TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0036c.6
         (70 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC229637 similar to UP|KIWI_ARATH (O65154) RNA polymerase II tra...   133  2e-32
TC229636 similar to UP|KIWI_ARATH (O65154) RNA polymerase II tra...    97  2e-21
TC205826 similar to UP|KELP_ARATH (O65155) RNA polymerase II tra...    74  1e-14
TC205825 similar to UP|KELP_ARATH (O65155) RNA polymerase II tra...    74  1e-14
AW832638 weakly similar to GP|13872930|dbj P0684B02.23 {Oryza sa...    42  8e-05
TC229126                                                               30  0.24
TC229127                                                               30  0.31
TC215255 similar to UP|Q39087 (Q39087) DNA-binding protein, part...    28  1.2
AW311611                                                               26  3.4
TC227348 similar to UP|Q9SMX5 (Q9SMX5) GCN4-complementing protei...    26  3.4
TC227347 similar to UP|O04097 (O04097) BRCA1-associated RING dom...    26  3.4
TC217849 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociati...    25  9.9
BQ296015                                                               25  9.9

>TC229637 similar to UP|KIWI_ARATH (O65154) RNA polymerase II transcriptional
           coactivator KIWI, partial (55%)
          Length = 743

 Score =  133 bits (335), Expect = 2e-32
 Identities = 59/70 (84%), Positives = 68/70 (96%)
 Frame = +1

Query: 1   DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
           DPDS+ +CEISKNRRV+VRNW+G I+VDIREFYVKDGKQ+PG+KGISLTMDQWNVLRNH+
Sbjct: 304 DPDSVTICEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMDQWNVLRNHV 483

Query: 61  EEIDKAVNES 70
           EEIDKAVNE+
Sbjct: 484 EEIDKAVNEN 513


>TC229636 similar to UP|KIWI_ARATH (O65154) RNA polymerase II transcriptional
           coactivator KIWI, partial (43%)
          Length = 467

 Score = 97.1 bits (240), Expect = 2e-21
 Identities = 44/51 (86%), Positives = 49/51 (95%)
 Frame = +3

Query: 1   DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMD 51
           DPDSI VCEISKNRRV+VRNW+G I+VDIREFYVKDGKQ+PG+KGISLTMD
Sbjct: 315 DPDSITVCEISKNRRVAVRNWKGSIMVDIREFYVKDGKQLPGRKGISLTMD 467


>TC205826 similar to UP|KELP_ARATH (O65155) RNA polymerase II transcriptional
           coactivator KELP, partial (46%)
          Length = 865

 Score = 74.3 bits (181), Expect = 1e-14
 Identities = 28/69 (40%), Positives = 51/69 (73%)
 Frame = +1

Query: 1   DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
           D   +++C +S  RRV++++++G+ +V IRE+Y KDGK++P  KGISLT +QW+  + ++
Sbjct: 358 DEGDLIICRLSDKRRVTIQDFRGKTLVSIREYYKKDGKELPTSKGISLTEEQWSTFKKNV 537

Query: 61  EEIDKAVNE 69
             I+KA+ +
Sbjct: 538 PAIEKAIKK 564


>TC205825 similar to UP|KELP_ARATH (O65155) RNA polymerase II transcriptional
           coactivator KELP, partial (46%)
          Length = 771

 Score = 74.3 bits (181), Expect = 1e-14
 Identities = 28/69 (40%), Positives = 51/69 (73%)
 Frame = +3

Query: 1   DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
           D   +++C +S  RRV++++++G+ +V IRE+Y KDGK++P  KGISLT +QW+  + ++
Sbjct: 342 DEGDLIICRLSDKRRVTIQDFRGKTLVSIREYYKKDGKELPTSKGISLTEEQWSAFKKNV 521

Query: 61  EEIDKAVNE 69
             I+KA+ +
Sbjct: 522 PAIEKAIKK 548


>AW832638 weakly similar to GP|13872930|dbj P0684B02.23 {Oryza sativa
           (japonica cultivar-group)}, partial (12%)
          Length = 271

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 21/67 (31%), Positives = 35/67 (51%)
 Frame = +2

