 65/77 (84%), Positives = 71/77 (91%), Gaps = 1/77 (1%)
Frame = +1
Query: 167 RSLRQR-LEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSV 225
RSLRQR LEGYQ+N LQLNPGVE+MGYGRHPAQTHG+A + +ECEPTLQIGYQPDPVSV
Sbjct: 1 RSLRQRQLEGYQINPLQLNPGVEEMGYGRHPAQTHGEALFQQMECEPTLQIGYQPDPVSV 180
Query: 226 VTAGPSMNNNYMAGWLP 242
VTAGPSM +NYMAGWLP
Sbjct: 181 VTAGPSM-SNYMAGWLP 228
>TC210559 similar to UP|Q84MI1 (Q84MI1) MADS-box protein (Fragment), partial
(64%)
Length = 710
Score = 125 bits (314), Expect = 2e-29
Identities = 70/125 (56%), Positives = 90/125 (72%)
Frame = +1
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
M RG +++RIEN +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF +S
Sbjct: 340 MVRGETQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-AS 516
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
SSM T+ERY++ N A N S + ++ +QE L + E L+ S+R L+GE LG
Sbjct: 517 SSMQDTIERYRRHNRSAQTVNRSDEQNMQ-HLKQETANLMKKIELLEASKRKLLGEGLGS 693
Query: 121 LNSKE 125
+ +E
Sbjct: 694 CSLEE 708
>TC228632 similar to UP|Q9ZTQ9 (Q9ZTQ9) MADS box protein 26, partial (82%)
Length = 880
Score = 123 bits (308), Expect = 9e-29
Identities = 70/170 (41%), Positives = 109/170 (63%), Gaps = 1/170 (0%)
Frame = +1
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS- 59
MGRG++E+KRIEN NRQVT++KR+NG+LKKA E++VLCDA+V+LIIF+ GK++++ S
Sbjct: 55 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISP 234
Query: 60 SSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLG 119
S++++ LERY K + +A + E +LK +++Q R+L G+D+
Sbjct: 235 STTLIDILERYHK------TSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGDDIN 396
Query: 120 PLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSL 169
LN KEL +LE L++ L +R + +D L+R + +L E NR L
Sbjct: 397 SLNYKELMALEDALETGLVSVREKQ----MDVYRMLRRNDKILEEENREL 534
>TC207768 similar to UP|Q9ST53 (Q9ST53) MADS-box protein 4, partial (27%)
Length = 951
Score = 114 bits (285), Expect = 4e-26
Identities = 64/166 (38%), Positives = 104/166 (62%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MG+ +VE+KRIENK RQ+TF+KRRNGL+KKA ELS+LCDA+VAL+IFS+ GKLYE C+
Sbjct: 111 MGKKKVEIKRIENKSTRQITFSKRRNGLMKKARELSILCDAKVALLIFSSTGKLYELCNG 290
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGP 120
S+ + +++Y + GA + ++E E + + Q +R+ +L
Sbjct: 291 DSLAEVVQQYWD-HLGASGTDTKSQELC-----FEIADIWSGSAFSQMIKRHFGVSELEH 452
Query: 121 LNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEAN 166
L+ +L LE+ ++L +IRS + + M++ + +L++K L + N
Sbjct: 453 LSVSDLMELEKLTHAALSRIRSAKMRLMMESVVNLKKKIEALEKTN 590
>BU761215 homologue to PIR|T08039|T08 MADS-box protein - cucumber, partial
(42%)
Length = 450
Score = 114 bits (284), Expect = 5e-26
Identities = 62/100 (62%), Positives = 78/100 (78%)
Frame = +1
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
MGRG++E+KRIEN NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ ++
Sbjct: 142 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-AN 318
Query: 61 SSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLK 100
+S+ T+ERY+K + + A S EA QQE KL+
Sbjct: 319 NSVKATIERYKKASSDSSGAG-SASEANAQFYQQEADKLR 435
>TC228368 similar to UP|O49173 (O49173) MADS-box protein NMH 7, partial (97%)
Length = 1042
Score = 110 bits (274), Expect = 7e-25
Identities = 63/175 (36%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Frame = +3
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
M RG++++KRIEN NRQVT++KRRNGL KKA EL+VLCDA+V++I+FS+ GKL+++ S
Sbjct: 81 MARGKIQIKRIENNTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHQYISP 260
Query: 61 SSMLKT-LERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLG 119
S+ K ++YQ V + + Q+ KLK L++ R MG+ L
Sbjct: 261 STSTKQFFDQYQM------TLGVDLWNSHYENMQENLKKLKEVNRNLRKEIRQRMGDCLN 422
Query: 120 PLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLE 174
L ++L+ LE ++D + K +R + + + +Q+ ++K + E + L + L+
Sbjct: 423 ELGMEDLKLLEEEMDKAAKVVRERKYKVITNQIDTQRKKFNNEKEVHNRLLRDLD 587
>TC234766 homologue to UP|Q7Y137 (Q7Y137) MADS-box protein PTM5, partial
(33%)
Length = 490
Score = 108 bits (271), Expect = 2e-24
Identities = 58/83 (69%), Positives = 68/83 (81%)
Frame = +2
Query: 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
M RG+ +L+RIEN +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF +S
Sbjct: 239 MVRGKTQLRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-AS 415
Query: 61 SSMLKTLERYQKCNYGAPEANVS 83
SSM T+ERY++ N A N S
Sbjct: 416 SSMQDTIERYRRHNRSAQTVNRS 484
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,082,899
Number of Sequences: 63676
Number of extensions: 109518
Number of successful extensions: 522
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of query: 242
length of database: 12,639,632
effective HSP length: 95
effective length of query: 147
effective length of database: 6,590,412
effective search space: 968790564
effective search space used: 968790564
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0044b.3