BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0043b.5
(298 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC229983 416 e-117
TC203576 similar to UP|HSP2_HUMAN (P04554) Sperm histone P2 prec... 409 e-114
TC203783 homologue to GB|AAM65487.1|21593520|AY087939 chlorophyl... 292 1e-79
TC217505 similar to UP|Q8VZF6 (Q8VZF6) AT5g45560/MFC19_23, parti... 193 7e-50
TC228798 162 2e-40
TC232090 138 3e-33
BI316740 80 1e-15
BU083329 similar to GP|16930705|gb| AT5g35180/T25C13_60 {Arabido... 74 6e-14
TC220313 similar to UP|Q8LPT2 (Q8LPT2) At1g10410/F14N23_31, part... 56 2e-08
TC217504 similar to UP|Q8VZF6 (Q8VZF6) AT5g45560/MFC19_23, parti... 45 3e-05
TC222321 45 4e-05
BE805238 45 4e-05
TC213333 similar to UP|Q9LMG0 (Q9LMG0) F16A14.19, partial (27%) 42 4e-04
TC228799 40 0.001
TC230848 similar to UP|Q8LPT2 (Q8LPT2) At1g10410/F14N23_31, part... 40 0.002
BU548931 similar to GP|6520233|dbj CW14 {Arabidopsis thaliana}, ... 40 0.002
TC222655 similar to UP|Q9LMG0 (Q9LMG0) F16A14.19, partial (28%) 30 1.7
TC214339 similar to GB|CAA71502.1|2769566|ATCTPP chloroplast thy... 28 3.8
TC233601 similar to UP|Q7XHJ1 (Q7XHJ1) Pheromone receptor-like p... 28 6.5
TC214851 similar to UP|Q84XA0 (Q84XA0) Early tobacco anther 1, p... 27 8.5
>TC229983
Length = 984
Score = 416 bits (1069), Expect = e-117
Identities = 213/293 (72%), Positives = 246/293 (83%), Gaps = 14/293 (4%)
Frame = +3
Query: 15 IMCPQTNTHRSSGETV-----DWISDAINGGSLRHVDLHTGTNGWASPPGDLFSLRSTNY 69
++ P HRSSG + DWIS++INGGSLR VDL++GTNGWASPPG +FSLRS +Y
Sbjct: 12 LLLPPPKPHRSSGNSPGDSIPDWISESINGGSLRRVDLNSGTNGWASPPGSVFSLRSESY 191
Query: 70 FTKRQKSPAGNYLLSPAGMDWLKSTAKLENVLARADNRVSNALR-------TRKSFIFAV 122
F RQKSPAG+YLLSPAGMDWLKS AKL++VL+RADNRV +ALR + KSF+FAV
Sbjct: 192 FQNRQKSPAGDYLLSPAGMDWLKSAAKLDHVLSRADNRVMHALRRCQTLGRSLKSFVFAV 371
Query: 123 NLQIPGGKDHHSAVFYFATEEP--IQPGSLLDRFVNGDDGFRNQRFKLVNRIVKGPWIVK 180
NLQIPG K+HHSAVFYFATEEP ++ GSLL+RFV+GDD FRNQRFKLVNRI KGPWIVK
Sbjct: 372 NLQIPGAKEHHSAVFYFATEEPDPVRTGSLLNRFVHGDDAFRNQRFKLVNRIAKGPWIVK 551
Query: 181 KAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGSSAIANAILHLALGYVTAVTIDMGFVI 240
KAVG++SACLLGKAL C Y++GSNYLEIDVDIGSSAIANAILHLALG VT VTIDMGFV+
Sbjct: 552 KAVGSHSACLLGKALNCAYYKGSNYLEIDVDIGSSAIANAILHLALGCVTTVTIDMGFVV 731
Query: 241 EAQAEEELPERLIGAVRVCQMEMSSATVVDSLYAPPVARGSGLAKVNCQEDDD 293
EAQAE+ELPERLIGA+RVCQMEM+SATVV++L+ P RG G AKVN + D
