BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0044b.1
(221 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW308995 30 1.1
TC217041 similar to UP|Q6IV45 (Q6IV45) Ferulate 5-hydroxylase, p... 30 1.1
TC205631 weakly similar to UP|CBR_DUNBA (P27516) Carotene biosyn... 29 1.5
TC235147 weakly similar to UP|Q6NAC8 (Q6NAC8) Possible cobalamin... 29 1.5
TC228785 weakly similar to GB|AAP42749.1|30984572|BT008736 At3g5... 29 1.9
BI973784 similar to GP|17046555|gb|A vpr protein {Human immunode... 28 3.3
BU091715 28 3.3
BU084691 28 4.2
TC225572 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp pro... 28 4.2
TC219243 similar to UP|Q9XFW4 (Q9XFW4) Acyl-CoA:1-acylglycerol-3... 28 4.2
TC211930 similar to UP|Q9SWB3 (Q9SWB3) Seed maturation protein P... 28 4.2
TC216576 similar to UP|Q84KK6 (Q84KK6) S-adenosyl-L-methionine: ... 28 4.2
BF424859 28 4.2
TC214758 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-pho... 27 5.5
TC213423 similar to UP|C933_SOYBN (O81973) Cytochrome P450 93A3 ... 27 5.5
AW234834 27 5.5
TC233904 27 5.5
TC218199 similar to UP|Q9LXP3 (Q9LXP3) Protein kinase-like prote... 27 7.2
TC205694 similar to PIR|F86282|F86282 protein F10B6.30 [imported... 27 7.2
TC228520 weakly similar to UP|MMT1_WOLBI (Q9SWR3) Methionine S-m... 27 7.2
>AW308995
Length = 458
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = -2
Query: 159 MPRTKNLNLPPANRSSHGSRIPPRHRASPTHSQCVF 194
MP +N+N RS H +P +HR PTH +F
Sbjct: 430 MPXKQNIN-----RSPHWIVVPKQHRIDPTHFNALF 338
>TC217041 similar to UP|Q6IV45 (Q6IV45) Ferulate 5-hydroxylase, partial (92%)
Length = 1857
Score = 29.6 bits (65), Expect = 1.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 170 ANRSSHGSRIPPRHRASPTHSQCVFVWHSEH 200
ANR H S PPR R TH C F+ H
Sbjct: 957 ANRPIHCSTSPPRCRTPATHPPCPFLHQQFH 865
>TC205631 weakly similar to UP|CBR_DUNBA (P27516) Carotene
biosynthesis-related protein CBR, chloroplast precursor,
partial (17%)
Length = 1088
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 22 SDAQLNIIPKELQISNRQYVLCFTCSEFNIFLCTRSSILKERS 64
S N++P + S++ ++LC +FLC R S+L+ RS
Sbjct: 64 SSMAANLLPLSISCSSKTHILCLPSPPKPLFLC-RHSLLRYRS 189
>TC235147 weakly similar to UP|Q6NAC8 (Q6NAC8) Possible cobalamin
(5`-phosphate) synthase, partial (9%)
Length = 388
Score = 29.3 bits (64), Expect = 1.5
Identities = 14/46 (30%), Positives = 23/46 (49%)
Frame = +2
Query: 76 RRKHNGDPANTATPQPSGVAATPIATFYCQPPKILPETQVRYATRP 121
+R P++ +TP PS AA + +PP LP +++ T P
Sbjct: 2 QRSRTSVPSSASTPTPSPSAALSSSLSNARPPLALPRSRLSARTSP 139
>TC228785 weakly similar to GB|AAP42749.1|30984572|BT008736 At3g52060
{Arabidopsis thaliana;} , partial (65%)
Length = 860
Score = 28.9 bits (63), Expect = 1.9
Identities = 15/29 (51%), Positives = 19/29 (64%)
Frame = +1
Query: 160 PRTKNLNLPPANRSSHGSRIPPRHRASPT 188
P+T NL LPPA+ S+ S P R+SPT
Sbjct: 400 PKTPNLLLPPASASA--SNTSPSSRSSPT 480
>BI973784 similar to GP|17046555|gb|A vpr protein {Human immunodeficiency
