BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0034b.2
(494 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM893403 35 0.10
TC207896 GB|BAA13184.1|1498170|D86929 uricase {Glycine max;} , c... 33 0.38
AI736730 similar to GP|20805202|dbj OJ1294_F06.10 {Oryza sativa ... 32 0.65
TC231716 31 1.1
BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycopr... 31 1.1
TC206162 homologue to UP|Q8LSK7 (Q8LSK7) Auxin-regulated protein... 31 1.1
TC216882 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%) 31 1.1
TC210080 weakly similar to UP|Q8VZH8 (Q8VZH8) AT4g30550/F17I23_1... 31 1.4
TC232439 similar to UP|Q9JJL0 (Q9JJL0) Haploid specific alanine-... 31 1.4
TC212535 31 1.4
TC219874 similar to GB|AAP42732.1|30984538|BT008719 At4g36530 {A... 31 1.4
BE023012 30 1.9
TC227216 GB|AAA33994.1|170031|SOYNOD35G nodulin 35 {Glycine max;... 30 1.9
TC219110 protein kinase 2 30 1.9
AW099978 homologue to PIR|H86466|H864 protein F23M19.7 [imported... 30 2.5
TC216486 30 2.5
BG839904 30 3.2
TC216800 weakly similar to UP|Q9LRQ7 (Q9LRQ7) Anthocyanin 5-arom... 30 3.2
BE331714 30 3.2
BE660115 weakly similar to GP|15866282|gb| DWARF8 {Zea mays subs... 30 3.2
>BM893403
Length = 419
Score = 34.7 bits (78), Expect = 0.10
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +3
Query: 90 PLHATHLPKTIMTSNLPHASNTRH--PSSFSPSPIKTLLPHSHPFLRPLFTSLIAYQTPS 147
P + L T +LP S + P+SF SPI T++P PF PLF A P
Sbjct: 192 PAKSKDLSTTTPPPSLPPCSARKALPPASFPISPI-TMVPFFLPFFAPLFPLFYAILLPF 368
Query: 148 AHFRSGAVAYHP 159
+ FR G +HP
Sbjct: 369 SFFRCG-FHHHP 401
>TC207896 GB|BAA13184.1|1498170|D86929 uricase {Glycine max;} , complete
Length = 1348
Score = 32.7 bits (73), Expect = 0.38
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -3
Query: 85 VRSNSPLHATHLPKTIMTSNLPHASNTRHPSSFSPSPIKTLLPHSHPFLRPLFTSLI 141
+R S HA + + LPHA RH +F P P+ L P H L LF +L+
Sbjct: 194 IRKESDPHAPLHNEVLPLPRLPHA---RHSHAFFPVPLLELEPFHHFLLSHLFRTLL 33
>AI736730 similar to GP|20805202|dbj OJ1294_F06.10 {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 373
Score = 32.0 bits (71), Expect = 0.65
Identities = 27/104 (25%), Positives = 42/104 (39%), Gaps = 13/104 (12%)
Frame = +2
Query: 96 LPKTIMTSNLPHASNT------RHPSSFSPS----PIKTLL---PHSHPFLRPLFTSLIA 142
+P+ + N PH SN + P ++ P P++ L PH H +PL +S A
Sbjct: 71 IPRLLRLPNPPHHSNIPLLPLLQLPQNYPPQTQLPPLQRRLHPRPHPHHHQKPLKSSA*A 250
Query: 143 YQTPSAHFRSGAVAYHPFRYPLFTSYSGESHCPYLCITHILIFS 186
TPS H ++ +P + P LC IL +
Sbjct: 251 STTPSPHV---TIS*KDSCFPTIPLSAPSKFAPALCFLRILFLT 373
>TC231716
Length = 949
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 206 SSSSSGSDPDATAAGGLRLEAPEIPPYRLKTYAT 239
