BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0039.13
(673 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C2... 45 1e-04
TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 43 5e-04
BE661588 40 0.003
BE822052 similar to GP|4557063|gb|A expressed protein {Arabidops... 40 0.003
TC228840 similar to UP|Q9FYK8 (Q9FYK8) F21J9.22, partial (14%) 40 0.004
TC211489 similar to UP|Q9M1T3 (Q9M1T3) Structural maintenance of... 37 0.022
BU548202 37 0.022
TC221955 weakly similar to UP|Q6UAL1 (Q6UAL1) Myosin heavy chain... 37 0.028
TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%) 36 0.063
TC228567 36 0.063
TC208013 weakly similar to UP|Q8VYJ6 (Q8VYJ6) At2g30880/F7F1.9, ... 34 0.18
TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%) 33 0.31
TC208480 33 0.31
TC220997 weakly similar to UP|Q94AX0 (Q94AX0) AT4g17010/dl4535w,... 33 0.41
TC227017 similar to UP|Q746P8 (Q746P8) Cobalamin , partial (8%) 33 0.41
TC233242 similar to UP|Q9FHK5 (Q9FHK5) Gb|AAF19561.1, partial (11%) 33 0.53
TC230858 33 0.53
TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g4... 32 0.70
TC219964 similar to UP|Q8RY08 (Q8RY08) AT5g59210/mnc17_100, part... 32 0.70
CF922794 32 0.91
>TC210126 similar to UP|NUCL_HUMAN (P19338) Nucleolin (Protein C23), partial
(7%)
Length = 735
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/85 (32%), Positives = 40/85 (46%)
Frame = +3
Query: 317 EDGQSTDEEVDQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLEADHGSDP 376
EDG D+ D E + GEEG E P+ DPE GG G N + E D +
Sbjct: 372 EDGHDQDD--DGEDEEFSGEEGDEEGDPEDDPEANGG---GSDDDDDDNDNEEDDDDGED 536
Query: 377 VQGKGRSVSEEKDTRGPASKKRRVE 401
+ + +E++T P +KKR+ E
Sbjct: 537 EEEEEDEEEDEEETSQPPTKKRK*E 611
>TC219641 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 942
Score = 42.7 bits (99), Expect = 5e-04
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +1
Query: 317 EDGQSTDEEVDQETDVAQGEEGHAENQPQPDPE--DRGGAEVGG----TSGSAKNVSLEA 370
ED D++ D+E D EG E P+ DPE GG++ G G +
Sbjct: 409 EDDDDADDQDDEEGDEDFSGEGEEEADPEDDPEANGAGGSDSDGDDDDDGGDDDDDDNGD 588
Query: 371 DHGSDPVQGKGRSVSEEKDTRGPASKKRR 399
D G D +G+ +E+D P +KKR+
Sbjct: 589 DDGEDEEEGEDEDEEDEEDVPQPPAKKRK 675
>BE661588
Length = 697
Score = 40.4 bits (93), Expect = 0.003
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Frame = +1
Query: 495 ELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVRED 554
++ E +++ E +Q + KEL+ IEEL L+ + E Q ++ + E+
Sbjct: 79 DIPEYKKQAEAAEQEKGQVLKELDSTKRLIEELKLNLERAQTEERQARQDSELAKLRVEE 258
Query: 555 LEGRLK-----AAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKL- 608
+E + AA+ + E AR A + + +E+ +A+ KE + V+ + KK
Sbjct: 259 MEQGIADESSVAAKAQLEVAKARYTAAVSDLIAVKEELAALHKEYASLVTDRDVAIKKAE 438