virus type 1} [Human immunodeficiency virus 1], partial
(18%)
Length = 421
Score = 28.1 bits (61), Expect = 3.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 166 NLPPANRSSHGSRIPPRHRASP 187
N P + HG R P RH+ASP
Sbjct: 240 NFSPPSHQKHGHRNPRRHQASP 305
>BU091715
Length = 417
Score = 28.1 bits (61), Expect = 3.3
Identities = 24/93 (25%), Positives = 37/93 (38%), Gaps = 3/93 (3%)
Frame = +2
Query: 103 YCQPPKILPETQVRYATRPIMLWFLSL---FVDASVSQLEGVCSENTHFKGARDTHLKDM 159
+ P + P+ Y P L FL L FV + S + + T K TH D
Sbjct: 8 FLSPSLLFPQ----YNNPPFFLPFLLL*THFVSHAPSLINSFMAMGTVHKWL--THFTDT 169
Query: 160 PRTKNLNLPPANRSSHGSRIPPRHRASPTHSQC 192
+ N+ +PPA++ HR P + +C
Sbjct: 170 KKCNNILVPPASKEQQSIYFLQYHR--PVYQRC 262
>BU084691
Length = 421
Score = 27.7 bits (60), Expect = 4.2
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 1/52 (1%)
Frame = +1
Query: 26 LNIIPKELQISNRQYVLCFTCSEFNIFLCTRSSILKERSLRIHVIY-RMNQR 76
LNI P+ + S R+ C + S I LC S + + L +H Y +M+ R
Sbjct: 199 LNIYPQPIN*SLRKVQGCISLSRLTIMLCLTSRVNPQA*LLVHWPY*KMHMR 354
>TC225572 homologue to UP|CLPA_PEA (P35100) ATP-dependent Clp protease
ATP-binding subunit clpA homolog, chloroplast precursor
, partial (18%)
Length = 511
Score = 27.7 bits (60), Expect = 4.2
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = -2
Query: 25 QLNIIPKELQISNRQYVLCFTCSEFNIFLCTR 56
QL + P+E Q RQYV+C S +++ L R
Sbjct: 489 QLRLSPQEYQSRRRQYVVCQLQSPWDLHLLPR 394
>TC219243 similar to UP|Q9XFW4 (Q9XFW4) Acyl-CoA:1-acylglycerol-3-phosphate
acyltransferase , partial (49%)
Length = 671
Score = 27.7 bits (60), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (49%)
Frame = -2
Query: 83 PANTATPQPSGVAATPIATFYCQPPKILPE 112
PA A P P A T +T QP ILPE
Sbjct: 250 PARAAPPPPCSSAGTDSSTPAAQPRSILPE 161
>TC211930 similar to UP|Q9SWB3 (Q9SWB3) Seed maturation protein PM39
(Fragment), partial (47%)
Length = 650
Score = 27.7 bits (60), Expect = 4.2
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -2
Query: 45 TCSEFNIFLCTRSSILKERSLRIHVIYRMNQRRKHNGDPANTATP-----QPSGVAATPI 99
T +E + FLC S I ER+L ++ + P + +TP P + TP+
Sbjct: 604 TSTEGSSFLCRVSDITSERALSSSPRLSLSTK*SFTETPLSCSTPILLV*VPETLDFTPL 425
Query: 100 ATFYCQPPKILPETQVRYATR 120
T P PET ++ R
Sbjct: 424 PT-----PASFPETGASFSVR 377
>TC216576 similar to UP|Q84KK6 (Q84KK6) S-adenosyl-L-methionine:
2,7,4'-trihydroxyisoflavanone 4'-O-methyltransferase,
complete
Length = 1354
Score = 27.7 bits (60), Expect = 4.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 57 SSILKERSLRIHVIYRMNQRRKHNGDPANTATPQPSGVAATPIATFYCQPPKIL 110
SS LK ++ V+ R + HNG A T P +GV + PP L
Sbjct: 223 SSALKLHPSKVSVLQRFLRLLTHNGFFAKTILPSKNGVEGGEEIAYALTPPSKL 384
>BF424859
Length = 340
Score = 27.7 bits (60), Expect = 4.2
Identities = 18/55 (32%), Positives = 25/55 (44%), Gaps = 10/55 (18%)
Frame = +1
Query: 162 TKNLNLPPANRSS-------HGSRIPPRHRASPTHSQCV---FVWHSEHEVQTAT 206
T+ L +P SS H +PP HR H +V H+EH+V+ AT
