BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0034b.4
(217 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC217419 weakly similar to UP|YG49_SCHPO (O60184) Protein C23E6.... 42 2e-04
BE609836 weakly similar to GP|1628463|emb| Men-4 {Silene latifol... 40 8e-04
TC233093 weakly similar to UP|Q9ZQE5 (Q9ZQE5) Expressed protein ... 40 0.001
TC215424 similar to UP|Q9MA04 (Q9MA04) F20B17.16, partial (26%) 39 0.001
TC229170 39 0.002
TC214214 weakly similar to UP|PRP1_SOYBN (P08012) Repetitive pro... 38 0.004
TC233960 similar to UP|OPSD_SEPOF (O16005) Rhodopsin, partial (10%) 38 0.004
BI973936 homologue to GP|4742001|gb| serine-threonine kinase 9 {... 37 0.007
BM886490 36 0.015
AI736672 weakly similar to GP|21284389|gb| acyl-CoA binding prot... 35 0.026
TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragme... 35 0.026
TC217698 similar to UP|Q89GY6 (Q89GY6) Blr6209 protein, partial ... 35 0.026
BM091938 35 0.026
AI736791 34 0.045
TC215827 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {A... 34 0.045
NP005385 DNA-directed RNA polymerase 34 0.058
TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragme... 33 0.076
TC226371 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich pr... 33 0.076
TC210062 GT-2 factor [Glycine max] 33 0.13
TC207093 33 0.13
>TC217419 weakly similar to UP|YG49_SCHPO (O60184) Protein C23E6.09 in
chromosome II, partial (3%)
Length = 692
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/65 (38%), Positives = 30/65 (45%), Gaps = 5/65 (7%)
Frame = +1
Query: 21 QNPNNYEDPNQFSYPRSQ-NPTNYQVPHQFSNQRPQ-NPNYFQVPH---QFSNQHPQNPN 75
Q+ Y P Q P ++ P YQ HQ +PQ P + Q P QF NQH Q P
Sbjct: 7 QSQPQYSPPQQHMQPHNEPQPLQYQPQHQTLQSQPQPQPGHIQQPQPQPQFQNQHFQYPA 186
Query: 76 YYPDP 80
YP P
Sbjct: 187RYPPP 201
>BE609836 weakly similar to GP|1628463|emb| Men-4 {Silene latifolia}, partial
(17%)
Length = 368
Score = 40.0 bits (92), Expect = 8e-04
Identities = 30/74 (40%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
Frame = +1
Query: 59 YFQVPH-QFSNQHPQNPNYYPDPNQ-YSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMV 116
Y+Q PH Q N +P NPN P PN Y++ F PN+ PS YPS PQ+ P
Sbjct: 61 YYQFPHLQNPNPNP-NPNPDPHPNNPYASAPPFTPNYAPS-DYTPYPSY-PQNPDPSPPT 231
Query: 117 RANF-PSVDGPEFP 129
+F PS P P
Sbjct: 232 APSFPPSSSNPNLP 273
Score = 33.9 bits (76), Expect = 0.058
Identities = 28/97 (28%), Positives = 38/97 (38%), Gaps = 5/97 (5%)
Frame = +1
Query: 21 QNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQNPNYYPDP 80
QNPN +PN +P NP +++ P PNY + +PQNP+ P
Sbjct: 82 QNPNPNPNPNPDPHPN--NP--------YASAPPFTPNYAPSDYTPYPSYPQNPDPSPPT 231
Query: 81 NQYSNQSSFVPNFHPSY-----GSVRYPSQTPQSSGY 112
SS PN P + + Y Q P S Y
Sbjct: 232 APSFPPSSSNPNLPPPFNPPFESNPPYQQQQPYFSPY 342
>TC233093 weakly similar to UP|Q9ZQE5 (Q9ZQE5) Expressed protein
(At2g15690/F9O13.24), partial (16%)
