BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0041.13
(130 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205991 similar to GB|AAT06461.1|46931314|BT012642 At2g20840 {A... 202 4e-53
TC204884 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, co... 167 2e-42
TC204889 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, pa... 154 9e-39
TC216512 144 1e-35
TC216513 138 8e-34
TC204886 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, pa... 102 5e-23
TC204885 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, pa... 97 2e-21
AW707096 weakly similar to GP|3941289|gb|A similarity to SCAMP37... 95 1e-20
BQ630249 71 6e-20
CO982861 64 3e-11
AW597129 39 7e-04
TC217650 similar to GB|AAP68268.1|31711824|BT008829 At5g47680 {A... 32 0.11
TC217651 similar to GB|AAP68268.1|31711824|BT008829 At5g47680 {A... 32 0.11
BG043436 31 0.19
AW433005 similar to GP|21387055|gb| transmembrane protein-like p... 30 0.32
TC220146 29 0.71
TC216928 similar to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protein,... 29 0.71
TC216927 homologue to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protei... 29 0.71
TC226222 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein... 28 1.2
TC226221 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein... 28 1.6
>TC205991 similar to GB|AAT06461.1|46931314|BT012642 At2g20840 {Arabidopsis
thaliana;} , partial (93%)
Length = 1199
Score = 202 bits (514), Expect = 4e-53
Identities = 95/116 (81%), Positives = 107/116 (91%)
Frame = +1
Query: 12 NSGSVPLATSKLKPLPPEPYDRGATIDIPLDTTKDIKAKEKELQAREAELKRREQELKRK 71
N+GSVP A S+L PLPPEPYDRGATIDIPLD KDIKAKEKELQA+EAELKRREQELKR+
Sbjct: 238 NTGSVPSANSRLSPLPPEPYDRGATIDIPLDNAKDIKAKEKELQAKEAELKRREQELKRR 417
Query: 72 EDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWLGMLKFLFFS 127
EDAIARAGIVIEEKNWPPFFPIIHH+I+KEIP+HLQRIQY+AF TWLG++ L ++
Sbjct: 418 EDAIARAGIVIEEKNWPPFFPIIHHDIAKEIPIHLQRIQYIAFTTWLGLVLCLLWN 585
>TC204884 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, complete
Length = 1343
Score = 167 bits (422), Expect = 2e-42
Identities = 81/127 (63%), Positives = 104/127 (81%), Gaps = 5/127 (3%)
Frame = +2
Query: 6 EMEPARNSGSVPLAT-SKLKPLPPEPYDR----GATIDIPLDTTKDIKAKEKELQAREAE 60
E+ P N GSVP AT S+L PL PEP D GAT+DIPLD++ D+K KEKELQA+E E
Sbjct: 245 EVNPFSNPGSVPAATNSRLPPLKPEPVDYNYGFGATVDIPLDSSMDLKKKEKELQAKETE 424
Query: 61 LKRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWLGM 120
L++REQE++RKE+A +RAGIV+EEKNWPPFFPIIHH+I+ EIP+HLQ++QYVAF T LG+
Sbjct: 425 LRKREQEVRRKEEAASRAGIVLEEKNWPPFFPIIHHDIANEIPIHLQKLQYVAFTTLLGL 604
Query: 121 LKFLFFS 127
+ LF++
Sbjct: 605 VLCLFWN 625
>TC204889 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, partial (59%)
