Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0041.3
         (261 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC212082                                                              243  6e-65
TC223381                                                              206  9e-54
BE210494                                                               58  5e-09
TC224994 similar to GB|AAD39655.1|5103825|F9L1 ESTs gb|AA650895,...    58  5e-09
TC228990 UP|Q9LKZ6 (Q9LKZ6) Receptor-like protein kinase 1, comp...    40  0.001
BQ253789 similar to GP|20805123|dbj P0039G05.13 {Oryza sativa (j...    40  0.001
TC230795 weakly similar to UP|O23299 (O23299) Carnitine racemase...    40  0.001
TC210047 weakly similar to UP|ROA1_HUMAN (P09651) Heterogeneous ...    38  0.004
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)             38  0.004
TC204863 weakly similar to GB|AAM61695.1|21537354|AY085142 hydro...    37  0.007
TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Pro...    37  0.009
TC233295 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%)         37  0.009
TC230206 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A...    37  0.009
TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {A...    37  0.012
TC228913 weakly similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partia...    36  0.015
TC227874 weakly similar to UP|O22670 (O22670) Ag13 protein precu...    36  0.015
TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)     36  0.020
TC232974 weakly similar to GB|AAK54457.1|20384750|AY032998 DNA r...    36  0.020
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4...    35  0.026
TC214599 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin ...    35  0.026

>TC212082 
          Length = 769

 Score =  243 bits (620), Expect = 6e-65
 Identities = 122/144 (84%), Positives = 129/144 (88%)
 Frame = +1

Query: 113 LMALIAADIPGVDRDKCVKMAIVHDIAEAIVGDITPTDGVPKEEKNRLEQEALDHMCKVL 172
           LMALIA+D+PGVDR+KC+KMAIVHDIAEAIVGDITP DGV K EKN+ EQEALDHMCKVL
Sbjct: 16  LMALIASDVPGVDRNKCIKMAIVHDIAEAIVGDITPLDGVSKAEKNQREQEALDHMCKVL 195

Query: 173 GGGSRAKEVAELWAEYEANSSPEAKFVKDLDKVEMILQALEYEHEQGKDLDEFFQSTAGK 232
           GGGS A E+AELW EYEANSSPEAKFVKDLDKVEMILQALEYE EQGKDLDEFF STAGK
Sbjct: 196 GGGSTAMEIAELWMEYEANSSPEAKFVKDLDKVEMILQALEYEVEQGKDLDEFFWSTAGK 375

Query: 233 FQTEIGKAWASEIVSRRKKTNGSS 256
           FQTE G AWASEIVSRRK    +S
Sbjct: 376 FQTETGXAWASEIVSRRKNNK*TS 447


>TC223381 
          Length = 598

 Score =  206 bits (524), Expect = 9e-54
 Identities = 98/133 (73%), Positives = 117/133 (87%)
 Frame = +2

Query: 118 AADIPGVDRDKCVKMAIVHDIAEAIVGDITPTDGVPKEEKNRLEQEALDHMCKVLGGGSR 177
           A D+PG++R++C+K+A+VHDIAEAIVGDITP+DGVPK EK+R+E EAL+ MC++LGGG R
Sbjct: 2   AGDVPGLNRERCIKIALVHDIAEAIVGDITPSDGVPKAEKSRMELEALNKMCELLGGGMR 181

Query: 178 AKEVAELWAEYEANSSPEAKFVKDLDKVEMILQALEYEHEQGKDLDEFFQSTAGKFQTEI 237
           A+E+ ELW EYE NSS EA  VKD DKVEMILQALEYE E GK LDEFF STAGKFQTEI
Sbjct: 182 AEEIKELWEEYENNSSVEANLVKDFDKVEMILQALEYEIEHGKVLDEFFLSTAGKFQTEI 361

Query: 238 GKAWASEIVSRRK 250
           GK+WA+EI+SRRK
Sbjct: 362 GKSWAAEIISRRK 400


>BE210494 
          Length = 403

 Score = 57.8 bits (138), Expect = 5e-09
 Identities = 27/35 (77%), Positives = 28/35 (79%)
 Frame = +2