Length = 712
Score = 39.7 bits (91), Expect = 0.001
Identities = 34/138 (24%), Positives = 54/138 (38%), Gaps = 7/138 (5%)
Frame = +1
Query: 21 QNPNNYEDPNQFSYPRSQNPTNYQVP-HQFSNQRPQNPNYFQVPHQF---SNQHPQNPNY 76
Q + ++ P F+ P++ +P N P +QF + P VP F H N
Sbjct: 13 QQQHQHQQPQHFN-PQTHHPPNPPPPSNQFPHHHNHQPRQHNVPRPFLEHGGNHNNQWNP 189
Query: 77 YPDPNQYSN---QSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVRANFPSVDGPEFPEFST 133
P P Q N +S PNF P R+ +Q P + FP+ + +F +
Sbjct: 190 QPPPPQNHNFQTPTSQNPNFRPPTTPNRWNNQNPAAPNQWNPRSQGFPNSN--QFQNPNN 363
Query: 134 QVNLGDGSADNEVNEVTP 151
Q+N S + + P
Sbjct: 364 QLNNNQASIQAQTHPAPP 417
Score = 26.6 bits (57), Expect = 9.3
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +1
Query: 13 SSSYPISNQ--NPNNYEDPNQFSYPRSQNPTNYQVPH 47
S +P SNQ NPNN + NQ S +P PH
Sbjct: 319 SQGFPNSNQFQNPNNQLNNNQASIQAQTHPAPPPPPH 429
>TC215424 similar to UP|Q9MA04 (Q9MA04) F20B17.16, partial (26%)
Length = 1030
Score = 39.3 bits (90), Expect = 0.001
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Frame = +3
Query: 21 QNPNNYEDPNQFSYPRSQNPTNYQVPHQ----FSNQRPQNPNYFQVP----------HQF 66
QN Y DP+ S+P+ +NY Q ++ P +P+Y P +Q
Sbjct: 3 QNWGAYGDPSTSSFPQIPPNSNYHQNQQHHVPYAPPNPHHPHYPYPPPPPPPPPEASYQP 182
Query: 67 SNQHPQNPNYYPDPNQYSNQ 86
P P YYP NQYSNQ
Sbjct: 183PPPPPPAPMYYPSNNQYSNQ 242
Score = 33.1 bits (74), Expect = 0.100
Identities = 20/72 (27%), Positives = 30/72 (40%)
Frame = +3
Query: 3 PNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQV 62
P N +Y+ P + NP++ P YP P + +Q P P Y+
Sbjct: 54 PPNSNYHQNQQHHVPYAPPNPHHPHYP----YPPPPPPPPPEASYQPPPPPPPAPMYYPS 221
Query: 63 PHQFSNQHPQNP 74
+Q+SNQ P P
Sbjct: 222 NNQYSNQPPPPP 257
>TC229170
Length = 1025
Score = 38.9 bits (89), Expect = 0.002
Identities = 23/75 (30%), Positives = 36/75 (47%), Gaps = 2/75 (2%)
Frame = +2
Query: 6 HHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQ 65
HH+NT + P+S ++ NN + NQF +QVP F N + Q Q+P Q
Sbjct: 482 HHHNTSSRVVLPVSGRSYNNNNNNNQF----------HQVPAPFPNWQKQEEQQQQLPQQ 631
Query: 66 --FSNQHPQNPNYYP 78
+S + +N + P
Sbjct: 632 SGYSFDYVKNNGFLP 676
>TC214214 weakly similar to UP|PRP1_SOYBN (P08012) Repetitive proline-rich
cell wall protein 1 precursor, partial (53%)
Length = 857
Score = 37.7 bits (86), Expect = 0.004
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Frame = +1
Query: 2 DPNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQ 61
+P + + N SY + NP Y+ P S S NP Y+ P NP ++
Sbjct: 316 NPPGYKAPSYNPPSYKSPSYNPPVYKAPVYKS--PSYNPPGYKAPSY-------NPPVYK 468
Query: 62 VPHQFSNQHPQ---NPNYYPDPN----QYSNQSSFVPNFHPSYGSVRYPSQTPQSS 110
P S + NP Y P+ Y P+++P YG YP P S+
Sbjct: 469 PPSYNSPDYKPPSYNPPVYKSPSYNSPDYKTPDYKPPSYNPPYGKSPYPKYPPGSN 636
>TC233960 similar to UP|OPSD_SEPOF (O16005) Rhodopsin, partial (10%)
Length = 862
Score = 37.7 bits (86), Expect = 0.004
Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 3/127 (2%)
