BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0042.15
(352 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC207409 UP|Q93YH8 (Q93YH8) HMG I/Y like protein, complete 325 2e-89
TC225776 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, par... 199 1e-51
TC229669 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, par... 159 2e-39
TC204652 similar to UP|H1_PEA (P08283) Histone H1, partial (81%) 115 3e-26
TC204653 similar to UP|Q9AT20 (Q9AT20) Histone H1 (Fragment), pa... 113 1e-25
TC234782 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, par... 113 1e-25
TC206287 UP|HMGA_SOYBN (Q00423) HMG-Y related protein A (SB16A p... 100 1e-21
TC206288 homologue to UP|HMGA_SOYBN (Q00423) HMG-Y related prote... 97 8e-21
TC204654 similar to UP|Q9SLS1 (Q9SLS1) Histone H1, partial (39%) 85 6e-17
TC225038 similar to UP|Q41025 (Q41025) Histone H1, partial (67%) 82 4e-16
TC225033 similar to UP|O65758 (O65758) Histone H1, partial (81%) 80 1e-15
TC225778 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, par... 77 9e-15
TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 ... 75 4e-14
TC226063 similar to UP|Q9M4U6 (Q9M4U6) Histone H1 variant, parti... 75 6e-14
TC226062 similar to UP|H1_LYCPN (P40267) Histone H1, partial (60%) 73 2e-13
TC210538 similar to UP|H1_MAIZE (P23444) Histone H1, partial (29%) 69 2e-12
TC225061 similar to UP|O65758 (O65758) Histone H1, partial (52%) 62 5e-10
TC206558 similar to GB|AAS10008.1|41619036|AY519538 MYB transcri... 55 6e-08
BM523660 similar to SP|P40267|H1_LY Histone H1. [Tomato] {Lycope... 52 5e-07
TC215679 similar to UP|Q6WLH3 (Q6WLH3) Single myb histone 5, par... 50 1e-06
>TC207409 UP|Q93YH8 (Q93YH8) HMG I/Y like protein, complete
Length = 1638
Score = 325 bits (832), Expect = 2e-89
Identities = 216/429 (50%), Positives = 249/429 (57%), Gaps = 85/429 (19%)
Frame = +2
Query: 9 PPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAK 68
PPPP T VPFT E NH ++ + NHPPY EMIY AI ALKEKDGSSK AI K
Sbjct: 83 PPPPATTVPFTVEPSNHVTPAD-----NTNTNHPPYDEMIYTAIGALKEKDGSSKRAIGK 247
Query: 69 YIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSY---------------------KL 107
Y+E+ Y DLPP HS LLTHHL RLK GLLI++KKSY KL
Sbjct: 248 YMEQVYKDLPPTHSALLTHHLNRLKSAGLLILVKKSYKLPGSDPLPVLQAQKPRGRPPKL 427
Query: 108 PSSLPSDIT------------QNAAQ--------------------PVRRGRPP---RSG 132
S +++T Q+A + P RRGRPP RS
Sbjct: 428 KSQPNTELTWPALALNDNPALQSAKRGPGRPKKIAGPVGVSPGPMVPGRRGRPPGTGRSK 607
Query: 133 IPKRRGRPPKPKS---LSNGLKRRP---PKHQLQATVIPFADP-----SLAQPPVPV--- 178
+PKR GRPPKPKS +S+GLKRRP PK + VIPFA P QP VP
Sbjct: 608 LPKRPGRPPKPKSVSAISSGLKRRPGRPPKAESNVNVIPFAAPVAPGLPTVQPIVPTASV 787