Query: 141 AIVGDITPTDGVPKEEKNRLEQEALDHMCKVLGGG 175
           AIVGDITP DG  K EKN+ EQ  LDHMCKVLGGG
Sbjct: 203 AIVGDITPLDGGSKAEKNQREQATLDHMCKVLGGG 307


>TC224994 similar to GB|AAD39655.1|5103825|F9L1 ESTs gb|AA650895, gb|AA720043
           and gb|R29777 come from this gene. {Arabidopsis
           thaliana;} , partial (72%)
          Length = 1278

 Score = 57.8 bits (138), Expect = 5e-09
 Identities = 27/35 (77%), Positives = 28/35 (79%)
 Frame = +1

Query: 141 AIVGDITPTDGVPKEEKNRLEQEALDHMCKVLGGG 175
           AIVGDITP DG  K EKN+ EQ  LDHMCKVLGGG
Sbjct: 700 AIVGDITPLDGGSKAEKNQREQATLDHMCKVLGGG 804


>TC228990 UP|Q9LKZ6 (Q9LKZ6) Receptor-like protein kinase 1, complete
          Length = 3346

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
 Frame = +2

Query: 16  SIPSSLSSTQLRFKSVT--------LSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAAS 67
           S+PSS++S  LRF + T        LSP  P       T+A +SSP  S  +T+P S +S
Sbjct: 476 SLPSSIASPTLRFSTSTTTT*PENFLSPSLPCPSSATFTSAATSSPARSLPSTAPGSTSS 655

Query: 68  ATPSASSA 75
            +PS +++
Sbjct: 656 TSPSPATS 679



 Score = 27.3 bits (59), Expect = 7.2
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 10  SSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSA---- 65
           S+ F+S+  SS + +       + S  SPS       A  S +P   S  TSPPSA    
Sbjct: 578 SATFTSAATSSPARSLPSTAPGSTSSTSPS------PATSSPAPSRPSSETSPPSASSTS 739

Query: 66  ASATPSASSAIDFLSIC 82
           A+ TP+ +++   L  C
Sbjct: 740 ATTTPTPAASRPRLETC 790


>BQ253789 similar to GP|20805123|dbj P0039G05.13 {Oryza sativa (japonica
           cultivar-group)}, partial (4%)
          Length = 293

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +2

Query: 49  GSSSPPSSSVTTSPPSAASATPSASSAIDFLSICHRLKTTKR 90
           G   P ++   +   SA  +  S+SS IDFL++CHRLK TKR
Sbjct: 164 GFGEPINNKHASRDASAGLSASSSSSVIDFLTLCHRLKITKR 289


>TC230795 weakly similar to UP|O23299 (O23299) Carnitine racemase like
           protein (AT4g14430/dl3255c), partial (47%)
          Length = 749

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 15  SSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASA---TPS 71
           S +PSSL S +   K     P SP R    +  A +S+ P    T+ PP++ASA   TPS
Sbjct: 66  SYLPSSLRSPKSSPKPPPAPPSSPPRTADSSATASTSAGPRPPATSPPPASASAACPTPS 245

Query: 72  ASSA 75
           A S+
Sbjct: 246 APSS 257


>TC210047 weakly similar to UP|ROA1_HUMAN (P09651) Heterogeneous nuclear
           ribonucleoprotein A1 (Helix-destabilizing protein)
           (Single-strand binding protein) (hnRNP core protein A1),
           partial (12%)
          Length = 520

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 25/73 (34%), Positives = 40/73 (54%)
 Frame = +3

Query: 2   ATATRVLLSSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTS 61
           +T++R    +  +SS+P +LS T          P SPS V   + A+  + PP++S  +S
Sbjct: 219 STSSRTRWRATPTSSLPCALSQT----------PTSPS-VSSSSAASAGTPPPTASAPSS 365

Query: 62  PPSAASATPSASS 74
           PP+A S  PS+ S
Sbjct: 366 PPTATSRRPSSYS 404



 Score = 34.3 bits (77), Expect = 0.059
 Identities = 24/56 (42%), Positives = 32/56 (56%)
 Frame = +3