Length = 1257
Score = 154 bits (390), Expect = 9e-39
Identities = 76/113 (67%), Positives = 92/113 (81%), Gaps = 5/113 (4%)
Frame = +1
Query: 12 NSGSV-PLATSKLKPLPPEP----YDRGATIDIPLDTTKDIKAKEKELQAREAELKRREQ 66
N GSV P S+L PL PEP Y GAT+DIPLD + D+K KEKELQA+E EL++REQ
Sbjct: 460 NPGSVAPATNSRLSPLNPEPADYNYGFGATVDIPLDPSTDLKKKEKELQAKENELRKREQ 639
Query: 67 ELKRKEDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWLG 119
E++RKE+A ARAGIV+EEKNWPPFFPIIHH+I+ EIP+HLQR+QYVAF + LG
Sbjct: 640 EVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLG 798
>TC216512
Length = 1149
Score = 144 bits (363), Expect = 1e-35
Identities = 65/126 (51%), Positives = 95/126 (74%), Gaps = 4/126 (3%)
Frame = +2
Query: 6 EMEPARNSGSVPLATSKLKPLPPEPYDRG----ATIDIPLDTTKDIKAKEKELQAREAEL 61
E+ P N G+ P + S++ PL +P G AT+DIPLDTT D K + +EL A EA+L
Sbjct: 146 EVNPFSNGGAAPASKSRIPPLASQPLGFGQRHDATVDIPLDTTNDSKKRGQELAAWEADL 325
Query: 62 KRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWLGML 121
KR+E+E+KR+E+A++RAG+ +++KNWPP FPIIHH+I+ EIP+H QR+QY+AF +WLG++
Sbjct: 326 KRKEKEIKRREEAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQRLQYLAFASWLGIV 505
Query: 122 KFLFFS 127
L F+
Sbjct: 506 LCLGFN 523
>TC216513
Length = 821
Score = 138 bits (347), Expect = 8e-34
Identities = 65/123 (52%), Positives = 90/123 (72%), Gaps = 4/123 (3%)
Frame = +3
Query: 6 EMEPARNSGSVPLATSKLKPLPPEPYDRG----ATIDIPLDTTKDIKAKEKELQAREAEL 61
E+ P N + P + S++ PL E G AT+DIPLDTT D K K +EL A EA+L
Sbjct: 138 EVNPFSNGTTAPASKSRIPPLASESLGFGQRHDATVDIPLDTTNDSKKKGQELAAWEADL 317
Query: 62 KRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWLGML 121
KRRE+E+KR+E+A++RAG+ +++KNWPPFFPIIHH+I+ EIP+H QR+QY+AF +W M+
Sbjct: 318 KRREKEIKRREEAVSRAGVPVDDKNWPPFFPIIHHDIANEIPVHAQRLQYLAFASW*RMV 497
Query: 122 KFL 124
L
Sbjct: 498 HSL 506
>TC204886 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, partial (73%)
Length = 848
Score = 102 bits (254), Expect = 5e-23
Identities = 44/60 (73%), Positives = 56/60 (93%)
Frame = +3
Query: 61 LKRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWLGM 120
L++REQE++RKE+A ARAGIV+EEKNWPPFFPIIHH+I+ EIP+HLQR+QYVAF + LG+
Sbjct: 3 LRKREQEVRRKEEAAARAGIVLEEKNWPPFFPIIHHDIANEIPIHLQRLQYVAFTSLLGL 182
>TC204885 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, partial (33%)
Length = 509
Score = 97.1 bits (240), Expect = 2e-21
Identities = 50/83 (60%), Positives = 65/83 (78%), Gaps = 5/83 (6%)
Frame = +2
Query: 6 EMEPARNSGSVPLAT-SKLKPLPPEPYDR----GATIDIPLDTTKDIKAKEKELQAREAE 60
E+ P N GSVP AT S+L PL PEP D GAT+DIPLD++ D+K KEKELQA+E E
Sbjct: 260 EVNPFYNPGSVPAATNSRLSPLKPEPVDYNYGFGATVDIPLDSSTDLKKKEKELQAKETE 439
Query: 61 LKRREQELKRKEDAIARAGIVIE 83
L++REQE++R+E+A +RAGIV+E