Query: 179 --GSPRPRGRPRKNAAALPPP--HAVGGVDSS---------LMVPGRPQKLAVRGRPKNP 225
GSPRPRGRP+K A P +VGG L+ PGRPQKLAV GRPKNP
Sbjct: 788 PNGSPRPRGRPKKIVAGAGAPALSSVGGAPRGRGRPRGVLPLVRPGRPQKLAV-GRPKNP 964
Query: 226 AGRPVGRPKGTTSANI-AQRIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAI 284
A RPVGRPKG+T+A I A + AN++LRRKLE+FQSKVKESL LKPYF+H SPV AIAAI
Sbjct: 965 ARRPVGRPKGSTAAAITAHKAANDDLRRKLEHFQSKVKESLGTLKPYFNHESPVTAIAAI 1144
Query: 285 QELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQPLPEPQITYQQQHLQTQ-LHQLFQ 343
QELE+++T DLKAPLRD Q QP P+PQ+ Y+QQ+ Q Q L Q F
Sbjct: 1145QELEVLSTLDLKAPLRDETHQ--------------QPQPQPQV-YEQQYPQPQPLLQQF- 1276
Query: 344 FQPHASFPS 352
FQPH S PS
Sbjct: 1277FQPHTSAPS 1303
>TC225776 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (26%)
Length = 1663
Score = 199 bits (507), Expect = 1e-51
Identities = 163/390 (41%), Positives = 192/390 (48%), Gaps = 108/390 (27%)
Frame = +1
Query: 56 KEKDGSSKTAIAKYIEEAYTD-LPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLP------ 108
KEK+GSSK AIAKYIE+ Y + LPP HS LLT HL LK +G+L M+KKSY LP
Sbjct: 1 KEKEGSSKRAIAKYIEQVYKEHLPPNHSILLTQHLTLLKSSGMLQMVKKSYALPKTVPLT 180
Query: 109 ---------------------------------SSLPSDI---TQNAAQPV--------- 123
+LP DI Q A+PV
Sbjct: 181 GAAPAQAHDAATSALQLTSPRPRGRPRKAQIPVQNLPQDINVQVQQNAEPVWAALGLADE 360
Query: 124 ---------RRGRPPRS----GIPKRRG----------RPPKPKSLS------NGLKR-- 152
+RGRP +S P +RG RPPK KS++ +G KR
Sbjct: 361 PVQTEGSSKKRGRPKKSVTPGAGPAKRGRPPGSGKRLGRPPKDKSVTTTTTDVSGPKRRP 540
Query: 153 -RPPKHQLQATVIPFADPS----------LAQPPVPVGS-----PRPRGRPRKNAAALPP 196
RPPK+Q Q T IPFA A VPV + PR RGRP+K A +
Sbjct: 541 GRPPKNQSQPTPIPFAPADAAAAVGTEYVAAAETVPVDAAAALGPRARGRPKKYADEMVA 720
Query: 197 PHAVGGVDSSLMVPGRPQKLAVRGRPKNPA------GRPVGRP-KGTTSANIAQRIANEN 249
A G G + RGR + PA RPVGRP KG+TSA+ Q ANE+
Sbjct: 721 --AGRGRGRGRGRGGGGGRGRGRGRGQLPAQLRKSGARPVGRPKKGSTSASTTQNAANED 894
Query: 250 LRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDVPSQKIPE 309
LRRKLE+FQSKVKESL VLKP+F+H SPV AIAAIQELE++ T DL APLRD E
Sbjct: 895 LRRKLEHFQSKVKESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNAPLRDETLPPQEE 1074
Query: 310 QLPLQEHLLP--QPLPEPQITYQQQHLQTQ 337
Q PLQ+ P Q P PQ QQHL Q
Sbjct: 1075QPPLQQQQQPPQQQFPPPQQQPPQQHLAPQ 1164
>TC229669 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (77%)
Length = 1283
Score = 159 bits (401), Expect = 2e-39
Identities = 117/272 (43%), Positives = 138/272 (50%), Gaps = 74/272 (27%)
Frame = +1
Query: 79 PAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSS--LPSDITQ------------------- 117
P H LLTHHL RLK + LL+++KKSYKLP S LP+ Q
Sbjct: 1 PTHPALLTHHLNRLKSSALLVLVKKSYKLPGSHHLPALQPQKTRGRPPKPKPHPVWPAAA 180
