TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0036c.5
         (55 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AI736706                                                               32  0.052
TC203565                                                               26  4.9
TC228334 similar to UP|Q9SW80 (Q9SW80) Bel1-like homeodomain 2 (...    25  8.3

>AI736706 
          Length = 426

 Score = 32.3 bits (72), Expect = 0.052
 Identities = 15/42 (35%), Positives = 25/42 (58%)
 Frame = +3

Query: 3   VFDWAQLVGKNNDFVVIMIRSDYGTLNGKESLTLGCEQGGKF 44
           + +WA+ V K N FV+I++RS+  T + K + +  C Q   F
Sbjct: 294 MLNWARDVAKENGFVLIILRSETSTRSTKYTRSTRCNQRKTF 419


>TC203565 
          Length = 851

 Score = 25.8 bits (55), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 25  YGTLNGKESLTLGCEQGGKFKPYKGNFDIR 54
           YG +N K  L L   +GG+     GN+D+R
Sbjct: 735 YGQVN*KSKLLLNKNKGGRNA*KVGNYDLR 646


>TC228334 similar to UP|Q9SW80 (Q9SW80) Bel1-like homeodomain 2
           (AT4g36870/C7A10_490), partial (9%)
          Length = 910

 Score = 25.0 bits (53), Expect = 8.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 25  YGTLNGKESLTLGCEQGGKFKPYKGNFDIR 54
           +GT  G  SLTLG    G     K  F +R
Sbjct: 502 FGTTPGDVSLTLGLRHAGNMPSEKTPFSVR 591


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.322    0.143    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,055,539
Number of Sequences: 63676
Number of extensions: 16160
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of query: 55
length of database: 12,639,632
effective HSP length: 31
effective length of query: 24
effective length of database: 10,665,676
effective search space: 255976224
effective search space used: 255976224
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)