Query: 609 -AATVSKINKASFNNAVSQLAVVNPGLET 636
A SK + S + +L LET
Sbjct: 439 EAVAASKEVEKSVEDLTVELIAAKESLET 525
>BE822052 similar to GP|4557063|gb|A expressed protein {Arabidopsis
thaliana}, partial (28%)
Length = 668
Score = 40.0 bits (92), Expect = 0.003
Identities = 24/86 (27%), Positives = 39/86 (44%), Gaps = 3/86 (3%)
Frame = -1
Query: 317 EDGQSTDEEVDQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLE---ADHG 373
ED T+++ D+E D EG E P+ DPE G S ++ + D G
Sbjct: 497 EDDHDTNDQNDEEGDEDFSGEGEEEADPEDDPEANGAGGSNDDDDSDEDDDDDNDGDDDG 318
Query: 374 SDPVQGKGRSVSEEKDTRGPASKKRR 399
D + +G +E++ P +KKR+
Sbjct: 317 EDEDEKEGEDEEDEEEVPQPPTKKRK 240
>TC228840 similar to UP|Q9FYK8 (Q9FYK8) F21J9.22, partial (14%)
Length = 1294
Score = 39.7 bits (91), Expect = 0.004
Identities = 40/138 (28%), Positives = 62/138 (43%)
Frame = +2
Query: 471 LNYVLRASLKTASAVRYLQGSTIPELEELREKTEKDDQLISSMSKELEEGCSAIEELSKA 530
L V+RAS +++ G EL L+ Q I + +KEL+ IEEL
Sbjct: 8 LEDVVRASQLEIIELKHTVGELRAELSLLK-------QHIEAQAKELDHRMHRIEELE-- 160
Query: 531 LDNMKLENEQLKKKVQDGDAVREDLEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAV 590
+ ++ NE ++ + D A E++ AAE +A G +E A Q SA+
Sbjct: 161 -EKERVANENIEGLMMDIAAAEEEINRWKVAAEQEAAAGRGVEQEFVA-------QLSAL 316
Query: 591 KKELENRVSSLEADKKKL 608
K+E E S+ +KKL
Sbjct: 317 KQEFEEAKQSMLESEKKL 370
>TC211489 similar to UP|Q9M1T3 (Q9M1T3) Structural maintenance of chromosomes
(SMC)-like protein, partial (15%)
Length = 633
Score = 37.4 bits (85), Expect = 0.022
Identities = 36/141 (25%), Positives = 64/141 (44%), Gaps = 7/141 (4%)
Frame = +3
Query: 498 ELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQ------LKKKVQDGDAV 551
E R K + DD+ I ++K+ E+ S +EEL D E+E L+KK+Q +
Sbjct: 117 EARSK-QWDDKKIEGLNKKKEQYESELEELGSIRDMHLKESEASGKISGLEKKIQYAEIE 293
Query: 552 REDLEGRLKAAEGKAETGAARLKEAEAAWLKER-EQSSAVKKELENRVSSLEADKKKLAA 610
+ +E +L + +T +KER E S ++L + V+ AD +KL
Sbjct: 294 KRSIEDKLSNLSQEKKT------------IKERIECISPDLQKLNDAVNKSNADVRKLEK 437
Query: 611 TVSKINKASFNNAVSQLAVVN 631
+++I + + + V N
Sbjct: 438 RINEITDRIYRDFSKSVGVAN 500
>BU548202
Length = 576
Score = 37.4 bits (85), Expect = 0.022
Identities = 20/61 (32%), Positives = 38/61 (61%)
Frame = -3
Query: 490 GSTIPELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGD 549
G++ ELE L+++T + + SKE+++ + LSK+L+ +K E+E+ KKV+ +
Sbjct: 523 GASKEELENLKKETVQLKEKDEKASKEIKQLKEELSCLSKSLEKIKSESEEKDKKVETAE 344
Query: 550 A 550
A
Sbjct: 343 A 341
>TC221955 weakly similar to UP|Q6UAL1 (Q6UAL1) Myosin heavy chain class XI E3
protein, partial (6%)
Length = 728
Score = 37.0 bits (84), Expect = 0.028
Identities = 25/85 (29%), Positives = 46/85 (53%)
Frame = +1
Query: 524 IEELSKALDNMKLENEQLKKKVQDGDAVREDLEGRLKAAEGKAETGAARLKEAEAAWLKE 583