Query: 118 --------------------NAAQPVRRGRPP---RSGIPKRRGRPPKPKS---LSNGLK 151
+ P RGRPP RS +PKR GRPPKPKS +S+GLK
Sbjct: 181 LTDSPALLSAKRGPGRPKKIGVSPPGPRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLK 360
Query: 152 R---RPPKHQLQATVIPFA----------DPSLAQPPVPVGSPRPRGRPRKN--AAALPP 196
R RPPK Q VIPFA P L VP GSPRPRGRP+K+ AA P
Sbjct: 361 RRPGRPPKAQSNVNVIPFAAPVAPGLPTVQPILPTASVPNGSPRPRGRPKKSFTAAGAPA 540
Query: 197 PHAVGGVDSS-----------LMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTSANI-AQR 244
AV G ++ PGRPQKLAV GR KNP RPVGRPKG+T+A I A +
Sbjct: 541 LSAVAGAARGRGRGRPRGVFPVVRPGRPQKLAV-GRSKNPVRRPVGRPKGSTAAAITAHK 717
Query: 245 IANENLRRKLEYFQSKVKESLDVLKPYFDHAS 276
ANE+LR+KLE+F S + L + H S
Sbjct: 718 AANEDLRKKLEHFVS*NSLPFECLSYFIIHRS 813
Score = 94.4 bits (233), Expect = 7e-20
Identities = 56/97 (57%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Frame = +3
Query: 258 QSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDVPSQKIPEQLPLQEHL 317
QSKVKESL LKPYF+H SPV AIAAIQELE+++T DLKAPLRD Q+
Sbjct: 846 QSKVKESLGTLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETQQQ----------- 992
Query: 318 LPQPLPEPQI-TYQQQHLQTQLHQLFQ-FQPHASFPS 352
P PLP+ Q Y+QQ+ Q Q QL Q FQPH S PS
Sbjct: 993 -PPPLPQTQTQVYEQQYPQPQSQQLPQFFQPHTSAPS 1100
>TC204652 similar to UP|H1_PEA (P08283) Histone H1, partial (81%)
Length = 1347
Score = 115 bits (288), Expect = 3e-26
Identities = 77/242 (31%), Positives = 117/242 (47%), Gaps = 11/242 (4%)
Frame = +3
Query: 3 SIWVPPPPPPPTAVPFTQEAINHAPDSNI-------PINSSAPAN---HPPYAEMIYRAI 52
++ V P P P +A P +E P++ P S P N HP Y EM+ AI
Sbjct: 126 TVAVEPAPEPASADPPPEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAI 305
Query: 53 EALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLP 112
+LKEK GSS+ AIAK+IEE + LPP LL +HLK+L G L+ +K S+KLP + P
Sbjct: 306 TSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYHLKKLVAAGKLVKVKGSFKLPPTRP 485
Query: 113 SDITQNAAQPVRRGRPPRSGIPKRRGRP-PKPKSLSNGLKRRPPKHQLQATVIPFADPSL 171
+ + +++ P ++ +P + + +P PKPK + + K + A P A P
Sbjct: 486 AASSSSSSSPAKKKKPAAA-----KSKPKPKPKPAAKAKDTKATKSKAPAKPKPAAKPKA 650
Query: 172 AQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVG 231
P +P +P+ +AAA P P A + +P + P PA +P
Sbjct: 651 KAP----AKAKPAAKPKASAAAKPKPAAAKPKAAKPAAKSKP-AAKTKAVPAKPAAKPKA 815
Query: 232 RP 233
+P
Sbjct: 816 KP 821
Score = 32.0 bits (71), Expect = 0.43
Identities = 43/164 (26%), Positives = 66/164 (40%)
Frame = +1
Query: 97 LLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPK 156
LL++L++ + LPS + P+R+ R R + + P + SL L+ R P
Sbjct: 496 LLLLLRRQRRKSPQLPSPSLSLSPSPLRKPRILRQLNRRHQLSPSQLLSLKPKLQPR-PN 672
Query: 157 HQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