Frame = +2
Query: 17 PISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQNPNY 76
P +Q P P Q YP P Y P + +Q P Y PQ
Sbjct: 506 PYGSQAPYGSGYPPQGGYP----PQGYPAP--YGSQAPYGSGY----------PPQGG-- 631
Query: 77 YPDPNQYSNQSSFVPNFHP--SYGSVRYPSQTPQSSGYMPMVRANFPSVDG-PEFPEFST 133
YP +QY +Q+ + + P Y YPS SGY P + +P G P ++ +
Sbjct: 632 YPPADQYGSQAPYGSGYPPQGGYPPQGYPSPQAYGSGYPP--QGGYPPQGGYPPADQYGS 805
Query: 134 QVNLGDG 140
Q G G
Sbjct: 806 QAPYGSG 826
>BI973936 homologue to GP|4742001|gb| serine-threonine kinase 9 {Takifugu
rubripes}, partial (1%)
Length = 405
Score = 37.0 bits (84), Expect = 0.007
Identities = 25/93 (26%), Positives = 41/93 (43%), Gaps = 7/93 (7%)
Frame = +1
Query: 32 FSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQNPNY-------YPDPNQYS 84
F P SQNP N+++P P++++NQ+ PN +P+PNQ+
Sbjct: 13 FQTPTSQNP-NFRIP--------------TTPNRWNNQNLATPNQWNPRSQGFPNPNQFQ 147
Query: 85 NQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVR 117
N ++ + N S S P+ PQ + R
Sbjct: 148 NPNNQLNNNQTSVQSQASPAPPPQPPSITDLTR 246
>BM886490
Length = 420
Score = 35.8 bits (81), Expect = 0.015
Identities = 30/102 (29%), Positives = 41/102 (39%), Gaps = 9/102 (8%)
Frame = +3
Query: 43 YQVPHQFSNQRPQNPNYFQVP-----HQFSNQHPQNPNYYPDPNQY----SNQSSFVPNF 93
YQVP Q Q P+Y+ +P Q NQ PQN Y+P Y S SS
Sbjct: 18 YQVPAPNVRQATQRPHYYLMPTPLPNPQAVNQLPQN-QYWPSDLLYRIPQSTSSSQATQS 194
Query: 94 HPSYGSVRYPSQTPQSSGYMPMVRANFPSVDGPEFPEFSTQV 135
P ++Y Q ++P + V P+ P +QV
Sbjct: 195 PPVQQFLQYQQLQHQQQQWLPQLPPQQVQVPPPQPPSAQSQV 320
>AI736672 weakly similar to GP|21284389|gb| acyl-CoA binding protein
{Arabidopsis thaliana}, partial (11%)
Length = 419
Score = 35.0 bits (79), Expect = 0.026
Identities = 21/59 (35%), Positives = 29/59 (48%)
Frame = +2
Query: 56 NPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMP 114
NPN P + HP P+ P N++S+ +SF P F PS +PS+T S P
Sbjct: 95 NPNNTNFPLSRVSFHPPWPSGSPSSNRFSS-ASFSPTFSPSSFPSSFPSKTTISPSRAP 268
>TC206202 UP|Q99367 (Q99367) DNA-directed RNA polymerase (Fragment) ,
complete
Length = 1826
Score = 35.0 bits (79), Expect = 0.026
Identities = 35/135 (25%), Positives = 54/135 (39%), Gaps = 3/135 (2%)
Frame = +3
Query: 3 PNNHHYNTQNSSSYPIS-NQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQ 61
P + Y+ + S P S + +P + P+ S +PT+ P +P Y
Sbjct: 783 PTSPAYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 953
Query: 62 VPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVRANFP 121
+S P +P+Y P YS S PSY S P+ +P S GY P + P
Sbjct: 954 TSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPGYSPTSPSYSP 1121
Query: 122 SVD--GPEFPEFSTQ 134
+ P P ++ Q
Sbjct: 1122TSPSYSPTSPSYNPQ 1166
Score = 32.3 bits (72), Expect = 0.17
Identities = 26/112 (23%), Positives = 45/112 (39%), Gaps = 4/112 (3%)
Frame = +3
Query: 3 PNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQV 62