Query: 18  PSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASATPSAS 73
           P S SST  R  S T +P SPS     T A+ SS+ P +S +TS  +   ATP++S
Sbjct: 102 PRSASST--RTASSTTTPPSPSSSPPPTPASSSSASPLTSSSTSSRTRWRATPTSS 263


>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
          Length = 857

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
 Frame = -1

Query: 9   LSSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTT--AAGSSSPPSS---------- 56
           +SS  SSS  SS S +     S   SP S S    + +  A+ S SPPSS          
Sbjct: 608 VSSSSSSSSSSSSSPSSSSSSSPLSSPSSSSSPSSLPSPLASSSGSPPSSPSSPENSSSS 429

Query: 57  -SVTTSPPSAASATPSASSAIDFLSIC 82
            S ++S PS++S++PS+SS++     C
Sbjct: 428 PSSSSSGPSSSSSSPSSSSSVSLFLFC 348


>TC204863 weakly similar to GB|AAM61695.1|21537354|AY085142
           hydroxyproline-rich glycoprotein-like protein
           {Arabidopsis thaliana;} , partial (30%)
          Length = 786

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 29/57 (50%), Positives = 34/57 (58%), Gaps = 1/57 (1%)
 Frame = +2

Query: 20  SLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSS-VTTSPPSAASATPSASSA 75
           S SST  +  S  LS  SPS     T AA   SPPSS+ +TT PP+A S TP ASS+
Sbjct: 278 SASSTTAKPLSTPLS-RSPSA--RSTRAAPLLSPPSSTTLTTPPPTARSMTPPASSS 439



 Score = 29.3 bits (64), Expect = 1.9
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = +2

Query: 33  LSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASATPSASS 74
           LSP S + +      A S +PP+SS ++S PSA++ T SASS
Sbjct: 362 LSPPSSTTLTTPPPTARSMTPPASS-SSSSPSASAWTRSASS 484


>TC230134 weakly similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23),
           partial (8%)
          Length = 581

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 42/143 (29%), Positives = 63/143 (43%)
 Frame = -3

Query: 10  SSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASAT 69
           SS  SSS  SSLS   L   S + S  SP      ++++ SSS PSS   TS  S++S+ 
Sbjct: 456 SSSSSSSSSSSLSPPPLASGSSSESASSPPSSPEKSSSSSSSSSPSSPSFTSSSSSSSSV 277

Query: 70  PSASSAIDFLSICHRLKTTKRAGWIRKDVQDPESIADHMYRMSLMALIAADIPGVDRDKC 129
             AS  +    +C  L      GW + ++  P +I D      L+A +  D P   R + 
Sbjct: 276 SLAS--LFSSEVCFPLH-----GWSKGNL--PSTIGD----TKLLASVRRD-PVTTRKQA 139

Query: 130 VKMAIVHDIAEAIVGDITPTDGV 152
             +A+   ++        PT  V
Sbjct: 138 RDLAVARRVSSTKASTKEPTHKV 70


>TC233295 similar to UP|Q7KVQ0 (Q7KVQ0) CG4038-PA, partial (6%)
          Length = 557

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 27/66 (40%), Positives = 35/66 (52%), Gaps = 7/66 (10%)
 Frame = +1

Query: 18  PSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASA-------TP 70
           P S SST       T SP   S +  ++ A+ +SS P SS TT PPS+ASA       TP
Sbjct: 178 PPSRSSTS------TTSPPRSSTIPEVSLASPNSSTPCSSSTTRPPSSASAFAAPTLTTP 339

Query: 71  SASSAI 76
            A+S +
Sbjct: 340 RATSPL 357


>TC230206 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
           thaliana;} , partial (28%)
          Length = 1305

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +1

Query: 8   LLSSLFSSSIPSSLSSTQLRFK---SVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPS 64
           LL     ++ PSS ++T  R     + T SP SP+R     + A SSSPP S    SPPS
Sbjct: 145 LLHGTTKTTKPSSCAATAARSSLAPTTTSSPTSPARPKFSPSTAPSSSPPCS--PNSPPS 318