+E L+ + ++ E E+LKKK+++ + ++E ARLKEAE A LK
Sbjct: 160 LELLTNKNEELETEVEELKKKIKEFEESYSEIENE----------NQARLKEAEEAQLKA 309
Query: 584 REQSSAVKKELENRVSSLEADKKKL 608
+ +++ LE +S+LE++ + L
Sbjct: 310 TQLQETIER-LELSLSNLESENQVL 381
>TC230133 weakly similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
Length = 850
Score = 35.8 bits (81), Expect = 0.063
Identities = 25/87 (28%), Positives = 42/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 316 VEDGQSTDEEVDQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSG-SAKNVSLEADHGS 374
V DG+ D+ D+E + G++G E DPE GG G ++ + D G
Sbjct: 309 VNDGE--DDNDDEEDEDFSGDDGGEEADSDDDPEANGGGGSDDDDGDDDEDDDNDEDDGD 482
Query: 375 DPVQGKGRSVSEEKDTRGPASKKRRVE 401
+ + +G E++++ P SKKR+ E
Sbjct: 483 EDDEDEGDD-DEDEESPQPPSKKRK*E 560
>TC228567
Length = 1531
Score = 35.8 bits (81), Expect = 0.063
Identities = 41/166 (24%), Positives = 72/166 (42%), Gaps = 7/166 (4%)
Frame = +2
Query: 457 NDQKYLGDREPAGLLNYVLRASLKTASAVRYLQGSTIPELEE-------LREKTEKDDQL 509
N++ Y +E L + + + +R S +LEE L++ EK
Sbjct: 347 NEEFYKEQKEEVEELKLNIEKATSDVNRLRVASVSLKSKLEEEKSVLASLKQSEEKASAA 526
Query: 510 ISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLEGRLKAAEGKAETG 569
+ ++ ELE+ SAI + + + +L KK+Q ++ A+ A+
Sbjct: 527 VVNLQAELEKSRSAIAFIQMKENEAREMMTELPKKLQKASQEADE-------AKSLAQAA 685
Query: 570 AARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKLAATVSKI 615
A L EA+ +E EQ+ A LE+ S L A K+ AA V+++
Sbjct: 686 QAELIEAQ----EEVEQAKAKSSTLES--SLLAAQKEIEAAKVAEM 805
>TC208013 weakly similar to UP|Q8VYJ6 (Q8VYJ6) At2g30880/F7F1.9, partial
(45%)
Length = 1065
Score = 34.3 bits (77), Expect = 0.18
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Frame = +2
Query: 495 ELEELREKTEKDDQLISSMSKELEE---GCSA-----IEELSKALDNMKLENEQLKKKVQ 546
E+E L +EK +L + KE E G S I + A+ + +L K +
Sbjct: 110 EIERLNNDSEKQQELFTQKLKESAEKIVGLSKEREQLIRQRDAAIQEANMWRSELAK-AR 286
Query: 547 DGDAVREDL----EGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLE 602
+ D + E E +++ AE AET + E+A LKE+E+ A L+ ++
Sbjct: 287 EHDVILEAAVVRAEEKVRVAEANAETRIREAVQRESAALKEKEELLAYVNVLKAQLQRQH 466
Query: 603 AD 604
D
Sbjct: 467 ID 472
>TC211437 similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (7%)
Length = 857
Score = 33.5 bits (75), Expect = 0.31
Identities = 24/101 (23%), Positives = 37/101 (35%), Gaps = 3/101 (2%)
Frame = +1
Query: 334 QGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLEADHGSDP---VQGKGRSVSEEKDT 390
Q + E++ D +D G + + E D G DP G+G +E D
Sbjct: 349 QNKNSETEDEEDGDEDDEDGPDEDEDGDDEEFSGEEGDEGGDPEDEANGEGSDDGDEDDD 528
Query: 391 RGPASKKRRVEDHQDHADGEVQGSEPERAEPVTVVPPSPER 431
D +D DGE + + E E T PP ++
Sbjct: 529 GDDNG------DEEDDDDGEDEEEDEEEDEEETPQPPPTKK 633
Score = 32.3 bits (72), Expect = 0.70
