BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0036b.1
(122 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM308209 33 0.024
TC207036 28 0.45
TC211728 similar to UP|Q7FRS8 (Q7FRS8) Calcineurin B-like protei... 28 0.59
AI900135 27 1.7
TC234020 similar to UP|Q9M314 (Q9M314) Prolyl aminopeptidase-lik... 27 1.7
TC234972 27 1.7
TC224425 weakly similar to UP|Q98IT4 (Q98IT4) Probable tetracycl... 26 2.2
TC208936 similar to UP|Q85708 (Q85708) Env gene product (321 AA)... 26 2.2
TC206576 similar to UP|Q9LQP6 (Q9LQP6) F24B9.20, partial (40%) 26 2.2
TC233425 homologue to UP|Q9VKG5 (Q9VKG5) CG14930-PA (AT28291p), ... 26 2.2
AW184926 26 2.9
BM270539 26 2.9
TC227967 homologue to UP|Q84WX3 (Q84WX3) Auxin efflux carrier pr... 26 2.9
BU544588 25 3.8
TC208939 UP|Q39830 (Q39830) BiP isoform A, complete 25 3.8
TC212515 similar to GB|AAM15519.1|20198312|U78721 Expressed prot... 25 3.8
TC219579 similar to UP|Q94FN1 (Q94FN1) Phosphatidylinositol tran... 25 3.8
TC206661 25 5.0
TC227068 similar to UP|Q6UV11 (Q6UV11) Pseudo-response regulator... 25 5.0
BG043528 25 5.0
>BM308209
Length = 435
Score = 32.7 bits (73), Expect = 0.024
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = +3
Query: 8 YEPNDSLRSDRFIVSLKDHSSTCNFSELLEILSRHVVAGI 47
+E + S+ SD+FIV+L S + N E+ IL RH A I
Sbjct: 315 FEVSHSMLSDKFIVNLNSWSCS*NLWEITGILCRHACAAI 434
>TC207036
Length = 868
Score = 28.5 bits (62), Expect = 0.45
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 27 SSTCNFSELLEILSRHVVAGIFYKGLNIVLCIL 59
S+T NF + I+S H + IFY L+I +CI+
Sbjct: 364 SNTHNF--FIIIISHHNIYNIFYSRLSITMCIM 456
>TC211728 similar to UP|Q7FRS8 (Q7FRS8) Calcineurin B-like protein 10,
partial (57%)
Length = 909
Score = 28.1 bits (61), Expect = 0.59
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 51 GLNIVLCILILQKDKLIRTHTCTLLHQLMGKSKVFDANCYS 91
GL C L L + +I T LL QLM + + NC++
Sbjct: 358 GLQQCQCELFLVDEAIINDRTTQLLEQLMQRLDFINTNCHT 236
>AI900135
Length = 411
Score = 26.6 bits (57), Expect = 1.7
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = -3
Query: 49 YKGLNIVLCILILQKDKLIRTHTCTLLHQLMGKSKV 84
+KGLN LCI L K K +TC + + +SK+
Sbjct: 226 HKGLNNCLCISSLTKKK---ANTCLIFFSFL*RSKI 128
>TC234020 similar to UP|Q9M314 (Q9M314) Prolyl aminopeptidase-like protein
(AT3g61540/F2A19_140), partial (22%)
Length = 436
Score = 26.6 bits (57), Expect = 1.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 6 DWYE-PNDSLRSDRFIVSLKDHSSTCNFSELLEILSRHVVA 45
DWY P+ LR RF V L DH + S + + +R VVA
Sbjct: 108 DWYSVPDLRLRDHRFKVPL-DHCRGLHSSPKITVFAREVVA 227
>TC234972
Length = 919
Score = 26.6 bits (57), Expect = 1.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 23 LKDHSSTCNFSELLEILSRHVVAGIFYKGLNIVLCILIL 61
L D+ T NF+ + + AG + GLN+++C+LIL
Sbjct: 556 LSDNWETLNFASSV---LKQSSAGSGFSGLNLLVCLLIL 449
>TC224425 weakly similar to UP|Q98IT4 (Q98IT4) Probable tetracycline
repressor protein, partial (12%)
Length = 943
Score = 26.2 bits (56), Expect = 2.2
Identities = 10/30 (33%), Positives = 18/30 (59%)
Frame = +2
Query: 63 KDKLIRTHTCTLLHQLMGKSKVFDANCYSY 92
+ +++ +CT L+Q GKS + N +SY
Sbjct: 23 RKRILHGFSCTTLNQF*GKSHLIQPNWFSY 112
>TC208936 similar to UP|Q85708 (Q85708) Env gene product (321 AA) (Fragment),
partial (6%)
Length = 1040
Score = 26.2 bits (56), Expect = 2.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 47 IFYKGLNIVLCILILQKDKLIRTH 70
IFYK + + +C+ +LQK K+ TH
Sbjct: 284 IFYKRIWVQICLGMLQKKKV*TTH 355
>TC206576 similar to UP|Q9LQP6 (Q9LQP6) F24B9.20, partial (40%)
Length = 1157
Score = 26.2 bits (56), Expect = 2.2
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = -1
Query: 30 CNFSELLEILSRHVVAGIFYKG-LNIVLCILILQKDKLIRTHT 71
C+ + L ++ + ++ K L ++L +LIL + +IRTHT
Sbjct: 314 CSLNRLHALIPKRLIYS*HLKAELGLILVLLILLDELVIRTHT 186