L ++ PSL P SP+P + LP P SL++ R
Sbjct: 673 PLLNQRLLLLPSPSLLPP-----SPKPLNQ-------LPSP--------SLLLKQRLFLP 792
Query: 217 AVRGRPKNPAGRPVGRPKGTTSANIAQRIANENLRRKLEYFQSK 260
+ R PK R GR +G Q + RRKL + + K
Sbjct: 793 SPRQSPKPSPSRLQGRRRGLHQGR-KQLLLLSPRRRKLRWQRRK 921
>TC204653 similar to UP|Q9AT20 (Q9AT20) Histone H1 (Fragment), partial (68%)
Length = 1501
Score = 113 bits (282), Expect = 1e-25
Identities = 82/243 (33%), Positives = 118/243 (47%), Gaps = 11/243 (4%)
Frame = +1
Query: 3 SIWVPPPPPPPTAVPFTQEAINHAPDSNI-------PINSSAPAN---HPPYAEMIYRAI 52
++ V P P P TA P +E P++ P S P N HP Y EMI AI
Sbjct: 124 TVAVEPAPEPATAEPPPEEKEEPKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMIKDAI 303
Query: 53 EALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLP 112
+LKEK GSS+ AIAK+IEE + LPP LL +HLK+L G L+ +K S+KLP + P
Sbjct: 304 TSLKEKTGSSQHAIAKFIEEKHKQLPPNFRKLLLYHLKKLVAAGKLVKVKGSFKLPPTRP 483
Query: 113 SDITQNAAQPVRRGRP-PRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSL 171
S +++ P ++ +P P PK + + PKPK + + K + A A P
Sbjct: 484 S--ASSSSSPAKKKKPAPAKPQPKPKPK-PKPKPAAKAKDTKATKSKAPAKPKAAAKPKA 654
Query: 172 AQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVG 231
P P +P+P+ AA+ P P A + +P+ A + K A +P
Sbjct: 655 KVPAKPKPAPKPKAAAA--AASKPKPAAAKPKGTKPAAKPKPKPAA---KTKAAAAKPAA 819
Query: 232 RPK 234
+PK
Sbjct: 820 KPK 828
>TC234782 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (17%)
Length = 344
Score = 113 bits (282), Expect = 1e-25
Identities = 62/108 (57%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Frame = +1
Query: 42 PPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIML 101
PPYAEMIY AIEALKEKDGSSK AIAKYIE+ YT LPP HS LLT HL LK GLL M+
Sbjct: 1 PPYAEMIYTAIEALKEKDGSSKRAIAKYIEQVYTQLPPNHSDLLTQHLNHLKSRGLLQMV 180
Query: 102 KKSYKLPSSLPSDITQNAAQPVRRGRPPR----SGIPKRRGRPPKPKS 145
KKSY LP S+P + A P + P+ RGRP K ++
Sbjct: 181 KKSYALPRSVPVSVPGPAPTQGTSAVPAAVVAITTTPRPRGRPRKAQN 324
>TC206287 UP|HMGA_SOYBN (Q00423) HMG-Y related protein A (SB16A protein),
complete
Length = 1058
Score = 100 bits (249), Expect = 1e-21
Identities = 74/182 (40%), Positives = 97/182 (52%), Gaps = 3/182 (1%)
Frame = +3
Query: 38 PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
P + PPY EMI +A+EAL E +GS+K+AI+KYIE Y +LP A T+L HL ++KD+G
Sbjct: 351 PQSLPPYPEMIVKALEALNEPNGSNKSAISKYIETTYGELPDA--TVLGSHLNKMKDSGE 524
Query: 98 LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKS-LSNGLKRRPPK 156
L S+K QN PP+ G RGRPPKPK+ L G PP+
Sbjct: 525 L-----SFK----------QNNYMKADPNAPPKRG----RGRPPKPKTPLPPGTVVSPPR 647
Query: 157 HQLQATVIPFADPSLAQPPVPVGSPRPRGRPRK--NAAALPPPHAVGGVDSSLMVPGRPQ 214
+ + P A P + GS RPRGRP+K + A+ P AV SS GRP
