BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0043b.1
(188 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC231872 40 8e-04
AW830686 31 0.39
BU081706 29 1.1
BQ576512 29 1.1
BQ576369 29 1.1
BQ473984 29 1.1
BQ473970 29 1.1
BQ473511 29 1.1
BQ081556 29 1.1
BQ080277 29 1.1
BQ079950 29 1.1
BM887197 29 1.1
BM732816 29 1.1
BM732793 29 1.1
BI942971 29 1.1
BI942927 29 1.1
BI942534 29 1.1
BI788423 29 1.1
BI787484 29 1.1
BI787194 29 1.1
>TC231872
Length = 564
Score = 39.7 bits (91), Expect = 8e-04
Identities = 22/56 (39%), Positives = 32/56 (56%), Gaps = 3/56 (5%)
Frame = -2
Query: 3 IRKAVCVEGLNEEEELTGG---IPRRHMTQLSQVWTSLLLRNIWPSLHVTSLPVTK 55
I + +C+ G + G I R +MT L+Q+W +LLL NI PS H + LP+ K
Sbjct: 179 IAQLLCIPG*DFARTAAGRRVRIMRTNMTTLTQIWMTLLLSNIMPSDHNSDLPLPK 12
>AW830686
Length = 278
Score = 30.8 bits (68), Expect = 0.39
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 26 HMTQLSQVWTSLLLRNIWPSLHVTS 50
+MT L+Q+W LLL NI PS H +S
Sbjct: 76 NMTTLTQIWMMLLLSNILPSDHNSS 2
>BU081706
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 127 KTPKHPPVPKPPSPKQV 177
>BQ576512
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 130 KTPKHPPVPKPPSPKQV 180
>BQ576369
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 124 KTPKHPPVPKPPSPKQV 174
>BQ473984
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 137 KTPKHPPVPKPPSPKQV 187
>BQ473970
Length = 423
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 130 KTPKHPPVPKPPSPKQV 180
>BQ473511
Length = 424
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 126 KTPKHPPVPKPPSPKQV 176
>BQ081556
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 127 KTPKHPPVPKPPSPKQV 177
>BQ080277
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 126 KTPKHPPVPKPPSPKQV 176
>BQ079950
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 119 KTPKHPPVPKPPSPKQV 169
>BM887197
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 117 KTPKHPPVPKPPSPKQV 167
>BM732816
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 111 KTPKHPPVPKPPSPKQV 161
>BM732793
Length = 423
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 121 KTPKHPPVPKPPSPKQV 171
>BI942971
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 99 KTPKHPPVPKPPSPKQV 149
>BI942927
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 25 KTPKHPPVPKPPSPKQV 75
>BI942534
Length = 424
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +3
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 33 KTPKHPPVPKPPSPKQV 83
>BI788423
Length = 422
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 137 KTPKHPPVPKPPSPKQV 187
>BI787484
Length = 424
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 127 KTPKHPPVPKPPSPKQV 177
>BI787194
Length = 423
Score = 29.3 bits (64), Expect = 1.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 143 KEPKHPPAPQGPQPSQM 159
K PKHPP P+ P P Q+
Sbjct: 118 KTPKHPPVPKPPSPKQV 168
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,060,876
Number of Sequences: 63676
Number of extensions: 133098
Number of successful extensions: 1340
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of query: 188
length of database: 12,639,632
effective HSP length: 92
effective length of query: 96
effective length of database: 6,781,440
effective search space: 651018240
effective search space used: 651018240
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Lotus: description of TM0043b.1