Sbjct: 440 LRKREQEVRRREEAASRAGIVLE 508
>AW707096 weakly similar to GP|3941289|gb|A similarity to SCAMP37 {Pisum
sativum}, partial (17%)
Length = 376
Score = 94.7 bits (234), Expect = 1e-20
Identities = 47/112 (41%), Positives = 77/112 (67%), Gaps = 5/112 (4%)
Frame = +2
Query: 6 EMEPARNSGSVPLAT-SKLKPLPPEP----YDRGATIDIPLDTTKDIKAKEKELQAREAE 60
E+ P N +P T S+L PL P P Y+ T++IPL+++ ++K K+K+LQA + +
Sbjct: 38 EVNPFSNPKXIPTTTNSRLPPLKP*PINYNYNFNTTLNIPLNSSINLKNKKKKLQAEKTK 217
Query: 61 LKRREQELKRKEDAIARAGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYV 112
L + EQEL +K ++ + A I++++KN PP FPIIHH I+ +I +HLQ++QY+
Sbjct: 218 LTKNEQELIQK*ESTSLAKIILKDKNXPPVFPIIHHNITNKIAIHLQKLQYI 373
>BQ630249
Length = 429
Score = 70.9 bits (172), Expect(2) = 6e-20
Identities = 37/76 (48%), Positives = 51/76 (66%), Gaps = 4/76 (5%)
Frame = +2
Query: 6 EMEPARNSGSVPLATSKLKPLPPEPYDRG----ATIDIPLDTTKDIKAKEKELQAREAEL 61
E+ P N + P + S++ PL E G AT+DIPLDTT D K K +EL A EA+L
Sbjct: 32 EVNPFSNGTTAPASKSRIPPLASESLGFGQRHDATVDIPLDTTNDSKKKGQELAAWEADL 211
Query: 62 KRREQELKRKEDAIAR 77
KRRE+E+KR+E+A++R
Sbjct: 212 KRREKEIKRREEAVSR 259
Score = 42.0 bits (97), Expect(2) = 6e-20
Identities = 14/19 (73%), Positives = 18/19 (94%)
Frame = +1
Query: 78 AGIVIEEKNWPPFFPIIHH 96
AG+ +++KNWPPFFPIIHH
Sbjct: 373 AGVPVDDKNWPPFFPIIHH 429
>CO982861
Length = 776
Score = 63.5 bits (153), Expect = 3e-11
Identities = 24/41 (58%), Positives = 35/41 (84%)
Frame = -1
Query: 78 AGIVIEEKNWPPFFPIIHHEISKEIPLHLQRIQYVAFITWL 118
AG +I+++NWPP F IIHH+I+ +IP+H QR+QY+AF +WL
Sbjct: 440 AGDLIDDENWPPIFLIIHHDIANKIPIHAQRLQYLAFASWL 318
>AW597129
Length = 312
Score = 38.9 bits (89), Expect = 7e-04
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +1
Query: 6 EMEPARNSGSVPLATSKLKPLPPEPYDRG----ATIDIPLDTT 44
E+ P N G+ P + S++ PL +P G AT+DIPLDTT
Sbjct: 142 EVNPFSNGGAAPASKSRIPPLASQPLGFGQRHDATVDIPLDTT 270
>TC217650 similar to GB|AAP68268.1|31711824|BT008829 At5g47680 {Arabidopsis
thaliana;} , partial (76%)
Length = 1323
Score = 31.6 bits (70), Expect = 0.11
Identities = 18/38 (47%), Positives = 24/38 (62%)
Frame = +2
Query: 48 KAKEKELQAREAELKRREQELKRKEDAIARAGIVIEEK 85
+AK+ E +A E KR+E E KRKE + AG+ EEK
Sbjct: 173 EAKKAEKKAAAKEQKRKEVERKRKEWEESLAGVSKEEK 286
>TC217651 similar to GB|AAP68268.1|31711824|BT008829 At5g47680 {Arabidopsis
thaliana;} , partial (40%)
Length = 732
Score = 31.6 bits (70), Expect = 0.11
Identities = 18/38 (47%), Positives = 24/38 (62%)
Frame = +2
Query: 48 KAKEKELQAREAELKRREQELKRKEDAIARAGIVIEEK 85
+AK+ E +A E KRR+ E KRKE + AG+ EEK
Sbjct: 194 EAKKAEKKAAAKEQKRRDVERKRKEWEESLAGVSEEEK 307
>BG043436
Length = 436
Score = 30.8 bits (68), Expect = 0.19
Identities = 14/36 (38%), Positives = 24/36 (65%)
Frame = -1