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 317 EDGQSTDEEVDQETDVAQGEEGHAENQPQPDPEDRGGAEVGGTSGSAKNVSLEADHGSDP 376
EDG DE+ D E GEEG P+ D + G++ G + E D
Sbjct: 400 EDGPDEDEDGDDEE--FSGEEGDEGGDPE-DEANGEGSDDGDEDDDGDDNGDEEDDDDGE 570
Query: 377 VQGKGRSVSEEKDTRGPASKKRRVE 401
+ + EE+ + P +KKR+ E
Sbjct: 571 DEEEDEEEDEEETPQPPPTKKRK*E 645
>TC208480
Length = 1576
Score = 33.5 bits (75), Expect = 0.31
Identities = 26/78 (33%), Positives = 43/78 (54%), Gaps = 2/78 (2%)
Frame = +3
Query: 470 LLNYVLRASLKTASAVR--YLQGSTIPELEELREKTEKDDQLISSMSKELEEGCSAIEEL 527
LLN SLK S + YL S +L L +K + IS+++ + + +EEL
Sbjct: 615 LLNEKAVLSLKGESLEQKIYLLES---DLNSLVKKENSTKETISNLNGNIAVLQAQVEEL 785
Query: 528 SKALDNMKLENEQLKKKV 545
++ +N+ LEN+QL++KV
Sbjct: 786 EESRNNLFLENQQLREKV 839
>TC220997 weakly similar to UP|Q94AX0 (Q94AX0) AT4g17010/dl4535w, partial
(70%)
Length = 850
Score = 33.1 bits (74), Expect = 0.41
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Frame = +3
Query: 493 IPELEELREKTEKDDQLISSMSKELEEGCSAIEELSKALD-------NMKLENEQLKKKV 545
+PE L E D++ +++K+LEE +AIE+ K LD M+++ E+ ++
Sbjct: 153 VPEQIILSEVRRMVDEM-KALNKKLEETETAIEDYFKPLDKEAEIIMKMQIQGEERTSEI 329
Query: 546 Q----DGDAVREDLEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRV--- 598
+ A + E A++ + + E+E ++E + + + K L+ V
Sbjct: 330 MMQALEKQATLQQAEAEKNASKHQVNNAETNMNESE--MMEEEKTLTEMLKALQQEVLLE 503
Query: 599 -SSLEADKKKLAATVSKINKASFNNAVSQ 626
+ E+D A S IN +S + S+
Sbjct: 504 KADTESDVNAHQADNSPINLSSASTTTSK 590
>TC227017 similar to UP|Q746P8 (Q746P8) Cobalamin , partial (8%)
Length = 722
Score = 33.1 bits (74), Expect = 0.41
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 FKAFADSYKDFKDQFYRVAPTSPPPFWWFEQ--GPTGGMRPRFPLAWNAAH 237
+ ++ DSY ++ +Y AP PPP +F++ GP+G P PL +++ +
Sbjct: 147 YTSYTDSYSNYYPAYYSGAPPPPPPRPFFDRYAGPSG---PSAPLDYSSTY 290
>TC233242 similar to UP|Q9FHK5 (Q9FHK5) Gb|AAF19561.1, partial (11%)
Length = 738
Score = 32.7 bits (73), Expect = 0.53
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Frame = +3
Query: 501 EKTEKDDQL---ISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLEG 557
EK E ++ L I + +E+ + I+EL+ ++D +KLE + L +V +++E++
Sbjct: 36 EKMEMEEALKGEIQLLKAGIEQRENNIKELNTSIDTLKLEKDNLHVEV---GSLKEEVNS 206
Query: 558 RLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLEADKKKLAATVSK 614
R +G+ E + L E E Q A +E V L++ K+L V +
Sbjct: 207 R----DGRIEHLNSHLNELHV----EHVQLIAGMEEAHKHVEELKSKAKQLEEEVER 353
>TC230858
Length = 641
Score = 32.7 bits (73), Expect = 0.53
Identities = 34/142 (23%), Positives = 53/142 (36%), Gaps = 18/142 (12%)
Frame = +3
Query: 501 EKTEKD-DQLISSMSKELEEGCSAIEELSKALDNMKLENEQLKKKVQDGDAVREDLEG-- 557
+KT +D DQL+ S S LSK L++ K + +Q+ KV +G E +