Sbjct: 732 EAQAEDELPERLIGAIRVCQMEMASATVVEALHVP---RGVGWAKVNHHKSAD 881
>TC203576 similar to UP|HSP2_HUMAN (P04554) Sperm histone P2 precursor
(Protamine P2) (HP2) (Protamine P3) (HP3) (Protamine P4)
(HP4) (Basic nuclear protein HPS1) (Basic nuclear
protein HPS2) (HPI1) (HPI2), partial (16%)
Length = 954
Score = 409 bits (1050), Expect = e-114
Identities = 211/275 (76%), Positives = 232/275 (83%), Gaps = 7/275 (2%)
Frame = +2
Query: 26 SGETVDWISDAINGGSLRHVDLHTGTNGWASPPGDLFSLRSTNYFTKRQKSPAGNYLLSP 85
S T W SDAI+GG LR VDL +GTNGWASPPGDLF LRS NYFTKRQKSPAG+YLLSP
Sbjct: 107 SPATAHWTSDAIHGGPLRRVDLDSGTNGWASPPGDLFLLRSPNYFTKRQKSPAGDYLLSP 286
Query: 86 AGMDWLKSTAKLENVLARADNRVSNALR-------TRKSFIFAVNLQIPGGKDHHSAVFY 138
+GMDWLKS +KL+NVL+R DNR++ ALR + KSFIFAVNLQ+PG K+HHSAVFY
Sbjct: 287 SGMDWLKSQSKLDNVLSRPDNRMAQALRQAQAQGKSLKSFIFAVNLQVPG-KEHHSAVFY 463
Query: 139 FATEEPIQPGSLLDRFVNGDDGFRNQRFKLVNRIVKGPWIVKKAVGNYSACLLGKALTCN 198
F+T+EPI GSLL RF+ GDD FRNQRFKLVNRIVKGPWIVKKAVGNYSACLLGKALTCN
Sbjct: 464 FSTDEPITSGSLLSRFIEGDDAFRNQRFKLVNRIVKGPWIVKKAVGNYSACLLGKALTCN 643
Query: 199 YHRGSNYLEIDVDIGSSAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRV 258
YHRG NY EIDVDIGSSAIANAIL LALGYVT+VTIDMGFV+EAQ+EEELPERLIGAVRV
Sbjct: 644 YHRGPNYFEIDVDIGSSAIANAILRLALGYVTSVTIDMGFVVEAQSEEELPERLIGAVRV 823
Query: 259 CQMEMSSATVVDSLYAPPVARGSGLAKVNCQEDDD 293
CQMEMS+ATVVD AP RG+ KVN +D
Sbjct: 824 CQMEMSAATVVD---APNAPRGN---KVNHLSGND 910
>TC203783 homologue to GB|AAM65487.1|21593520|AY087939 chlorophyll
a/b-binding protein-like {Arabidopsis thaliana;} ,
partial (34%)
Length = 1067
Score = 292 bits (748), Expect = 1e-79
Identities = 148/194 (76%), Positives = 160/194 (82%), Gaps = 7/194 (3%)
Frame = +3
Query: 14 LIMCPQTNTHRSSGETVDWISDAINGGSLRHVDLHTGTNGWASPPGDLFSLRSTNYFTKR 73
L M P T S T W SDAI+GGSLR VDL +GTNGWASPPGDLF LRS+NYFTKR
Sbjct: 504 LAMSPTT-----SSSTAHWTSDAIHGGSLRRVDLDSGTNGWASPPGDLFLLRSSNYFTKR 668
Query: 74 QKSPAGNYLLSPAGMDWLKSTAKLENVLARADNRVSNALR-------TRKSFIFAVNLQI 126
QKSPAG+YLLSPAGMDWLKS +KLENVL+RADNRV ALR + KSFIFAVNLQ+
Sbjct: 669 QKSPAGDYLLSPAGMDWLKSQSKLENVLSRADNRVGQALRQAQAQGKSLKSFIFAVNLQV 848
Query: 127 PGGKDHHSAVFYFATEEPIQPGSLLDRFVNGDDGFRNQRFKLVNRIVKGPWIVKKAVGNY 186
P GK+HHSAVFYF+T+EPI GSLL RF+ GDD FRNQRFKLVNRIVKGPWIVKKAVGNY
Sbjct: 849 P-GKEHHSAVFYFSTDEPIPSGSLLSRFIEGDDAFRNQRFKLVNRIVKGPWIVKKAVGNY 1025