P + YN Q++ P +P++ + S +PT+ + P +P+Y
Sbjct: 1140 PTSPSYNPQSAKYSPSLAYSPSS----PRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPS 1307
Query: 63 PHQFSNQHPQNP----NYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSS 110
+S P N +Y P Q+S + + P+ P Y TPQ+S
Sbjct: 1308 SPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPS-QPGYSPSSTSQYTPQTS 1460
Score = 31.6 bits (70), Expect = 0.29
Identities = 25/81 (30%), Positives = 32/81 (38%), Gaps = 2/81 (2%)
Frame = +3
Query: 54 PQNPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYM 113
P +P Y +S P +P Y P YS S PSY S PS +P S Y
Sbjct: 720 PTSPGYSPTSPTYS---PSSPGYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYS 887
Query: 114 PMVRANFPS--VDGPEFPEFS 132
P + P+ P P +S
Sbjct: 888 PTSPSYSPTSPAYSPTSPAYS 950
>TC217698 similar to UP|Q89GY6 (Q89GY6) Blr6209 protein, partial (5%)
Length = 865
Score = 35.0 bits (79), Expect = 0.026
Identities = 27/89 (30%), Positives = 34/89 (37%)
Frame = +2
Query: 3 PNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQV 62
P +Y + + P N + P Q Y Q P NY P Q +Q PQN
Sbjct: 77 PPQQNYGMTSQNYTPQQNYGQASPNYPPQQKY--GQAPQNYP-PQQNFDQAPQN------ 229
Query: 63 PHQFSNQHPQNPNYYPDPNQYSNQSSFVP 91
+PQ Y P QY+ Q SF P
Sbjct: 230 -------YPQQQRYGPSSPQYAQQQSFGP 295
>BM091938
Length = 421
Score = 35.0 bits (79), Expect = 0.026
Identities = 31/135 (22%), Positives = 47/135 (33%), Gaps = 5/135 (3%)
Frame = +2
Query: 3 PNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQV 62
P ++Y++ S P + P Y P P + PH + P +P+
Sbjct: 35 PKPYYYHSPPPPSPPPPKKKPYYYHSP----------PPPHPYPHPHPHPYP-HPHPHPH 181
Query: 63 PHQFSNQHPQNPNYYPDP-----NQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVR 117
PH + HP P YP P Y S P H + + +P S P
Sbjct: 182 PHPHPHPHPHPPYVYPSPPPPPKKPYKYPSPPPPVHHYPHPHPPFVHYSPPPSPKKPY-- 355
Query: 118 ANFPSVDGPEFPEFS 132
+PS P P ++
Sbjct: 356 -KYPSPPPPVHPPYT 397
>AI736791
Length = 389
Score = 34.3 bits (77), Expect = 0.045
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Frame = +1
Query: 20 NQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQ---NPNYFQVPHQFSNQHPQNPNY 76
NQNP S QN T +PH+ +Q P + N+ PH +QHP NP
Sbjct: 70 NQNP---------SLSLLQNLTFPYIPHKSLSQNPSPSTDFNHHHHPHHHHHQHPFNP-- 216
Query: 77 YPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVRANFPS 122
S P +PS P+Q P ++ R + PS
Sbjct: 217 ------IGGPXSQAPRANPS------PNQKPNTNSSSSTARTSNPS 318
>TC215827 similar to GB|AAP37794.1|30725544|BT008435 At3g63460 {Arabidopsis
thaliana;} , partial (18%)
Length = 1713
Score = 34.3 bits (77), Expect = 0.045
Identities = 22/73 (30%), Positives = 29/73 (39%)
Frame = +1
Query: 56 NPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPM 115
N NY+Q P QH + YPD S Q F P + YG+ P Q Q + ++P
Sbjct: 271 NSNYYQEPVTTQVQHGVSGIQYPD----SYQQPFDPRYGRGYGAPTPPQQPQQPNLFVPP 438
Query: 116 VRANFPSVDGPEF 128
P F
Sbjct: 439 QTTQVVQTPQPTF 477