Sbjct: 648 PRGRPPKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAV----SSGRPRGRPP 815
Query: 215 KL 216
K+
Sbjct: 816 KV 821
>TC206288 homologue to UP|HMGA_SOYBN (Q00423) HMG-Y related protein A (SB16A
protein), complete
Length = 716
Score = 97.4 bits (241), Expect = 8e-21
Identities = 72/184 (39%), Positives = 93/184 (50%), Gaps = 3/184 (1%)
Frame = +2
Query: 42 PPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIML 101
PPY EMI +A+EAL E DGSSK+AI+KYIE Y +LP T+L HL ++K++G L
Sbjct: 41 PPYPEMIVKALEALNEADGSSKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFK 214
Query: 102 KKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPK-SLSNGLKRRPPKHQLQ 160
+ +Y A P PP+ G RGRPPKPK L G PP+ + +
Sbjct: 215 QNNYM------------KADP---NAPPKRG----RGRPPKPKVPLPPGTVVSPPRPRGR 337
Query: 161 ATVIPFADPSLAQPPVPVGSPRPRGRPRK--NAAALPPPHAVGGVDSSLMVPGRPQKLAV 218
P A P + + RPRGRP+K + A+P P AV GRP
Sbjct: 338 PPKDPNAPPKSPKAKATPATGRPRGRPKKVARSPAVPSPTAVS--------TGRP----- 478
Query: 219 RGRP 222
RGRP
Sbjct: 479 RGRP 490
>TC204654 similar to UP|Q9SLS1 (Q9SLS1) Histone H1, partial (39%)
Length = 766
Score = 84.7 bits (208), Expect = 6e-17
Identities = 52/154 (33%), Positives = 81/154 (51%), Gaps = 1/154 (0%)
Frame = +1
Query: 44 YAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKK 103
+ +M+ AI +LKEK GSS+ AIAK+IEE + LPP LL +HLK+L G L+ +K
Sbjct: 328 FLQMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYHLKKLVAAGKLVKVKG 507
Query: 104 SYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRP-PKPKSLSNGLKRRPPKHQLQAT 162
S+KLP + P+ + ++ ++ R S PK + +P PKP + + K +P + + T
Sbjct: 508 SFKLPPTRPAASSSSSPAKKKKARHLLSPQPKPKPKPKPKPAAAAAASKPKPAAAKPKGT 687
Query: 163 VIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPP 196
P P+P+ + AAA P
Sbjct: 688 -------------KPAAKPKPKPAAKTKAAAAKP 750
>TC225038 similar to UP|Q41025 (Q41025) Histone H1, partial (67%)
Length = 862
Score = 82.0 bits (201), Expect = 4e-16
Identities = 56/189 (29%), Positives = 88/189 (45%)
Frame = +2
Query: 27 PDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLT 86
P + +S P +HPP+A MI AI +LKE+ GSS+ AI KYIE + +LP + L+
Sbjct: 152 PKAKKTASSKKPLSHPPFAVMIAEAIASLKERTGSSQYAITKYIEGKHKELPATYKKLVL 331
Query: 87 HHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSL 146
HLK+ G L+ +K S+KL + P+ + AA P + + K + PK K++
Sbjct: 332 VHLKKSVAAGKLVKVKNSFKLAPTKPAPV--KAAAPKKPTKAATKPASKPKAATPKKKAV 505
Query: 147 SNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSS 206
+ +P T P + P+ P + P K A+ P +V S
Sbjct: 506 A-----KPKAKAAATTAKPKSKPAKVAAKKVAAKPAKKKTPVK---AVKKPKSVVKKPKS 661
Query: 207 LMVPGRPQK 215
+ P + K
Sbjct: 662 VKSPAKKTK 688