Sbjct: 124 TQTLRIPNPYVSSPLDMGQFHAPIMPPLHRLPIAHDSVAHPAYVAHAEHDVRQAT 288
>TC214758 similar to UP|RPIA_ARATH (Q9ZU38) Probable-ribose 5-phosphate
isomerase (Phosphoriboisomerase) , partial (79%)
Length = 836
Score = 27.3 bits (59), Expect = 5.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 152 RDTHLKDMPRTKNLNLPPANRSSHGSRIPPRHRA 185
R+ HL PRT L P R SR PPRHR+
Sbjct: 325 RNPHLHKNPRTSPLPRDPPLR----SRRPPRHRS 414
>TC213423 similar to UP|C933_SOYBN (O81973) Cytochrome P450 93A3 (P450 CP5)
, partial (21%)
Length = 514
Score = 27.3 bits (59), Expect = 5.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 168 PPANRSSHGSRIPPRHRASPTH 189
PP S G +PP HR P+H
Sbjct: 139 PPQASPSTGPTVPPHHRPPPSH 204
>AW234834
Length = 421
Score = 27.3 bits (59), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (59%)
Frame = +1
Query: 168 PPANRSSHGSRIPPRHRASPTHSQCVFVWH 197
PP + + S +PP HR S ++S +F+ H
Sbjct: 148 PPLDFEACRSCLPPHHRRSHSYSPLIFLCH 237
>TC233904
Length = 419
Score = 27.3 bits (59), Expect = 5.5
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 152 RDTHLKDMPRTKNLNLPPANRSSHGSRIPPRHRASPTHSQCVFVWHSEHEVQTAT 206
R HL + +L+ PP + +S PP+ +PT S W H + ++T
Sbjct: 42 RHHHLLCSSSSSSLSSPPRHPASPA---PPKSSPTPTKSSSPTAWTFPHSIPSST 197
>TC218199 similar to UP|Q9LXP3 (Q9LXP3) Protein kinase-like protein, partial
(8%)
Length = 987
Score = 26.9 bits (58), Expect = 7.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 142 CSENTHFKGARDTHLKDMPRTKNLNLPPANRSS 174
CS+ K +++ D P TKN N PP +SS
Sbjct: 690 CSDAASLK----SNISDQPETKNSNTPPILKSS 776
>TC205694 similar to PIR|F86282|F86282 protein F10B6.30 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(50%)
Length = 962
Score = 26.9 bits (58), Expect = 7.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 75 QRRKHNGDPANTATPQPSGVAATPIATFYCQPPKILPETQVRYATRP 121
+ + H TATP S +AATP +T C P L T +R + P
Sbjct: 134 ETKAHRLQATATATPISSALAATPRSTRKCVSPPSL-ATPMRCSRTP 271
>TC228520 weakly similar to UP|MMT1_WOLBI (Q9SWR3) Methionine
S-methyltransferase (AdoMet:Met S-methyltransferase) ,
partial (11%)
Length = 940
Score = 26.9 bits (58), Expect = 7.2
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +2
Query: 99 IATFYCQPPKILPETQVRYATRPIMLWFLSLFVDASVSQLEGVCSENTHFKGARDTHLKD 158
+ TFY P P T VRYAT+ ++ + S L E T R LK+
Sbjct: 254 VDTFYSYPGLSKPHTTVRYATKKLL-----ELKEQKPSNLSDAIVEQTQILKTRSRCLKE 418
Query: 159 M 159
+
Sbjct: 419 V 421
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.323 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,770,572
Number of Sequences: 63676
Number of extensions: 198279
Number of successful extensions: 1364
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1363
length of query: 221
length of database: 12,639,632
effective HSP length: 94
effective length of query: 127
effective length of database: 6,654,088
effective search space: 845069176
effective search space used: 845069176
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0044b.1