Query: 187 SACLLGKALTCNYH 200
SACL GKALTCNYH
Sbjct: 1026SACLSGKALTCNYH 1067
>TC217505 similar to UP|Q8VZF6 (Q8VZF6) AT5g45560/MFC19_23, partial (27%)
Length = 1093
Score = 193 bits (491), Expect = 7e-50
Identities = 99/206 (48%), Positives = 140/206 (67%), Gaps = 1/206 (0%)
Frame = +1
Query: 64 LRSTNY-FTKRQKSPAGNYLLSPAGMDWLKSTAKLENVLARADNRVSNALRTRKSFIFAV 122
+RS +Y + K +K PAG ++L +DW K + ++++V AR + + F +
Sbjct: 1 VRSKHYCYDKTKKVPAGKHMLDLVAVDWFKDSKRMDHV-ARRHGCAAQVASEKGFFSIVI 177
Query: 123 NLQIPGGKDHHSAVFYFATEEPIQPGSLLDRFVNGDDGFRNQRFKLVNRIVKGPWIVKKA 182
NLQ+P H+S VFYF T+E + GSLL RFV+GDD FRN RFKL+ + KG WIV+++
Sbjct: 178 NLQVPAST-HYSMVFYFVTKELVS-GSLLHRFVDGDDEFRNSRFKLIPSVPKGSWIVRQS 351
Query: 183 VGNYSACLLGKALTCNYHRGSNYLEIDVDIGSSAIANAILHLALGYVTAVTIDMGFVIEA 242
VG+ + CLLGKA+ CNY RG YLEIDVDIGSS +AN +L L +G +T + +DM F+++A
Sbjct: 352 VGS-TPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQA 528
Query: 243 QAEEELPERLIGAVRVCQMEMSSATV 268
+ELPERLIGAVR+ +E+ SA V
Sbjct: 529 NTPDELPERLIGAVRISHLELKSAIV 606
>TC228798
Length = 1120
Score = 162 bits (410), Expect = 2e-40
Identities = 85/206 (41%), Positives = 123/206 (59%), Gaps = 1/206 (0%)
Frame = +1
Query: 62 FSLRSTNYFTKRQKSPAGNYLLSPAGMDWLKSTAKLENVLARADNRVSN-ALRTRKSFIF 120
F +R NY R K A L+ DW++S + +++ R + V A + F F
Sbjct: 244 FLIRGENYLEDRLKVKAKGTLMKMVAADWVRSDKREDDLGGRPGSIVQKYAAQGGPEFFF 423
Query: 121 AVNLQIPGGKDHHSAVFYFATEEPIQPGSLLDRFVNGDDGFRNQRFKLVNRIVKGPWIVK 180
VN+Q+PG + A++Y P++ LL+ F+ GDD FRN RFKL+ I KG WIVK
Sbjct: 424 IVNIQVPGSTTYSLALYYMMNT-PVEDAPLLESFIKGDDAFRNSRFKLIPYISKGSWIVK 600
Query: 181 KAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGSSAIANAILHLALGYVTAVTIDMGFVI 240
++VG ACL+G+AL NY +GSNYLE+ VDIGSS +A ++ L LGY+ + I+M F+I
Sbjct: 601 QSVGK-KACLVGQALEINYFQGSNYLELGVDIGSSTVARGVVSLVLGYLNHLVIEMAFLI 777
Query: 241 EAQAEEELPERLIGAVRVCQMEMSSA 266
+ EELPE L+G R+ ++ S A
Sbjct: 778 QGNTREELPEFLLGTCRLNHLDASKA 855
>TC232090
Length = 662
Score = 138 bits (348), Expect = 3e-33
Identities = 58/114 (50%), Positives = 88/114 (76%)
Frame = +2
Query: 157 GDDGFRNQRFKLVNRIVKGPWIVKKAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGSSA 216
G + FRN R KL+ IVKGPWIV+KAVG + C++G+ L+C Y G N++E+D+DIGSS
Sbjct: 8 GGNAFRNSRLKLIANIVKGPWIVRKAVGEQAICIIGRDLSCKYCTGENFIEVDIDIGSSM 187
Query: 217 IANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRVCQMEMSSATVVD 270
+A+AI+HLA GY++ +T+D+ F+IE+QAE ELPE++ GA R +++ +SA ++
Sbjct: 188 VASAIVHLAFGYISTLTVDLAFLIESQAESELPEKIFGAFRFSELDPASARTIE 349
>BI316740
Length = 301
Score = 79.7 bits (195), Expect = 1e-15
Identities = 40/62 (64%), Positives = 43/62 (68%)
Frame = +3
Query: 26 SGETVDWISDAINGGSLRHVDLHTGTNGWASPPGDLFSLRSTNYFTKRQKSPAGNYLLSP 85
S T W SDAI+GG LR VDL +GTNGWASPPGDLF LRS T PAG YLLSP
Sbjct: 114 SPATAHWTSDAIHGGPLRRVDLDSGTNGWASPPGDLFLLRSPTSPTGGGGGPAGYYLLSP 293
Query: 86 AG 87
+G
Sbjct: 294 SG 299
>BU083329 similar to GP|16930705|gb| AT5g35180/T25C13_60 {Arabidopsis
thaliana}, partial (8%)
Length = 421
Score = 74.3 bits (181), Expect = 6e-14
Identities = 37/70 (52%), Positives = 50/70 (70%)
Frame = +1
Query: 124 LQIPGGKDHHSAVFYFATEEPIQPGSLLDRFVNGDDGFRNQRFKLVNRIVKGPWIVKKAV 183
+Q+P K ++S V Y+A + PI SLL +FV+G D FR+ RFKL+ IV+G W+VK+AV
Sbjct: 217 IQVPA-KPNYSLVLYYAADRPINKNSLLAKFVDGSDAFRDSRFKLIPSIVEGYWMVKRAV 393
Query: 184 GNYSACLLGK 193
G ACLLGK
Sbjct: 394 GT-KACLLGK 420
>TC220313 similar to UP|Q8LPT2 (Q8LPT2) At1g10410/F14N23_31, partial (65%)
Length = 1226
Score = 55.8 bits (133), Expect = 2e-08
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 34/239 (14%)
Frame = +3
Query: 54 WASPPGDLFSLRSTNYFTKRQKSPAGNY-LLSPAGMDWLKSTAKLENVLARADNRVSNAL 112
W+ F +R NYF ++K A NY P G+D S K++++ + V ++
Sbjct: 324 WSQIDASTFKVRGVNYFKDKKKDFAPNYSAYYPFGVDIFLSPRKVDHIARFVELPVMSS- 500
Query: 113 RTRKSFIFAVNLQIP--------GGKDHH--SAVFYFATEE--------PIQPG--SLLD 152
+ I VN+Q+P G D S V YF E P Q L+D
Sbjct: 501 SVKFPPILVVNVQVPLYPATLFQGETDGEGMSIVLYFKLSESYSKELPPPFQESIRRLMD 680
Query: 153 RFVNGDDGFR-------NQRFKLVNRIVKGPWI-----VKKAVGNYSACLLGKALTCNYH 200
V GF +R K++ R+V + +K + Y+ + ++
Sbjct: 681 DEVEKVKGFPVDTIAPFRERLKILGRVVNLEDLHLSAAERKLMQAYNEKPVLSRPQHEFY 860
Query: 201 RGSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRV 258
G NY EID+D+ S I+ L + T+D+G I+ +EELPE ++ +R+
Sbjct: 861 TGENYFEIDLDMHRFSYISRKGFEAFLERLKVCTLDVGLTIQGNKQEELPENVLCCIRL 1037
>TC217504 similar to UP|Q8VZF6 (Q8VZF6) AT5g45560/MFC19_23, partial (26%)
Length = 967
Score = 45.4 bits (106), Expect = 3e-05
Identities = 24/87 (27%), Positives = 43/87 (48%)
Frame = +2
Query: 40 GSLRHVDLHTGTNGWASPPGDLFSLRSTNYFTKRQKSPAGNYLLSPAGMDWLKSTAKLEN 99
G+LR D + W G+ F +RS +Y ++ K PAG ++L +DW + ++++
Sbjct: 518 GNLRRDDRDNARDCWKISDGNNFKVRSKHYCYEKTKVPAGKHMLDLVAVDWFIDSKRMDH 697
Query: 100 VLARADNRVSNALRTRKSFIFAVNLQI 126