>TC225033 similar to UP|O65758 (O65758) Histone H1, partial (81%)
Length = 1228
Score = 80.1 bits (196), Expect = 1e-15
Identities = 56/182 (30%), Positives = 88/182 (47%), Gaps = 15/182 (8%)
Frame = +1
Query: 27 PDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLT 86
P + +S P +HP +A MI AI +LKE+ GSS+ AI K+IE + +LPP + L+
Sbjct: 532 PKAKKTASSKKPLSHPTFAVMIAEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVL 711
Query: 87 HHLKRLKDTGLLIMLKKSYKL---------PSSLPSDITQNAAQPVRR-GRPPRSGIPKR 136
HLK+ G L+ +K S+KL ++ P T+ AA+P + P++ PK+
Sbjct: 712 VHLKKSVAAGKLVKVKNSFKLAPTKSAPVKAAAAPKKPTKAAAKPAAKPASKPKAAAPKK 891
Query: 137 RG-RPPKPKSLSNGLKRRP----PKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA 191
+ PK K+ + K +P PK ++ +P V P+ P K A
Sbjct: 892 KAVAKPKAKAAATKPKAKPAKAAPKKVAAKPAKKTPVKAVKKPKSVVKKPKSVKSPAKKA 1071
Query: 192 AA 193
A
Sbjct: 1072KA 1077
Score = 34.7 bits (78), Expect = 0.067
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +2
Query: 158 QLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPP 197
Q Q+TVIPF+ + + PP PR R RPR + LP P
Sbjct: 470 QFQSTVIPFSI*ASSCPPQRSPRPRKRRRPRSPSPILPSP 589
>TC225778 similar to UP|Q93YH8 (Q93YH8) HMG I/Y like protein, partial (12%)
Length = 417
Score = 77.4 bits (189), Expect = 9e-15
Identities = 59/135 (43%), Positives = 73/135 (53%), Gaps = 24/135 (17%)
Frame = +1
Query: 153 RPPKHQLQATVIPFADPSLAQPPV------------PVGS-----PRPRGRPRKNAAALP 195
RPPK+Q Q T+IPFA P+++ V PV + PR RGRP+K A +
Sbjct: 25 RPPKNQSQPTLIPFA-PAVSAASVDTEHVAASAETAPVDADAALGPRARGRPKKYADEMI 201
Query: 196 PPHAVGGVDSSLMVPGRPQKLAVRGR------PKNPAGRPVGRPK-GTTSANIAQRIANE 248
G GR + RGR P+ P RPVGRPK G TSA+ +Q ANE
Sbjct: 202 AAGRGRGRGRGRGGGGRGRG---RGRGELPAQPRKPGARPVGRPKKGPTSASTSQNAANE 372
Query: 249 NLRRKLEYFQSKVKE 263
+LRRKLE+FQSKVKE
Sbjct: 373 DLRRKLEHFQSKVKE 417
>TC225777 weakly similar to UP|Q868B4 (Q868B4) C. elegans GRL-25 protein
(Corresponding sequence ZK643.8), partial (7%)
Length = 762
Score = 75.1 bits (183), Expect = 4e-14
Identities = 47/111 (42%), Positives = 56/111 (50%), Gaps = 23/111 (20%)
Frame = +3
Query: 263 ESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRD--------------------- 301
ESL VLKP+F+H SPV AIAAIQELE++ T DL PLRD
Sbjct: 3 ESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNVPLRDETLPHQVELPPPQPPVQQQQQ 182
Query: 302 VPSQKI--PEQLPLQEHLLPQPLPEPQITYQQQHLQTQLHQLFQFQPHASF 350
P Q++ P Q P Q+HL PQ LP +QQ + L Q QP F
Sbjct: 183 PPQQQLQQPPQQPPQQHLAPQQLPPQPPIFQQTYPPFHLPQFHHHQPSLQF 335
>TC226063 similar to UP|Q9M4U6 (Q9M4U6) Histone H1 variant, partial (47%)
Length = 855
Score = 74.7 bits (182), Expect = 6e-14
Identities = 60/189 (31%), Positives = 88/189 (45%), Gaps = 1/189 (0%)
