BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0039.8
(415 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarit... 79 5e-15
TC231809 35 0.062
TC210984 34 0.14
TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragm... 33 0.18
TC235166 similar to UP|YPL5_ARATH (Q9T096) Yippee-like protein A... 28 5.8
TC234320 28 5.8
CO981082 28 5.8
TC232874 weakly similar to UP|O04020 (O04020) F7G19.3 protein, p... 28 9.9
>TC235032 weakly similar to UP|Q7XDX0 (Q7XDX0) Contains similarity to
ribosomal protein, partial (24%)
Length = 689
Score = 78.6 bits (192), Expect = 5e-15
Identities = 46/100 (46%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Frame = +1
Query: 241 VFNEVLSGNAPMVNFSVNETMYNMRYYLADGIYPPWATFVKTIPMPQGEKRQKFMKRQEA 300
VF +V+ G AP+V F+VNE YNM Y+L GIY W T VKTI P G KR+ F + QEA
Sbjct: 250 VFKDVMEGEAPIVQFAVNEIQYNMGYFLTYGIYLDWTTLVKTILRP*GHKRKLFTQYQEA 429
Query: 301 ARKDVERAFNVLQSRFAIVRGPSRFWHPNEMKS---IMYA 337
RKD + ++ FAI+RG W N ++ MYA
Sbjct: 430 TRKDRI*STSIW---FAIIRGLVCGWSMNTYQAYIICMYA 540
Score = 75.1 bits (183), Expect = 5e-14
Identities = 64/177 (36%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Frame = +3
Query: 191 VAWKGQFTRGDHGKPTIMLEAVASQDLWIWHAFFGIAGSNNDINVLNQSSV--------- 241
VAWKGQ+ GD G PTIML+ V SQ L I HA+ G+ GSNN+INVLN+S V
Sbjct: 105 VAWKGQYCHGD-GPPTIMLKVVVSQYLRI*HAYLGVEGSNNNINVLNESCV*RRYGGRSP 281
Query: 242 FNEVLSGNAPMVNFSVNETMYNMRYYLADGIYPPWATFVKTI--PMPQGEKRQKFMKRQE 299
+ + S P+ + +++ Y R A +P K I + + K+ +K
Sbjct: 282 YCTICS**NPI*HGVLSDIWYLSRLDDACEDHPKAIRS*KKIVYSISRSNKKGSHLK--- 452
Query: 300 AARKDVERAFNVLQSRFAIVRGPSRFWHPNEMKS---IMYACIILHNMIVEDERNTY 353
FN++++ S W +E S MY CIILHNMIV+DE +TY
Sbjct: 453 --------YFNLVRNYTW-----SCVWLEHEHISSIYYMYVCIILHNMIVKDEPHTY 584
>TC231809
Length = 760
Score = 35.0 bits (79), Expect = 0.062
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +3
Query: 291 RQKFMKRQEAARKDVERAFNVLQSRFAIVRGPSRFWHPNEMKSIMYACIILHNMIVEDER 350
++ F R R + R+FNVL++RF I++ ++ + ++ C +LHN I +ER
Sbjct: 207 KELFNHRHCFLRNAILRSFNVLKTRFPILKLAPQYSFQIQRDIVIAGC-VLHNFIRREER 383
Query: 351 NTY 353
N +
Sbjct: 384 NDW 392
>TC210984
Length = 1085
Score = 33.9 bits (76), Expect = 0.14
Identities = 17/61 (27%), Positives = 32/61 (51%)
Frame = +3
Query: 291 RQKFMKRQEAARKDVERAFNVLQSRFAIVRGPSRFWHPNEMKSIMYACIILHNMIVEDER 350
++ F R + R +ER F + +SRF I + F + + ++ AC LHN + ++ R
Sbjct: 423 KELFNLRHASLRNVIERIFGIFKSRFTIFKSAPPFLFKTQAELVL-ACAALHNFLRKECR 599
Query: 351 N 351
+
Sbjct: 600 S 602
>TC212187 weakly similar to UP|Q6USA0 (Q6USA0) Transposase (Fragment),
partial (45%)
Length = 973
Score = 33.5 bits (75), Expect = 0.18
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Frame = +1
Query: 264 MRYYLADGIYPPWATFVKTIP-----MPQGEKRQKFMKRQE-------AARKDVERAFNV 311
+ +YL D YP + F+ + +PQ + R E + + +ERAF +
Sbjct: 508 VNFYLVDSCYPTFMGFLGSYNKTRYHLPQFRIGPRIRGRVEVFNYYHSSLQSTIERAFGL 687
Query: 312 LQSRFAIVRGPSRFWHPNEMKSIMYACIILHNMIVEDERN 351
++R+ I+ S F + I+ AC+ +HN I ++++
Sbjct: 688 CKARWKILGNMSPFALKTQ-NQIIVACMTIHNFIQRNDKS 804
>TC235166 similar to UP|YPL5_ARATH (Q9T096) Yippee-like protein At4g27740,
partial (68%)
Length = 653
Score = 28.5 bits (62), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 61 ERLWKDYFSENPVYTEELFRRRFRMQKHVFLRIV 94
E LW DY + Y E+F +F + K++F +V
Sbjct: 484 EALWNDYIYKIDKYALEVFPDKFSLFKYIFALLV 383
>TC234320
Length = 739
Score = 28.5 bits (62), Expect = 5.8
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +1
Query: 183 WGESRGFPVA------WKGQFTRGDHGKPTIMLEAVASQDLWIWH 221
WG RG+ V WK F + +HG +I V + ++I H
Sbjct: 268 WGSGRGYCVRRNCCYDWKALFRKKNHGAWSIRCRKVGREKMFILH 402
>CO981082
Length = 670
Score = 28.5 bits (62), Expect = 5.8
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 329 NEMKSIMYACIILHNMIVED-ERNTYRGSARVRIKRAEKTRVVTVRPVVRSGCYNWYQSR 387
+E K +Y CI ++N ++ + S R E++R C+N +
Sbjct: 15 SEEKVYIYICIYIYNGYLQKIDVQDPEASGRTSALELEESR---------DCCFNLMITS 167
Query: 388 PLPVRCGSGTNQVEVGGPVT 407
P + C G+N EV GP+T
Sbjct: 168 PT*IECLGGSNL*EVLGPLT 227
>TC232874 weakly similar to UP|O04020 (O04020) F7G19.3 protein, partial (32%)
Length = 715
Score = 27.7 bits (60), Expect = 9.9
Identities = 14/46 (30%), Positives = 24/46 (51%)
Frame = +2
Query: 301 ARKDVERAFNVLQSRFAIVRGPSRFWHPNEMKSIMYACIILHNMIV 346
A K R VL V G + FW+ + + ++YA +I+H+M +
Sbjct: 428 AAKWPRRRSPVLPVSLRRVTGYNTFWYSHHLFVLVYALLIIHSMFL 565
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,477,101
Number of Sequences: 63676
Number of extensions: 227838
Number of successful extensions: 1105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of query: 415
length of database: 12,639,632
effective HSP length: 100
effective length of query: 315
effective length of database: 6,272,032
effective search space: 1975690080
effective search space used: 1975690080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0039.8