Query: 65  AASATPSAS 73
           A   T + S
Sbjct: 319 ATPQTTTTS 345


>TC231523 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
           thaliana;} , partial (32%)
          Length = 878

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 23/64 (35%), Positives = 36/64 (55%)
 Frame = +2

Query: 10  SSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASAT 69
           SS   ++ PSS ++T  R      +  SP      T+AA   S PS++ ++SPPS+ S+ 
Sbjct: 110 SSRTKTTRPSSCAATAARSSPAPTTTSSP------TSAATPRSSPSTAPSSSPPSSPSSP 271

Query: 70  PSAS 73
           PSA+
Sbjct: 272 PSAT 283


>TC228913 weakly similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (19%)
          Length = 692

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +2

Query: 17  IPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSS-SVTTSPPSAASATPSASS 74
           +PS+ +S+     +   SP S S V +  +   + SPPS+ S TT+PP  A +TPS+S+
Sbjct: 338 VPSASTSST----TSAASPASASSVANTASVTTAPSPPSTPSTTTTPPPTARSTPSSSN 502



 Score = 31.2 bits (69), Expect = 0.50
 Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
 Frame = +2

Query: 3   TATRVLLSSLF------SSSIPS---SLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSS- 52
           TATR   +S        SSS PS   S S+T          P SPS    + T +G SS 
Sbjct: 35  TATRRTTTSTLPPASPRSSSPPSSPPSPSTTPTSSAPANAPPSSPSASTRLQTPSGPSSD 214

Query: 53  ------PPSSSVTTSPPSAASATPSASSAIDFLS 80
                 P S+S   +P  + S  PSAS A    S
Sbjct: 215 ASTSPKPTSTSSRAAPSKSPSTWPSASLATSMSS 316


>TC227874 weakly similar to UP|O22670 (O22670) Ag13 protein precursor,
           partial (21%)
          Length = 894

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 23/66 (34%), Positives = 36/66 (53%)
 Frame = -2

Query: 10  SSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASAT 69
           SSLFS+   SSL+S    F S+TL+  + S V     +A S  P ++S  ++  S  + +
Sbjct: 488 SSLFSAGASSSLASASASFSSLTLTSSAASGVLISAGSAFSFVPSAASCFSTVGSCVTVS 309

Query: 70  PSASSA 75
            + SSA
Sbjct: 308 DTTSSA 291


>TC224715 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (98%)
          Length = 1270

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 23/57 (40%), Positives = 32/57 (55%), Gaps = 1/57 (1%)
 Frame = +2

Query: 15  SSIPSSLSSTQLRFKSVTLSPHSPSRVFHM-TTAAGSSSPPSSSVTTSPPSAASATP 70
           SS PS  + T     S   SP +PS      ++AA S+S PSSS  +SPPS+  ++P
Sbjct: 707 SSSPSPSAPTSPAATSTPPSPSAPSSAATSPSSAASSTSSPSSSAPSSPPSSWPSSP 877



 Score = 34.3 bits (77), Expect = 0.059
 Identities = 22/46 (47%), Positives = 27/46 (57%), Gaps = 4/46 (8%)
 Frame = +2

Query: 34  SPHSPSRVFHMTTAAGSSSPPS----SSVTTSPPSAASATPSASSA 75
           SP S       T+ A +S+PPS    SS  TSP SAAS+T S SS+
Sbjct: 701 SPSSSPSPSAPTSPAATSTPPSPSAPSSAATSPSSAASSTSSPSSS 838



 Score = 27.3 bits (59), Expect = 7.2
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
 Frame = +2

Query: 3   TATRVLLSSLFSSSIPSSLSSTQLRFKSVTLSPHS-----------PSRVFHMTTAAGSS 51
           T TR     L SS   SS S  Q      T SP +           PS +   +++   S
Sbjct: 548 TPTR*RRLWLSSSQPSSSCSPAQAPASPTTSSPTTALPPLPASSPPPSPMHSPSSSPSPS 727