Frame = +1
Query: 6 VPPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTA 65
V P A +E AP P + A+HPPY +MI A+ AL EK GSS A
Sbjct: 112 VEKPVEEVKAPKLAKEKKPKAPKEKKP-KQAKTASHPPYLQMIKDALIALNEKGGSSPYA 288
Query: 66 IAKYIEEAYTDLPPAH-STLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVR 124
IAKY+EE + + PA+ +L LK G L+ +K SYKL + + ++ A+ +
Sbjct: 289 IAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKL-AEAAKKVKESTAKATK 465
Query: 125 RGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
RP R+ I P K +++ K+ PK + + P+ + P + SP R
Sbjct: 466 ESRPKRNKIATAVA-PKKTEAVKKPAKKVGPKKTKKVST-----PAKPKQPRSIRSPTKR 627
Query: 185 GRPRKNAAA 193
R AAA
Sbjct: 628 ARKAAVAAA 654
>TC226062 similar to UP|H1_LYCPN (P40267) Histone H1, partial (60%)
Length = 883
Score = 72.8 bits (177), Expect = 2e-13
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Frame = +3
Query: 26 APDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAH-STL 84
AP P + A+HPPY +MI A+ AL EK GSS AIAKY+EE + + PA+ +
Sbjct: 186 APKEKKP-KQAKTASHPPYFQMIKEALIALNEKGGSSPYAIAKYMEEKHKAVLPANFKKI 362
Query: 85 LTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKR-----RGR 139
L LK G L+ +K SYKL + +N A+ + + PKR
Sbjct: 363 LGLQLKNQAARGKLVKIKASYKLTEAAKK---ENTAKVTKANAEKKESRPKRSKTATAAA 533
Query: 140 PPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAA 193
P K +++ K+ PK + + P+ + P + SP R R AAA
Sbjct: 534 PKKTEAVKRAAKKVGPKKTKKVST-----PAKPKQPKSIRSPTKRARKAAVAAA 680
>TC210538 similar to UP|H1_MAIZE (P23444) Histone H1, partial (29%)
Length = 643
Score = 69.3 bits (168), Expect = 2e-12
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 5/127 (3%)
Frame = +2
Query: 41 HPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTD-LPPAHSTLLTHHLKRLKDTGLLI 99
HPPY EMI AI LK++ GSS+ AIAK+IE+ ++ LPP LL+ LK+L + L
Sbjct: 2 HPPYLEMIADAISTLKDRTGSSQPAIAKFIEDKHSKVLPPNFRKLLSVQLKKLVKSEKLY 181
Query: 100 MLKKSYKLPSSLPSDITQNA----AQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPP 155
+K SYKL S+ + +N Q V + + + + ++ R + K+ K+ P
Sbjct: 182 KVKNSYKLSSATDKETQKNTETEPKQKVEKKKKKKKKVGEKIKRLSQVKTPETLKKKAPT 361
Query: 156 KHQLQAT 162
K AT
Sbjct: 362 KKDAAAT 382
>TC225061 similar to UP|O65758 (O65758) Histone H1, partial (52%)
Length = 509
Score = 61.6 bits (148), Expect = 5e-10
Identities = 36/101 (35%), Positives = 57/101 (55%), Gaps = 10/101 (9%)
Frame = +2
Query: 47 MIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYK 106
MI AI +LKE+ GSS+ AI K+IE + +LPP + L+ HLK+ G L+ +K S+K
Sbjct: 206 MIAEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHLKKSVAAGKLVKVKNSFK 385
Query: 107 L---------PSSLPSDITQNAAQPVRR-GRPPRSGIPKRR 137
L ++ P T+ AA+P + P++ PK++
