TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0042.10
         (217 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC222251 similar to UP|Q6ZXT1 (Q6ZXT1) Small GTPase, partial (94%)    369  e-103
TC221024 similar to UP|Q40196 (Q40196) RAB11F, partial (87%)          310  2e-85
TC229481 homologue to UP|Q08149 (Q08149) GTP-binding protein, co...   235  1e-62
TC217862 homologue to UP|Q08149 (Q08149) GTP-binding protein, co...   234  2e-62
TC229210 similar to UP|Q08149 (Q08149) GTP-binding protein, part...   234  2e-62
TC216443 homologue to UP|Q08150 (Q08150) GTP-binding protein, co...   233  5e-62
TC229081 UP|Q8LJR5 (Q8LJR5) Small GTP-binding protein, complete       231  2e-61
TC230402 homologue to UP|Q08150 (Q08150) GTP-binding protein, co...   230  3e-61
TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein...   222  9e-59
TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein...   221  2e-58
TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein...   216  5e-57
TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding prote...   214  2e-56
TC206875 UP|Q39844 (Q39844) Small GTP-binding protein (Fragment)...   207  3e-54
TC229079 homologue to UP|Q40200 (Q40200) RAB11J, complete             200  4e-52
TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, pa...   197  2e-51
TC216387 homologue to UP|RB1C_ARATH (O04486) Ras-related protein...   159  5e-50
TC214652 homologue to UP|Q39860 (Q39860) GTPase, complete             193  6e-50
TC225644 UP|Q40203 (Q40203) RAB1C, complete                           172  8e-44
TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete       170  5e-43
TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete      169  9e-43

>TC222251 similar to UP|Q6ZXT1 (Q6ZXT1) Small GTPase, partial (94%)
          Length = 911

 Score =  369 bits (947), Expect = e-103
 Identities = 183/216 (84%), Positives = 201/216 (92%), Gaps = 1/216 (0%)
 Frame = +1

Query: 2   MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
           MADA DEECDYLFK VLIGDSGVGKSN+LSRFAKDEFRLDSKPTIGVEFAY NI+V DKL
Sbjct: 175 MADALDEECDYLFKAVLIGDSGVGKSNMLSRFAKDEFRLDSKPTIGVEFAYRNIRVGDKL 354

Query: 62  IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
           IKAQIWDTAGQERFRAITSSYYRGALGAM+VYDI+ RSSYENV  WLLELREFGGEDMVV
Sbjct: 355 IKAQIWDTAGQERFRAITSSYYRGALGAMLVYDISMRSSYENVSKWLLELREFGGEDMVV 534

Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
           +LVGNK DL +SREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFL+MIT+I D+T Q+
Sbjct: 535 VLVGNKCDLDESREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTSQK 714

Query: 182 SLEAKVDEKPINVFSGKEIHLVDEVTATKQ-ATCCS 216
           +L AK++E+PIN+ +GKEIH+ DEVTATKQ +TCCS
Sbjct: 715 NLAAKMEEQPINLLNGKEIHIADEVTATKQTSTCCS 822


>TC221024 similar to UP|Q40196 (Q40196) RAB11F, partial (87%)
          Length = 769

 Score =  310 bits (795), Expect = 2e-85
 Identities = 158/195 (81%), Positives = 175/195 (89%), Gaps = 1/195 (0%)
 Frame = +2

Query: 23  GVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTAGQERFRAITSSY 82
           GVGKSNL+SRFAKDEFRLDSKPTIGVEFAY NIKVRDKLIKAQIWDTAGQERFRAITSSY
Sbjct: 2   GVGKSNLISRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSY 181

Query: 83  YRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDLGQSREVEKEEGK 142
           YRGALGAM+VYDIT+R+++ NV  WL ELREFGGEDMVV+LVGNKSDL QSR+VE+EEGK
Sbjct: 182 YRGALGAMLVYDITKRATFVNVGKWLHELREFGGEDMVVVLVGNKSDLDQSRQVEREEGK 361

Query: 143 GFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVDEKPINVFSGKEIHL 202
            FAETE LCFMETSAL+NLNV+E FLEMITKI DI  Q+SLE K++   +N+ SGKEIH+
Sbjct: 362 VFAETEELCFMETSALQNLNVDEAFLEMITKIHDIISQKSLETKMNGTALNLPSGKEIHI 541