V AR + + F +NLQ+
Sbjct: 698 V-ARRHGCAAQVASEKGFFSIVLNLQV 775
>TC222321
Length = 686
Score = 45.1 bits (105), Expect = 4e-05
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +3
Query: 180 KKAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGF 238
KK V Y+ + N+++G NY EID+DI S I+ L + +D+G
Sbjct: 405 KKLVNAYNGKPVLSRPQHNFYKGPNYFEIDLDIHRFSYISRKGLDAFPDRLKDGILDLGL 584
Query: 239 VIEAQAEEELPERLIGAVRVCQMEMS 264
I+AQ +EELPE+++ +R+ +++++
Sbjct: 585 TIQAQKQEELPEKVLCCLRLNKIDLN 662
>BE805238
Length = 417
Score = 45.1 bits (105), Expect = 4e-05
Identities = 23/77 (29%), Positives = 46/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 199 YHRGSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVR 257
+ +G NY EID+DI S I+ LH V +++G I+AQ +EELPE+++ ++
Sbjct: 4 FFKGPNYFEIDLDIHRFSYISRKALHSLRDRTKNVVLNLGLTIQAQKQEELPEQVLCCLQ 183
Query: 258 VCQMEMSSATVVDSLYA 274
+ +++ ++ + ++ A
Sbjct: 184 LNKIDFANDGQIPTIVA 234
>TC213333 similar to UP|Q9LMG0 (Q9LMG0) F16A14.19, partial (27%)
Length = 641
Score = 41.6 bits (96), Expect = 4e-04
Identities = 26/84 (30%), Positives = 45/84 (52%), Gaps = 1/84 (1%)
Frame = +1
Query: 180 KKAVGNYSACLLGKALTCNYHRGSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGF 238
KK + Y+ + +++G NY EID+DI S I+ L V +D+G
Sbjct: 169 KKLINAYNGKPVLSRPQHEFYKGPNYFEIDLDIHRFSYISRKGLDSLRDRVKHGILDVGL 348
Query: 239 VIEAQAEEELPERLIGAVRVCQME 262
I+AQ +EELPE ++ +R+ +++
Sbjct: 349 TIQAQKQEELPEEVLCCLRLNKID 420
>TC228799
Length = 464
Score = 40.4 bits (93), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (61%)
Frame = +3
Query: 224 LALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRVCQMEMSSA 266
L LGY+ + I+M F+I+ EELPE L+G R+ ++ S A
Sbjct: 21 LVLGYLNHLVIEMAFLIQGNTREELPEFLLGTCRLNHLDASKA 149
>TC230848 similar to UP|Q8LPT2 (Q8LPT2) At1g10410/F14N23_31, partial (24%)
Length = 1400
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/61 (32%), Positives = 34/61 (54%), Gaps = 1/61 (1%)
Frame = +1
Query: 199 YHRGSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVR 257
++ G NY EID+D+ S I+ L + T+D+G I+ +EELPE ++ +R
Sbjct: 709 FYTGENYFEIDLDMHRFSYISRKGFEAFLERLKVCTLDVGLTIQGNKQEELPENVLCCIR 888
Query: 258 V 258
+
Sbjct: 889 L 891
>BU548931 similar to GP|6520233|dbj CW14 {Arabidopsis thaliana}, partial
(23%)
Length = 498
Score = 39.7 bits (91), Expect = 0.002
Identities = 22/65 (33%), Positives = 36/65 (54%), Gaps = 1/65 (1%)