Sbjct: 63 QKTIQDYDQLLESRSL-----------LSKQLESAKAQQDQINLKVSEGKTQFEKINSEI 209
Query: 558 ---------------RLKAAEGKAETGAARLKEAEAAWLKEREQSSAVKKELENRVSSLE 602
+LK A + +LK A W+ E + KE E
Sbjct: 210 DELEHKLCALVVTRDKLKRALDSCDAENNKLKTQVAKWVPECKSIITALKESETSYKVAL 389
Query: 603 ADKKKLAATVSKINKASFNNAV 624
DK+K + + K N +
Sbjct: 390 TDKRKTEDEWADLKKTFVANKI 455
>TC232681 weakly similar to GB|AAP21377.1|30102918|BT006569 At1g47970
{Arabidopsis thaliana;} , partial (39%)
Length = 867
Score = 32.3 bits (72), Expect = 0.70
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Frame = +1
Query: 317 EDGQSTDEEVDQETDVAQG----------EEGHAENQPQPDPEDRGGAEVGGTSGSAKNV 366
+D + DEE D E D G EE + +PD +D + +
Sbjct: 214 DDDDNEDEEDDDEDDAPDGGDDDDDEDEEEESDVQRGGEPDDDDNDDDDEDEDEEDEEEQ 393
Query: 367 SLEADHGSDPVQGKGRSVSEEKDTRG--PASKKRRVEDHQDHADGEVQGSEPER 418
EAD G++ + + EE+ + P E+ D DGE + P+R
Sbjct: 394 GEEADLGTEYLIRPLVTAEEEEASSDFEPEENGEEEEEDVDDEDGEKSEAPPKR 555
>TC219964 similar to UP|Q8RY08 (Q8RY08) AT5g59210/mnc17_100, partial (24%)
Length = 562
Score = 32.3 bits (72), Expect = 0.70
Identities = 30/126 (23%), Positives = 53/126 (41%), Gaps = 26/126 (20%)
Frame = +3
Query: 497 EELREKTEKDDQLISSMSKELEEGCSAIEE----LSKALDNMKLENEQLKKKVQDGD--- 549
E + +E D + S K L++ + +EE +S L M+++NE + K++ D +
Sbjct: 192 ESANKLSETDLSALLSQLKGLQKKNTELEEENTKISLKLQTMEIDNETMHKQLNDVEQNT 371
Query: 550 -------------------AVREDLEGRLKAAEGKAETGAARLKEAEAAWLKEREQSSAV 590
REDL +L+ + RLKEAE + E ++A+
Sbjct: 372 VPSLRKALRDVAMEKDAAVVAREDLSAQLRTLK-------KRLKEAEDEQYRAEEDAAAL 530
Query: 591 KKELEN 596
EL +
Sbjct: 531 SAELNS 548
>CF922794
Length = 649
Score = 32.0 bits (71), Expect = 0.91
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Frame = +1
Query: 465 REPAGLLNYVLRASLKTASAVRYLQGSTIPELEELREKTEKDDQLISSMSKELEEGCSAI 524
++ A L +V SLK A V +LE E+ + D I+ + +EL S
Sbjct: 13 KKTADLETHVPDCSLKIAKLVA--------QLELAEEQLKISDDEIARLKEELNSRSSGT 168
Query: 525 EELSKALDNMKLENEQLKKKVQDGDAVREDLEGRL---KAAEGKAETGAARLK----EAE 577
EL L+ + L+ ++ DLEGR+ KA E E +LK +A+
Sbjct: 169 HELQGQLEVAQEIVAALESQLVSERKQIHDLEGRVTWYKANETNTEHAVQKLKAKMLDAQ 348
Query: 578 AAWLKERE-------QSSAVKKEL--------------ENRVSSLEADKKKL 608
A + E++ + S K+L EN+ LEA+K KL
Sbjct: 349 AQFSLEKDLLHSDIARLSEENKQLGSRLEEYESRSNIIENKSRQLEAEKLKL 504
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,370,868
Number of Sequences: 63676
Number of extensions: 352098
Number of successful extensions: 1778
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of query: 673
length of database: 12,639,632
effective HSP length: 104
effective length of query: 569
effective length of database: 6,017,328
effective search space: 3423859632
effective search space used: 3423859632
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0039.13