Query: 203 VDEVTATKQAT-CCS 216
            DEVTATKQA  CCS
Sbjct: 542 ADEVTATKQAKYCCS 586


>TC229481 homologue to UP|Q08149 (Q08149) GTP-binding protein, complete
          Length = 1427

 Score =  235 bits (600), Expect = 1e-62
 Identities = 122/218 (55%), Positives = 163/218 (73%), Gaps = 2/218 (0%)
 Frame = +3

Query: 1   MMADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDK 60
           M A   D++ DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA  +I+V DK
Sbjct: 108 MAAYKADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDK 287

Query: 61  LIKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMV 120
           ++KAQIWDTAGQER+RAITS+YYRGA+GA++VYD+TR  ++ENV  WL ELR+    ++V
Sbjct: 288 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIV 467

Query: 121 VILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQ 180
           V+LVGNK+DL   R V  E+   FAE E   FMETSAL++LNVE  F E++T+I  +  +
Sbjct: 468 VMLVGNKADLRHLRAVSTEDATTFAERENTFFMETSALESLNVENAFTEVLTQIYHVVSK 647

Query: 181 RSLEAKVDEKPINVFSGKEIHL--VDEVTATKQATCCS 216
           ++LE  V + P  +  G+ I++   D+V+A K++ CCS
Sbjct: 648 KALE--VGDDPAALPKGQTINIGSRDDVSAVKKSGCCS 755


>TC217862 homologue to UP|Q08149 (Q08149) GTP-binding protein, complete
          Length = 1149

 Score =  234 bits (597), Expect = 2e-62
 Identities = 118/212 (55%), Positives = 161/212 (75%), Gaps = 2/212 (0%)
 Frame = +2

Query: 7   DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
           D++ DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA  +I V DK++KAQI
Sbjct: 221 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQI 400

Query: 67  WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
           WDTAGQER+RAITS+YYRGA+GA++VYD+TR  ++ENV  WL ELR+    ++V++LVGN
Sbjct: 401 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGN 580

Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
           K+DL   R V  ++ K FAE E   FMETSAL++LNV+  F E++T+I  +  +++LE  
Sbjct: 581 KADLRHLRAVSTDDAKAFAERENTFFMETSALESLNVDNAFTEVLTQIYRVVSRKTLE-- 754

Query: 187 VDEKPINVFSGKEIHL--VDEVTATKQATCCS 216
           + + P  +  G+ I++   D+V+A K++ CCS
Sbjct: 755 IGDDPAALPKGQTINVGSRDDVSAVKKSGCCS 850


>TC229210 similar to UP|Q08149 (Q08149) GTP-binding protein, partial (90%)
          Length = 962

 Score =  234 bits (597), Expect = 2e-62
 Identities = 119/215 (55%), Positives = 158/215 (73%), Gaps = 4/215 (1%)
 Frame = +3

Query: 7   DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
           DE+ DYLFK VLIGDSGVGKSNLLSRF ++EF L++K TIGVEFA  ++ V  KL+KAQI
Sbjct: 135 DEDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRSVPVDSKLVKAQI 314

Query: 67  WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
           WDTAGQER+RAITS+YYRGA+GA+VVYD+TR  ++ENV  WL ELR+     +VV+LVGN
Sbjct: 315 WDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTEAYVVVMLVGN 494

Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
           K+DL   R V  EE   FAE E + FMETSAL++LNV+  F+E++T+I ++  +++LE  
Sbjct: 495 KADLRHLRAVSTEEATEFAEKESIYFMETSALESLNVDNAFIEVLTQIYNVVSRKTLETV 674

Query: 187 VDEKPINVFSGKEIHLV----DEVTATKQATCCST 217
            D+         E  ++    D+V+A K++ CCST
Sbjct: 675 DDDPSTKALPKGETIVIGTKDDDVSAVKKSGCCST 779


>TC216443 homologue to UP|Q08150 (Q08150) GTP-binding protein, complete
          Length = 1277

 Score =  233 bits (594), Expect = 5e-62
 Identities = 119/211 (56%), Positives = 155/211 (73%)
 Frame = +3

Query: 7   DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
           D++ DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA   + V  K+IKAQI
Sbjct: 378 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQI 557

Query: 67  WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
           WDTAGQER+RAITS+YYRGA+GA++VYD+TR +++ENV  WL ELR     ++VV+LVGN
Sbjct: 558 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDANIVVMLVGN 737

Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
           KSDL     V  E+GK +AE E L FMETSAL+  NVE  F E++T+I  I  ++++E  
Sbjct: 738 KSDLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGA 917

Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCCST 217
            +        G++I L ++V+A K+  CCS+
Sbjct: 918 ENGTASVPAKGEKIDLKNDVSALKRVGCCSS 1010


>TC229081 UP|Q8LJR5 (Q8LJR5) Small GTP-binding protein, complete
          Length = 1478

 Score =  231 bits (588), Expect = 2e-61
 Identities = 119/211 (56%), Positives = 157/211 (74%), Gaps = 1/211 (0%)
 Frame = +1

Query: 7   DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
           D+E DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA  ++ +  K+IKAQI
Sbjct: 391 DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDAKVIKAQI 570

Query: 67  WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
           WDTAGQER+RAITS+YYRGA+GA++VYD+TRR+++EN   WL ELR+    ++VV+L+GN
Sbjct: 571 WDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGN 750

Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
           KSDL     V  E+GK FAE E L FMETSAL+  NVE  F E++++I  I  +R++EA 
Sbjct: 751 KSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSKRTVEAG 930

Query: 187 VDEKPINVFS-GKEIHLVDEVTATKQATCCS 216
            +     V S G+ I++ D+ +  K+  CCS
Sbjct: 931 KNASSSAVPSKGQTINVKDDSSVLKKIGCCS 1023


>TC230402 homologue to UP|Q08150 (Q08150) GTP-binding protein, complete
          Length = 844

 Score =  230 bits (587), Expect = 3e-61
 Identities = 118/211 (55%), Positives = 154/211 (72%)
 Frame = +1

Query: 7   DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
           D++ DYLFK VLIGDSGVGKSNLLSRF K+EF L+SK TIGVEFA   + V  K+IKAQI
Sbjct: 106 DDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQI 285

Query: 67  WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
           WDTAGQER+RAITS+YYRGA+GA++VYD+TR +++ENV  WL ELR     ++VV+LVGN
Sbjct: 286 WDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDANIVVMLVGN 465

Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
           KSDL     V  E+GK +AE E L FMETSAL+  NVE  F E++T+I  I  ++++E  
Sbjct: 466 KSDLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYRIVSKKAVEGA 645

Query: 187 VDEKPINVFSGKEIHLVDEVTATKQATCCST 217
            +        G++I L ++ +A K+  CCS+
Sbjct: 646 ENGTASVPAKGEKIDLKNDGSALKKVGCCSS 738


>TC214200 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
           complete
          Length = 1240

 Score =  222 bits (566), Expect = 9e-59
 Identities = 115/219 (52%), Positives = 157/219 (71%), Gaps = 3/219 (1%)
 Frame = +3

Query: 2   MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
           MA   D E DYLFK VLIGDSGVGKSN+LSRF ++EF L+SK TIGVEFA   ++V  K 
Sbjct: 261 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 440

Query: 62  IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
           +KAQIWDTAGQER+RAITS+YYRGA+GA++VYDIT+R +++NV+ WL ELR+    ++V+
Sbjct: 441 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 620

Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
           ++ GNKSDL   R V +++G+  AE EGL F+ETSAL+  N+E+ F  ++T+I  I  ++
Sbjct: 621 MMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKK 800

Query: 182 SLEAKVDEKPINVF---SGKEIHLVDEVTATKQATCCST 217
           +L A+  E  +       G  I++ D    TK+  CCST
Sbjct: 801 ALAAQ--EAAVGTTLPGQGTTINVGDASGNTKRG-CCST 908


>TC214158 homologue to UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C,
           complete
          Length = 1243

 Score =  221 bits (563), Expect = 2e-58
 Identities = 114/218 (52%), Positives = 156/218 (71%), Gaps = 3/218 (1%)
 Frame = +3

Query: 2   MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
           MA   D E DYLFK VLIGDSGVGKSN+LSRF ++EF L+SK TIGVEFA   ++V  K 
Sbjct: 240 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT 419

Query: 62  IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
           +KAQIWDTAGQER+RAITS+YYRGA+GA++VYDIT+R +++NV+ WL ELR+    ++V+
Sbjct: 420 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI 599

Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
           ++ GNKSDL   R V +++G+  AE EGL F+ETSAL+  N+E+ F  ++T+I  I  ++
Sbjct: 600 MMAGNKSDLSHLRAVSEDDGQALAEREGLSFLETSALEATNIEKAFQTILTEIYHIVSKK 779

Query: 182 SLEAKVDEKPINVF---SGKEIHLVDEVTATKQATCCS 216
           +L A+  E  +       G  I++ D    TK+  CCS
Sbjct: 780 ALAAQ--EAAVGTILPGQGTTINVGDASGNTKRG-CCS 884


>TC216386 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
           partial (85%)
          Length = 967

 Score =  216 bits (551), Expect = 5e-57
 Identities = 114/218 (52%), Positives = 153/218 (69%), Gaps = 2/218 (0%)
 Frame = +2

Query: 2   MADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKL 61
           MA   +EE DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA   ++V  + 
Sbjct: 179 MARRAEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT 358

Query: 62  IKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVV 121
           +KAQIWDTAGQER+RAITS+YYRGALGA++VYD+T+ +++ENV  WL ELR+    ++V+
Sbjct: 359 VKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADANIVI 538

Query: 122 ILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQR 181
           +L+GNK+DL   R V  E+ +G+AE EGL F+ETSAL+  NVE  F  ++ +I  I  ++
Sbjct: 539 MLIGNKTDLKHLRAVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRIISKK 718

Query: 182 SLEAKVDEKPINVFSGKEIHL--VDEVTATKQATCCST 217
           SL +  D     +  GK I +    E    K + C S+
Sbjct: 719 SLSSN-DPAANIIKEGKTITVGGAPEPNTNKPSCCTSS 829


>TC206925 homologue to UP|Q39844 (Q39844) Small GTP-binding protein
           (Fragment), partial (95%)
          Length = 1111

 Score =  214 bits (545), Expect = 2e-56
 Identities = 110/212 (51%), Positives = 154/212 (71%), Gaps = 3/212 (1%)
 Frame = +1

Query: 7   DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
           +++ DY+FK VLIGDS VGKS +L+RFA++EF LDSK TIGVEF    + ++ K IKAQI
Sbjct: 283 NQKVDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSIKAQI 462

Query: 67  WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
           WDTAGQER+RA+TS+YYRGA+GAM+VYDIT+R S++++  WL ELR    +++V+IL+GN
Sbjct: 463 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHIPRWLEELRNHADKNIVIILIGN 642

Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
           KSDL   R+V  E+ K FAE EGL F+ETSAL+  NVE  F+ ++T+I +I  +++L A 
Sbjct: 643 KSDLENQRQVPTEDAKEFAEKEGLFFLETSALEATNVETAFMTVLTEIFNIINKKNLAAS 822

Query: 187 VDEKPIN--VFSGKEIHLVDEV-TATKQATCC 215
            ++   N    SGK+I +        K++ CC
Sbjct: 823 DNQGNDNSASLSGKKIIVPGPAQEIPKRSMCC 918


>TC206875 UP|Q39844 (Q39844) Small GTP-binding protein (Fragment), complete
          Length = 871

 Score =  207 bits (527), Expect = 3e-54
 Identities = 108/216 (50%), Positives = 153/216 (70%), Gaps = 5/216 (2%)
 Frame = +3

Query: 7   DEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQI 66
           ++  DY+FK VLIGDS VGKS +L+RFA++EF LDSK TIGVEF    + +  K +KAQI
Sbjct: 57  NQRIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQI 236

Query: 67  WDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGN 126
           WDTAGQER+RA+TS+YYRGA+GAM+VYDIT+R +++++  WL ELR    +++V+IL GN
Sbjct: 237 WDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILTGN 416

Query: 127 KSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAK 186
           K DL   R+V  E+ K FAE EGL F+ETSAL+  NVE  F+ ++T+I +I  +++L A 
Sbjct: 417 KCDLENQRDVPTEDAKEFAEKEGLFFLETSALEATNVETAFITVLTEIYNIVNKKNLTAD 596

Query: 187 VDEKPIN--VFSGKEIHL---VDEVTATKQATCCST 217
            ++   N    SG++I +     E+ A K+  CC +
Sbjct: 597 ENQGNGNSASLSGQKIIVPGPAQEIPA-KRNMCCQS 701


>TC229079 homologue to UP|Q40200 (Q40200) RAB11J, complete
          Length = 1096