Query: 51 EKELQAREAELKRREQELKRKEDAIARAGIVIEEKN 86
++ L+ RE +L+R + LKRK++ AG+VI K+
Sbjct: 115 DRGLELREQDLRRFGESLKRKQELRTNAGVVIGGKD 8
>AW433005 similar to GP|21387055|gb| transmembrane protein-like protein
{Arabidopsis thaliana}, partial (27%)
Length = 508
Score = 30.0 bits (66), Expect = 0.32
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 34 GATIDIPLDTTKDIKAKEKELQAREAELKRREQELKRKEDAI 75
G I L+ I AK+ + ARE E+ R E ELK+++ A+
Sbjct: 308 GGETTISLEWNTGIHAKDWDSVAREDEIDRVELELKKRDGAV 433
>TC220146
Length = 1013
Score = 28.9 bits (63), Expect = 0.71
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 51 EKELQAREAELKRREQELKRKEDAIARAGIVIEEKN 86
++ L+ RE +L+R + LKR ++ AG+VI K+
Sbjct: 134 DRGLELREQDLRRFGESLKRNQELRTNAGVVIGGKD 27
>TC216928 similar to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protein, partial
(25%)
Length = 354
Score = 28.9 bits (63), Expect = 0.71
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Frame = -2
Query: 1 MDFFSEMEPARNSGSVPL-ATSKLKPLPPEPYDRG 34
+D +E +P R + PL TSK P PP P+D G
Sbjct: 317 VDLPTEGKPTRPTLESPLLVTSKPSPAPPAPFDEG 213
>TC216927 homologue to UP|Q9SVA6 (Q9SVA6) GTP-binding-like protein, complete
Length = 1771
Score = 28.9 bits (63), Expect = 0.71
Identities = 15/35 (42%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Frame = -2
Query: 1 MDFFSEMEPARNSGSVPL-ATSKLKPLPPEPYDRG 34
+D +E +P R + PL TSK P PP P+D G
Sbjct: 444 VDLPTEGKPTRPTLESPLLVTSKPSPAPPAPFDEG 340
>TC226222 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein PM23
(Fragment), partial (92%)
Length = 1616
Score = 28.1 bits (61), Expect = 1.2
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 4/53 (7%)
Frame = +1
Query: 38 DIPLDTTKDIKAKEKE----LQAREAELKRREQELKRKEDAIARAGIVIEEKN 86
D + DI A+ + LQ+R + +K+ E+KRK A+ V EEKN
Sbjct: 640 DADIQELGDISAEALQYIFNLQSRLSSMKKELHEVKRKSAALQMQQFVGEEKN 798
>TC226221 homologue to UP|Q9SEL1 (Q9SEL1) Seed maturation protein PM23
(Fragment), complete
Length = 1663
Score = 27.7 bits (60), Expect = 1.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 54 LQAREAELKRREQELKRKEDAIARAGIVIEEKN 86
LQ+R + +K+ E+KRK A+ V EEKN
Sbjct: 715 LQSRLSSMKKELHEVKRKSAALQMQQFVGEEKN 813
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.319 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,540,581
Number of Sequences: 63676
Number of extensions: 64767
Number of successful extensions: 562
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of query: 130
length of database: 12,639,632
effective HSP length: 86
effective length of query: 44
effective length of database: 7,163,496
effective search space: 315193824
effective search space used: 315193824
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Lotus: description of TM0041.13