>NP005385 DNA-directed RNA polymerase
Length = 2934
Score = 33.9 bits (76), Expect = 0.058
Identities = 26/80 (32%), Positives = 33/80 (40%), Gaps = 1/80 (1%)
Frame = +1
Query: 54 PQNPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYM 113
P +P+Y +S P +P+Y P YS S PSY S PS +P S Y
Sbjct: 2470 PTSPSYSLTSPSYS---PTSPSYSPTSPSYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYN 2637
Query: 114 PMVRANFPSVD-GPEFPEFS 132
P PS+ P P S
Sbjct: 2638 PQSAKYSPSLAYSPSSPRLS 2697
Score = 32.3 bits (72), Expect = 0.17
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 3 PNNHHYNTQNSSSYPIS-NQNPNNYEDPNQFSYPRSQ---NPTNYQVPHQFSNQRPQNPN 58
P + Y+ + S P S + NP + + +Y S +PT+ + P +P+
Sbjct: 2575 PTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPTSPNYSPTSPSYSPTSPS 2754
Query: 59 YFQVPHQFSNQHPQNP----NYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSS 110
Y +S P N +Y P Q+S + + P+ P Y TPQ+S
Sbjct: 2755 YSPSSPTYSPSSPYNSGVSPDYSPTSPQFSPSAGYSPS-QPGYSPSSTSQDTPQTS 2919
Score = 31.6 bits (70), Expect = 0.29
Identities = 20/61 (32%), Positives = 27/61 (43%)
Frame = +1
Query: 54 PQNPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYM 113
P +P Y +S P +P+Y P YS S + P+Y S PS +P S Y
Sbjct: 2302 PSSPGYSPTSPAYS---PTSPSYSPTSPAYSPTSPAYSSTSPAY-SPTSPSYSPTSPAYS 2469
Query: 114 P 114
P
Sbjct: 2470 P 2472
>TC206203 UP|Q99366 (Q99366) DNA-directed RNA polymerase (Fragment) , partial
(96%)
Length = 2604
Score = 33.5 bits (75), Expect = 0.076
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 3/133 (2%)
Frame = +1
Query: 3 PNNHHYNTQNSSSYPIS-NQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQ 61
P + Y+ + S P S + +P + P+ S +PT+ P +P Y
Sbjct: 1240 PTSPAYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1410
Query: 62 VPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVRANFP 121
+S P +P+Y P YS S PSY S PS +P S Y P A P
Sbjct: 1411 TSPAYS---PTSPSYSPTSPSYSPTS-------PSY-SPTSPSYSPTSPSYSPTSPAYSP 1557
Query: 122 SVDG--PEFPEFS 132
+ G P P +S
Sbjct: 1558 TSPGYSPTSPSYS 1596
Score = 32.3 bits (72), Expect = 0.17
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = +1
Query: 37 SQNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPS 96
S +PT+ + P +P+Y +S P +P Y P YS S PS
Sbjct: 1462 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS---PTSPGYSPTSPSYSPTS-------PS 1611
Query: 97 YGSVRYPSQTPQSSGYMP 114
Y S PS PQS+ Y P
Sbjct: 1612 Y-SPTSPSYNPQSAKYSP 1662
Score = 32.3 bits (72), Expect = 0.17
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Frame = +1
Query: 39 NPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYG 98
+PT+ P +P Y +S P +P+Y P YS S PSY
Sbjct: 1195 SPTSPTYSPSSPGYSPTSPAYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSY- 1362
Query: 99 SVRYPSQTPQSSGYMPMVRANFPSVD--GPEFPEFS 132
S P+ +P S Y P A P+ P P +S
Sbjct: 1363 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1470