 Score =  200 bits (509), Expect = 4e-52
 Identities = 108/212 (50%), Positives = 144/212 (66%), Gaps = 5/212 (2%)
 Frame = +2

Query: 11  DYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTA 70
           DYLFK VLIGDS VGKSNLL+RFA+DEF  +SK TIGVEF    + +  K +KAQIWDTA
Sbjct: 341 DYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTA 520

Query: 71  GQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDL 130
           GQERFRA+TS+YYRGA+GA++VYDI+RR +++++  WL EL      ++V ILVGNKSDL
Sbjct: 521 GQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 700

Query: 131 GQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVDEK 190
             +REV   EGK  AE +GL FMETSAL + NV   F  ++ +I +I  ++ + ++   K
Sbjct: 701 KDAREVATAEGKALAEAQGLFFMETSALDSSNVAAAFETVVKEIYNILSRKVMISQELNK 880

Query: 191 P--INVFSGKEIHLV---DEVTATKQATCCST 217
                + +GK + L    D   A  +  CCS+
Sbjct: 881 QDVTRIENGKTVVLQGEGDVEAAQSKKGCCSS 976


>TC207438 homologue to UP|Q08145 (Q08145) GTP-binding protein, partial (95%)
          Length = 853

 Score =  197 bits (502), Expect = 2e-51
 Identities = 106/206 (51%), Positives = 141/206 (67%)
 Frame = +2

Query: 11  DYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTA 70
           +YLFK VLIGDS VGKSNLLSRFA++EF  +SK TIGVEF    +++  K IKAQIWDTA
Sbjct: 143 EYLFKIVLIGDSAVGKSNLLSRFARNEFDSNSKATIGVEFQTQLVEIDGKEIKAQIWDTA 322

Query: 71  GQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDL 130
           GQERFRA+TS+YYRGA+GA+VVYDI+RR ++++++ WL EL       +  +LVGNK DL
Sbjct: 323 GQERFRAVTSAYYRGAVGALVVYDISRRGTFDSIKRWLQELTTQNDSTVARMLVGNKCDL 502

Query: 131 GQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVDEK 190
              REV  EEGK  AE EGL FMETSAL   NV+  F  +I +I +   ++ L +   + 
Sbjct: 503 ENIREVSTEEGKSLAEEEGLFFMETSALDATNVQTAFEIVIREIYNNISRKVLNSDSYKA 682

Query: 191 PINVFSGKEIHLVDEVTATKQATCCS 216
            ++V     + LV+   + +  +CCS
Sbjct: 683 ELSV---NRVSLVNGAGSKQGPSCCS 751


>TC216387 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
           partial (79%)
          Length = 661

 Score =  159 bits (401), Expect(2) = 5e-50
 Identities = 76/113 (67%), Positives = 95/113 (83%)
 Frame = +1

Query: 1   MMADAFDEECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDK 60
           +MA   +EE DYLFK VLIGDSGVGKSNLLSRF ++EF L+SK TIGVEFA   ++V  +
Sbjct: 154 VMARRAEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGR 333

Query: 61  LIKAQIWDTAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELRE 113
            +KAQIWDTAGQER+RAITS+YYRGALGA++VYD+T+ +++ENV  WL ELR+
Sbjct: 334 TVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRD 492



 Score = 56.2 bits (134), Expect(2) = 5e-50
 Identities = 27/57 (47%), Positives = 39/57 (68%)
 Frame = +2

Query: 121 VILVGNKSDLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDI 177
           ++L+GNK+DL   R V  E+ +G+AE EGL F+ETSAL+  NVE  F  ++ +I  I
Sbjct: 491 IMLIGNKTDLKHLRAVATEDAQGYAEKEGLSFIETSALEATNVENAFQTILAEIYRI 661


>TC214652 homologue to UP|Q39860 (Q39860) GTPase, complete
          Length = 1004

 Score =  193 bits (490), Expect = 6e-50
 Identities = 102/211 (48%), Positives = 144/211 (67%), Gaps = 5/211 (2%)
 Frame = +3

Query: 11  DYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWDTA 70
           +YLFK V+IGDS VGKSNLLSR+A++EF + SK TIGVEF    +++  K +KAQIWDTA
Sbjct: 108 EYLFKIVIIGDSAVGKSNLLSRYARNEFNMHSKATIGVEFQTQCLEIDSKEVKAQIWDTA 287