>TC233425 homologue to UP|Q9VKG5 (Q9VKG5) CG14930-PA (AT28291p), partial (6%)
Length = 951
Score = 26.2 bits (56), Expect = 2.2
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = -2
Query: 57 CILILQKDKLIRTHTCTLLHQL 78
C I+ ++K+I TCT LHQ+
Sbjct: 815 CTTIISQNKIIIIITCTTLHQI 750
>AW184926
Length = 450
Score = 25.8 bits (55), Expect = 2.9
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Frame = +2
Query: 19 FIVSLKDHSSTCNFSELLEILSRHVV---------AGIFYKGL--NIVLCILILQKDKLI 67
F+ +S+ L+ I+S H++ A + Y + N+++C+ +L+++KL
Sbjct: 5 FLYHFNQNSTWGELIRLIHIISYHMICITMAISSYACLLYCSIMNNLLMCLKVLEEEKLD 184
Query: 68 RTHTC 72
TC
Sbjct: 185VEETC 199
>BM270539
Length = 421
Score = 25.8 bits (55), Expect = 2.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 48 FYKGLNIVLCILILQKDKLIRTHT 71
F+KG+++ +C+LI K THT
Sbjct: 344 FFKGISLSVCMLIHLVHKYTHTHT 415
>TC227967 homologue to UP|Q84WX3 (Q84WX3) Auxin efflux carrier protein PIN1,
partial (56%)
Length = 1532
Score = 25.8 bits (55), Expect = 2.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 84 VFDANCYSYPPPLFRSLKIGELSKMPLFKKKKFSL 118
+ D+ +SY PLFR L ELS + L + + L
Sbjct: 969 LLDSKVFSYTLPLFRQLFPKELSHLSLLRNIMYIL 1073
>BU544588
Length = 414
Score = 25.4 bits (54), Expect = 3.8
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = -2
Query: 1 MSDELDWYEPNDSLRSDRFIVSLKDHSSTCN 31
+ + L+W + N S+ + + LK+ + CN
Sbjct: 221 VKEALEWLDDNQSVEKEEYEEKLKEVEAVCN 129
>TC208939 UP|Q39830 (Q39830) BiP isoform A, complete
Length = 2452
Score = 25.4 bits (54), Expect = 3.8
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 1 MSDELDWYEPNDSLRSDRFIVSLKDHSSTCN 31
+ + L+W + N S+ + + LK+ + CN
Sbjct: 1869 VKEALEWLDDNQSVEKEEYEEKLKEVEAVCN 1961
>TC212515 similar to GB|AAM15519.1|20198312|U78721 Expressed protein
{Arabidopsis thaliana;} , partial (72%)
Length = 796
Score = 25.4 bits (54), Expect = 3.8
Identities = 15/32 (46%), Positives = 16/32 (49%)
Frame = -3
Query: 69 THTCTLLHQLMGKSKVFDANCYSYPPPLFRSL 100
+HTCTLLH S N YS LF SL
Sbjct: 575 SHTCTLLH---NHSSTTFTNSYSTRDRLFSSL 489
>TC219579 similar to UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like
protein III, partial (11%)
Length = 751
Score = 25.4 bits (54), Expect = 3.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +1
Query: 38 ILSRHVVAGIFYKGLNIVLCILILQKDKLIRTHTCTLLHQLMGKSKVFDANCYSYPPPLF 97
++ VV GIF + V CIL++ + RT ++ K A Y+ PP F
Sbjct: 586 VIESTVVLGIFLAESDFVSCILLVTRSANERTKV-----KMATKKPTITAKIYAQFPPDF 750
>TC206661
Length = 541
Score = 25.0 bits (53), Expect = 5.0
Identities = 10/24 (41%), Positives = 14/24 (57%)
Frame = +3
Query: 77 QLMGKSKVFDANCYSYPPPLFRSL 100
QL + D NC + PPLF+S+
Sbjct: 264 QLSRSASWLDKNCSEFGPPLFQSV 335
>TC227068 similar to UP|Q6UV11 (Q6UV11) Pseudo-response regulator protein
(Fragment), partial (26%)
Length = 1737
Score = 25.0 bits (53), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (50%)
Frame = +1
Query: 46 GIFYKGLNIVLCILILQKDKLIRTHTCTLLHQLMGKSKV 84
G+F L I+LC++++ KD L+Q M K V
Sbjct: 1525 GVFM*NLGIILCVVLMYKDPGYSNLFIWNLNQFMWKEIV 1641
>BG043528
Length = 658
Score = 25.0 bits (53), Expect = 5.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 54 IVLCILILQKDKLIR-THTCTLLHQLMGKSKVFDANCYS 91
+++ I +LQ LI+ T C LLHQL+ ++ F YS
Sbjct: 507 LLMMIRVLQNHVLIQQTWMCFLLHQLLQRTICFPPC*YS 623
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.324 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,667,186
Number of Sequences: 63676
Number of extensions: 95705
Number of successful extensions: 694
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of query: 122
length of database: 12,639,632
effective HSP length: 98
effective length of query: 24
effective length of database: 6,399,384
effective search space: 153585216
effective search space used: 153585216
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0036b.1