Query: 1   DPDSIVVCEISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRNHI 60
           D   +++C  S   R +   + G   V I   Y  DG  +P  KGISLT +QW+  + ++
Sbjct: 56  DECDLIICMRSYKTRATKHEYIGITFVSIL*CYN*DGTDLPTYKGISLTEEQWSPFKKNV 235

Query: 61  EEIDKAV 67
             I++A+
Sbjct: 236 PAIEQAI 256


>TC229126 
          Length = 529

 Score = 30.0 bits (66), Expect = 0.24
 Identities = 13/23 (56%), Positives = 18/23 (77%)
 Frame = +3

Query: 47  SLTMDQWNVLRNHIEEIDKAVNE 69
           SL   + NV+R H+EEIDKA++E
Sbjct: 174 SLIRFRSNVVRGHVEEIDKAISE 242


>TC229127 
          Length = 1013

 Score = 29.6 bits (65), Expect = 0.31
 Identities = 11/16 (68%), Positives = 15/16 (93%)
 Frame = +2

Query: 54  NVLRNHIEEIDKAVNE 69
           NV+R H+EEIDKA++E
Sbjct: 737 NVVRGHVEEIDKAISE 784


>TC215255 similar to UP|Q39087 (Q39087) DNA-binding protein, partial (67%)
          Length = 732

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 12  KNRRVSVRNWQGRIVVDIREFYVKDGK 38
           +NRR  ++NWQ  I++DIR    K  K
Sbjct: 676 QNRRNHIQNWQLEIILDIRPKMQKKSK 596


>AW311611 
          Length = 272

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 10/13 (76%), Positives = 12/13 (91%)
 Frame = +3

Query: 54 NVLRNHIEEIDKA 66
          NV+R H+EEIDKA
Sbjct: 27 NVVRGHVEEIDKA 65


>TC227348 similar to UP|Q9SMX5 (Q9SMX5) GCN4-complementing protein (GCP1),
           partial (29%)
          Length = 1197

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 9   EISKNRRVSVRNWQGRIVVDIREFY 33
           +I +N  VS+R WQ    V++RE Y
Sbjct: 948 DIPENPSVSIRIWQAVQAVNVREVY 1022


>TC227347 similar to UP|O04097 (O04097) BRCA1-associated RING domain protein
           isolog; 106935-111081, partial (17%)
          Length = 982

 Score = 26.2 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 9   EISKNRRVSVRNWQGRIVVDIREFY 33
           +I +N  VS+R WQ    V++RE Y
Sbjct: 292 DIPENPSVSIRIWQAVQAVNVREVY 366


>TC217849 weakly similar to UP|Q7Y0Q8 (Q7Y0Q8) Rac GDP-dissociation inhibitor
           1, partial (66%)
          Length = 1067

 Score = 24.6 bits (52), Expect = 9.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 1   DPDSIVVCEISKNRRVS--VRNWQGRIVVDIREFYVKDGKQMPGKKGISLTMDQWNVLRN 58
           +P    +CE S +R+ +  V++W          F+ K G+ +     +SL  DQWN  R 
Sbjct: 203 NPPKKRMCEPSSSRKKTPRVQSWLVTGAKFRTFFFAKLGRIVCFVVFVSLGNDQWN*YRR 24

Query: 59  H 59
           H
Sbjct: 23  H 21


>BQ296015 
          Length = 423

 Score = 24.6 bits (52), Expect = 9.9
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 10  ISKNRRVSVRNWQGRIVVDIREFYVKDGKQMPGKKG-ISLTMDQWNVLRNHIEEI----D 64
           I +NRR+ +++   ++V  I   Y+K  K M  ++  + L       LR  IE++    +
Sbjct: 94  IERNRRIHMKSLCFKLVSTIPSNYLKTSKDMLSQQDQLHLAATYIKHLRERIEKLKGEKE 273

Query: 65  KAVN 68
           KA+N
Sbjct: 274 KAMN 285


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,899,700
Number of Sequences: 63676
Number of extensions: 27481
Number of successful extensions: 140
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of query: 70
length of database: 12,639,632
effective HSP length: 46
effective length of query: 24
effective length of database: 9,710,536
effective search space: 233052864
effective search space used: 233052864
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)