Sbjct: 386 LAPTKSAPVKAAAAPKKPTKAAAKPAAKPASKPKAAAPKKK 508
Score = 33.1 bits (74), Expect = 0.19
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 158 QLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPP 197
+ Q+TVIPF+ + + PP PR R RPR + LP P
Sbjct: 12 RFQSTVIPFSI*ASSCPPQRSPRPRKRRRPRSPSPILPSP 131
>TC206558 similar to GB|AAS10008.1|41619036|AY519538 MYB transcription factor
{Arabidopsis thaliana;} , partial (38%)
Length = 670
Score = 54.7 bits (130), Expect = 6e-08
Identities = 38/127 (29%), Positives = 57/127 (43%), Gaps = 5/127 (3%)
Frame = +3
Query: 8 PPPPPPT-----AVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSS 62
P PP PT A P Q A + + N N P Y MI+ A+ ALK+ +GS
Sbjct: 288 PAPPAPTATPQNAAPALQNAASDVTPPDASQNDQDAKNPPRYNAMIFEALSALKDSNGSD 467
Query: 63 KTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQP 122
AI K++E+ + L+ L+RL G L ++K + PS T++ +
Sbjct: 468 MNAIIKFMEQKNLQVNQNFRRALSTKLRRLVSQGKLEKVQKWLQG*KRKPSSGTKSPSPK 647
Query: 123 VRRGRPP 129
+ RPP
Sbjct: 648 PKDVRPP 668
>BM523660 similar to SP|P40267|H1_LY Histone H1. [Tomato] {Lycopersicon
pennellii}, partial (44%)
Length = 429
Score = 51.6 bits (122), Expect = 5e-07
Identities = 38/111 (34%), Positives = 52/111 (46%)
Frame = +1
Query: 26 APDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLL 85
AP P + A+HPPY +MI A+ AL EK GSS AIAKY+EE H +L
Sbjct: 145 APKEKKP-KQAKTASHPPYFQMIKEALIALNEKGGSSPYAIAKYMEE-------KHKAVL 300
Query: 86 THHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKR 136
+ K+ +K SYKL + +N A+ + + PKR
Sbjct: 301 PANFKK---------IKASYKLTEAAKK---ENTAKVTKANAEKKESRPKR 417
>TC215679 similar to UP|Q6WLH3 (Q6WLH3) Single myb histone 5, partial (34%)
Length = 1171
Score = 50.4 bits (119), Expect = 1e-06
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +3
Query: 46 EMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSY 105
++I AI LKE GS+KTAIA +IE+ Y LP S +L+ LK L +G LI + + Y
Sbjct: 159 KLIMEAITCLKENGGSNKTAIAAFIEDQYWALPGLKS-MLSAKLKFLTASGKLIKVNRKY 335
Query: 106 KL-PSSLPSDITQNAAQPVRRGRPPRS 131
++ P + SD +N++ GR S
Sbjct: 336 RIAPIAAYSDRRRNSSVLYLEGRQKAS 416
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,888,872
Number of Sequences: 63676
Number of extensions: 376390
Number of successful extensions: 9679
Number of sequences better than 10.0: 478
Number of HSP's better than 10.0 without gapping: 4815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7504
length of query: 352
length of database: 12,639,632
effective HSP length: 98
effective length of query: 254
effective length of database: 6,399,384
effective search space: 1625443536
effective search space used: 1625443536
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0042.15