Query: 52  SPPSSSVTTSPPS------AASATPSASSA 75
           +P S + T++PPS      AA++  SA+S+
Sbjct: 728 APTSPAATSTPPSPSAPSSAATSPSSAASS 817


>TC232974 weakly similar to GB|AAK54457.1|20384750|AY032998 DNA repair
           protein XRCC3 {Arabidopsis thaliana;} , partial (40%)
          Length = 909

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 7   VLLSSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSP-PSA 65
           +  S   S + PS  SS +      + + +SPS        A S  PPSSS  +SP PSA
Sbjct: 66  IAASPAASPAPPSPSSSARAVAARRSSASNSPSPPSSPPLTAVSPPPPSSSTPSSPSPSA 245

Query: 66  ASATPSASSA 75
           ASAT  A SA
Sbjct: 246 ASATSHAPSA 275


>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
           {Arabidopsis thaliana;} , partial (39%)
          Length = 867

 Score = 35.4 bits (80), Expect = 0.026
 Identities = 27/75 (36%), Positives = 44/75 (58%)
 Frame = -2

Query: 10  SSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSPPSAASAT 69
           SS  SSS  SS SS+     S + SP   + +   ++++ SSSPPS + ++S  S++S++
Sbjct: 401 SSPCSSSSSSSSSSSSSSLSSSSGSPPRWTSLSSSSSSSSSSSPPSGASSSS--SSSSSS 228

Query: 70  PSASSAIDFLSICHR 84
            S+SS+ D     HR
Sbjct: 227 LSSSSSKDSRRRLHR 183



 Score = 32.7 bits (73), Expect = 0.17
 Identities = 27/73 (36%), Positives = 37/73 (49%)
 Frame = -2

Query: 3   TATRVLLSSLFSSSIPSSLSSTQLRFKSVTLSPHSPSRVFHMTTAAGSSSPPSSSVTTSP 62
           T  R+  S   S+S P S SS+     S +    S       T+ + SSS  SSS   SP
Sbjct: 440 TRGRIRYSVPKSASSPCSSSSSSSSSSSSSSLSSSSGSPPRWTSLSSSSSSSSSS---SP 270

Query: 63  PSAASATPSASSA 75
           PS AS++ S+SS+
Sbjct: 269 PSGASSSSSSSSS 231



 Score = 27.3 bits (59), Expect = 7.2
 Identities = 12/37 (32%), Positives = 23/37 (61%)
 Frame = -1

Query: 46  TAAGSSSPPSSSVTTSPPSAASATPSASSAIDFLSIC 82
           +++ SSS PSS+ ++S   ++S++ S  +   F S C
Sbjct: 201 SSSSSSSSPSSTTSSSDSYSSSSSSSTKTVTSFSSTC 91


>TC214599 GB|AAA34124.1|170354|TOBUBI4A pentameric polyubiquitin {Nicotiana
           sylvestris;} , partial (33%)
          Length = 724

 Score = 35.4 bits (80), Expect = 0.026
 Identities = 28/78 (35%), Positives = 39/78 (49%), Gaps = 4/78 (5%)
 Frame = +3

Query: 8   LLSSLFSSSIPSSLSSTQLRFKSVTLS----PHSPSRVFHMTTAAGSSSPPSSSVTTSPP 63
           LLS   SSS PS    + LR+K++T S    P S +R      +  SSSP SSS T  P 
Sbjct: 114 LLSRCRSSSRPSPERPSPLRWKALTPSTTSRPRSRTRKEFPRISNVSSSPESSSRTAVPS 293

Query: 64  SAASATPSASSAIDFLSI 81
              ++  S    + F+S+
Sbjct: 294 PTTTSRRSQPFTLSFVSV 347


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.312    0.125    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,040,507
Number of Sequences: 63676
Number of extensions: 155788
Number of successful extensions: 4182
Number of sequences better than 10.0: 600
Number of HSP's better than 10.0 without gapping: 2833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3747
length of query: 261
length of database: 12,639,632
effective HSP length: 95
effective length of query: 166
effective length of database: 6,590,412
effective search space: 1094008392
effective search space used: 1094008392
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)


Lotus: description of TM0041.3