Query: 71  GQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKSDL 130
           GQERFRA+TS+YYRGA+GA++VYDI+RR+++++V  WL EL+      + ++LVGNK DL
Sbjct: 288 GQERFRAVTSAYYRGAVGALIVYDISRRTTFDSVGRWLDELKTHCDTTVAMMLVGNKCDL 467

Query: 131 GQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVDEK 190
              R V  +EGK  AE EGL FMETSAL + NV+  F  +I +I     ++ L ++  + 
Sbjct: 468 ENIRAVSVDEGKSLAEAEGLFFMETSALDSTNVKTAFEMVIREIYTNVSRKVLNSETYKA 647

Query: 191 PINVFSGKEIHLVDEVTATKQA-----TCCS 216
            ++V     + LV+   +T +      +CCS
Sbjct: 648 ELSV---NRVSLVNNGASTSKQNQPYFSCCS 731


>TC225644 UP|Q40203 (Q40203) RAB1C, complete
          Length = 1161

 Score =  172 bits (437), Expect = 8e-44
 Identities = 96/209 (45%), Positives = 128/209 (60%)
 Frame = +1

Query: 9   ECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWD 68
           E DYLFK +LIGDSGVGKS LL RFA D +      TIGV+F    ++   K IK QIWD
Sbjct: 184 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWD 363

Query: 69  TAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKS 128
           TAGQERFR ITSSYYRGA G +VVYD+T + S+ NV+ WL E+  +  E++  +LVGNK 
Sbjct: 364 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 543

Query: 129 DLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVD 188
           DL  ++ V  E  K FA+  G+ FMETSA    NVE+ F+ M  +I         + ++ 
Sbjct: 544 DLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEI---------KNRMA 696

Query: 189 EKPINVFSGKEIHLVDEVTATKQATCCST 217
            +P+N      + +  +    ++A CCST
Sbjct: 697 SQPVNNARPPTVQIRGQ-PVNQKAGCCST 780


>TC227973 UP|Q39845 (Q39845) Small GTP-binding protein, complete
          Length = 932

 Score =  170 bits (430), Expect = 5e-43
 Identities = 94/208 (45%), Positives = 122/208 (58%)
 Frame = +1

Query: 9   ECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWD 68
           E DYLFK +LIGDSGVGKS LL RF+ D +      TIGV+F    ++   K IK QIWD
Sbjct: 151 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWD 330

Query: 69  TAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKS 128
           TAGQERFR ITSSYYRGA G ++VYD+T   S+ NV+ WL E+  +  +++  +LVGNK 
Sbjct: 331 TAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKC 510

Query: 129 DLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKILDITCQRSLEAKVD 188
           DL  +R V  E  K FA+  G+ FMETSA    NVE+ F+ M   I D         ++ 
Sbjct: 511 DLEANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKD---------RMA 663

Query: 189 EKPINVFSGKEIHLVDEVTATKQATCCS 216
            +P N      + +  +  A K   C S
Sbjct: 664 SQPANNARPPTVQIRGQPVAQKGGCCSS 747


>TC216318 homologue to UP|Q43462 (Q43462) Rab7p protein, complete
          Length = 860

 Score =  169 bits (428), Expect = 9e-43
 Identities = 85/166 (51%), Positives = 112/166 (67%)
 Frame = +3

Query: 9   ECDYLFKTVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYSNIKVRDKLIKAQIWD 68
           E DYLFK +LIGDS VGKS LL RFA D +      TIGV+F    +++  K +K QIWD
Sbjct: 90  EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWD 269

Query: 69  TAGQERFRAITSSYYRGALGAMVVYDITRRSSYENVRNWLLELREFGGEDMVVILVGNKS 128
           TAGQERFR ITSSYYRGA G ++VYD+T   S+ NV+ WL E+  +  + +  +LVGNKS
Sbjct: 270 TAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKS 449

Query: 129 DLGQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLEMITKI 174
           DL  ++ V+    K FA+  G+ F+ETSA  ++NVE+ FL M  +I
Sbjct: 450 DLVDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMTAEI 587


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.318    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,683,425
Number of Sequences: 63676
Number of extensions: 75379
Number of successful extensions: 535
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of query: 217
length of database: 12,639,632
effective HSP length: 93
effective length of query: 124
effective length of database: 6,717,764
effective search space: 833002736
effective search space used: 833002736
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)