Frame = -1
Query: 202 GSNYLEIDVDIGS-SAIANAILHLALGYVTAVTIDMGFVIEAQAEEELPERLIGAVRVCQ 260
G NYLEID+D+ S IA + + +D G I+ E+LPE L+ A+R+ +
Sbjct: 348 GENYLEIDLDVHRFSYIARKGFEGFIERLKLCNLDFGLTIQGNKAEDLPEHLLCAIRLNK 169
Query: 261 MEMSS 265
++ S+
Sbjct: 168 LDYSN 154
>TC222655 similar to UP|Q9LMG0 (Q9LMG0) F16A14.19, partial (28%)
Length = 578
Score = 29.6 bits (65), Expect = 1.7
Identities = 19/75 (25%), Positives = 33/75 (43%), Gaps = 1/75 (1%)
Frame = +3
Query: 54 WASPPGDLFSLRSTNYFTKRQKSPAGNYL-LSPAGMDWLKSTAKLENVLARADNRVSNAL 112
W++ +F+LR N+F +QK PA P G+D K+ ++ + +
Sbjct: 72 WSAISPSVFNLRGENFFRDKQKCPAPESCPYIPIGVDLFACPKKISHIAKHLELPLVKE- 248
Query: 113 RTRKSFIFAVNLQIP 127
F+ VN+Q P
Sbjct: 249 NESVPFLLIVNIQKP 293
>TC214339 similar to GB|CAA71502.1|2769566|ATCTPP chloroplast thylakoidal
processing peptidase {Arabidopsis thaliana;} , partial
(55%)
Length = 1836
Score = 28.5 bits (62), Expect = 3.8
Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 2/45 (4%)
Frame = -3
Query: 7 FSTVRTLLIMCPQTNTHRSSGETVDWIS--DAINGGSLRHVDLHT 49
F T L C + T G ++ W+S DA++GG R++DL T
Sbjct: 1387 FITFTKLRESCQEIATGLLPGGSLRWVSVSDALDGGQYRNMDLPT 1253
>TC233601 similar to UP|Q7XHJ1 (Q7XHJ1) Pheromone receptor-like protein
(Fragment), partial (45%)
Length = 1014
Score = 27.7 bits (60), Expect = 6.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 249 PERLIGAVRVCQMEMSSATVVDSLYAPPVARGSGLAKVNCQEDDDVGSEA 298
P+R +G R +SSAT + RGSG+ V+C + G ++
Sbjct: 377 PQRKLGRERASSFSISSATPLKG------RRGSGIQVVSCDDTSSQGEKS 508
>TC214851 similar to UP|Q84XA0 (Q84XA0) Early tobacco anther 1, partial (64%)
Length = 927
Score = 27.3 bits (59), Expect = 8.5
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 243 QAEEELPERLIGAVRVCQMEMSSATVVDSLYAPPVARGSGLAKVNCQEDDDV 294
+AE ELP L +++ + A +VD +P G+G+ V C E +DV
Sbjct: 298 KAEHELPLILSAELKIAGSTILVADLVDDTSSPAKTGGNGV--VLCLETEDV 447
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,568,961
Number of Sequences: 63676
Number of extensions: 160941
Number of successful extensions: 636
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of query: 298
length of database: 12,639,632
effective HSP length: 97
effective length of query: 201
effective length of database: 6,463,060
effective search space: 1299075060
effective search space used: 1299075060
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0043b.5