Score = 32.3 bits (72), Expect = 0.17
Identities = 26/112 (23%), Positives = 45/112 (39%), Gaps = 4/112 (3%)
Frame = +1
Query: 3 PNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQV 62
P + YN Q++ P +P++ + S +PT+ + P +P+Y
Sbjct: 1618 PTSPSYNPQSAKYSPSLAYSPSS----PRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPS 1785
Query: 63 PHQFSNQHPQNP----NYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSS 110
+S P N +Y P Q+S + + P+ P Y TPQ+S
Sbjct: 1786 SPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPS-QPGYSPSSTSQYTPQTS 1938
>TC226371 similar to UP|Q9M0H8 (Q9M0H8) Predicted proline-rich protein,
partial (10%)
Length = 1099
Score = 33.5 bits (75), Expect = 0.076
Identities = 40/154 (25%), Positives = 58/154 (36%), Gaps = 3/154 (1%)
Frame = +1
Query: 10 TQNSSSYPISNQNPNNYEDPNQFSYPRSQNPTNYQVPHQFSNQRPQNPNYFQVPHQFSNQ 69
+Q + S P+ Q ++Y+ P Q P P Q Q Q Q P S
Sbjct: 133 SQVTPSPPV--QQFSHYQQPQQQQQP----------PQQQQQQWSQQVQPSQPPPMQSQV 276
Query: 70 HPQNPNYYP--DPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPMVRANFPSVDGPE 127
P +PN YP PNQ +N S P++T +S M M + P P+
Sbjct: 277 RPSSPNVYPPYQPNQATNPS---------------PAETLPNSMAMQMPYSGVP----PQ 399
Query: 128 FPEFSTQVNLGDGSADNEV-NEVTPKSKKTHAPA 160
+ + G G A V + P+ K+ PA
Sbjct: 400 GSNRADAIPYGYGGAGRTVPQQPPPQQMKSSFPA 501
>TC210062 GT-2 factor [Glycine max]
Length = 712
Score = 32.7 bits (73), Expect = 0.13
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +3
Query: 56 NPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHPSYGSVRYPSQTPQSSGYMPM 115
N N VP S PQ+ P S + +P+F PS + +P+QTP +
Sbjct: 33 NNNNTTVPSTTSLPMPQSILNITPP---STLNITIPSFPPSNPTTYFPTQTPNPTSNN-- 197
Query: 116 VRANFPS-VDGPEFPEFSTQVNLGDGSADNEVNEVTPKSK 154
N PS + P FP F + L + S+ + +E TP ++
Sbjct: 198 -NNNPPSTITPPSFPNFPADL-LSNSSSSSTSSEETPTTE 311
>TC207093
Length = 863
Score = 32.7 bits (73), Expect = 0.13
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 54 PQNPNYFQVPHQFSNQHPQNPNYYPDPNQYSNQSSFVPNFHP 95
P NPN P+ N +P NPN YP+PN Y + PN HP
Sbjct: 122 PSNPN----PNPNPNPNP-NPNPYPNPNPY-----YDPNPHP 217
Score = 29.3 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +2
Query: 2 DPNNHHYNTQNSSSYPISNQNPNNYEDPNQFSYPRS 37
+PN + N + YP NPN Y DPN YP++
Sbjct: 134 NPNPNPNPNPNPNPYP----NPNPYYDPNPHPYPQN 229
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.311 0.129 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,536,656
Number of Sequences: 63676
Number of extensions: 241853
Number of successful extensions: 1430
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of query: 217
length of database: 12,639,632
effective HSP length: 93
effective length of query: 124
effective length of database: 6,717,764
effective search space: 833002736
effective search space used: 833002736
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0034b.4