SSSS GS PD ++ G++L+ E+ +RL T+AT
Sbjct: 819 SSSSLGSSPDDNSSDGIKLDENEVWQFRL-TFAT 917
>BQ080060 homologue to PIR|C29356|C29 hydroxyproline-rich glycoprotein (clone
Hyp2.13) - kidney bean (fragment), partial (38%)
Length = 422
Score = 31.2 bits (69), Expect = 1.1
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = +2
Query: 45 YFKTLLNLYPPHVAAPRDASVTSISLFLRNRHFPFHNRPIVRSNSPLHAT---HLPKTIM 101
+ T +L+P H+ TS L H P H+ I+ ++ H T HLP TI
Sbjct: 116 HLPTTTSLHPHHLHHHHLLITTSHLL-----HHPHHHHLIITTSHHHHQTHHHHLP-TIT 277
Query: 102 TSNLPHASNTRHP--SSFSPSPIKTLLPHSHPFLRPLFTSLIAYQ 144
H HP +S + I+ LL H + P T+L+ +Q
Sbjct: 278 DHPHHHLHRPHHPITTSHLLTTIRVLLHHLPCLILPTTTNLLHHQ 412
>TC206162 homologue to UP|Q8LSK7 (Q8LSK7) Auxin-regulated protein, partial
(69%)
Length = 1117
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = -3
Query: 90 PLHATHLPKTIMTSNLPHASNTRHPSSFSPSPIKTLLPHSH--PFLRPLFTSLIAYQTPS 147
P H T L + TSN P + HP SP + LLP SH +L LF Y
Sbjct: 584 PAHPTTLGSSCTTSNPPCVNKEHHPC----SPSRKLLPCSHCCYYLWRLFRPHCCYSFEQ 417
Query: 148 AHFRSGAVAYHPFRYPLFTSYSG 170
F ++ P PL + G
Sbjct: 416 CSF*KTSLVATPPLVPLQVALLG 348
>TC216882 similar to UP|Q9AYT8 (Q9AYT8) Mangrin, partial (68%)
Length = 1104
Score = 31.2 bits (69), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 92 HATHLPKTIMTSNLPHASNTRHPSSFSPSPIKTLLPHSHP 131
+++H KTI S+ +T+ S F+PSP K LP + P
Sbjct: 79 YSSHALKTIPFSSFVKPVSTKPTSFFTPSPTKPFLPFTSP 198
>TC210080 weakly similar to UP|Q8VZH8 (Q8VZH8) AT4g30550/F17I23_110, partial
(45%)
Length = 693
Score = 30.8 bits (68), Expect = 1.4
Identities = 21/64 (32%), Positives = 29/64 (44%), Gaps = 10/64 (15%)
Frame = -1
Query: 185 FSFLSLHCLLKMASNPTSPN--HSSSSSGSDPDAT--------AAGGLRLEAPEIPPYRL 234
F+ +SL C T P+ SSSSG P AT ++ + + PE PPY
Sbjct: 345 FTHVSLPCASLQLPVITKPS*RPKSSSSGKSPHATLYTSHVSPSSASILTKTPEYPPYTF 166
Query: 235 KTYA 238
TY+
Sbjct: 165 FTYS 154
>TC232439 similar to UP|Q9JJL0 (Q9JJL0) Haploid specific alanine-rich acidic
protein, partial (6%)
Length = 709
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/86 (31%), Positives = 33/86 (37%)
Frame = +2
Query: 96 LPKTIMTSNLPHASNTRHPSSFSPSPIKTLLPHSHPFLRPLFTSLIAYQTPSAHFRSGAV 155
+P + T N TRH S + +LLP H Y PS H A
Sbjct: 158 IPHYVSTDNRSATEPTRHSFMSLASLVTSLLPFPH-----------NYSLPSTH----AP 292
Query: 156 AYHPFRYPLFTSYSGESHCPYLCITH 181
+HPF P S SHC +L TH
Sbjct: 293 PFHPFAAP--NPPSTLSHC-FLSDTH 361
>TC212535
Length = 757
Score = 30.8 bits (68), Expect = 1.4
Identities = 26/84 (30%), Positives = 35/84 (40%), Gaps = 9/84 (10%)
Frame = +1
Query: 330 FVQTVLRDINAAPCQLHPNAWAFIRCFEILSAAVGIAPSPTSFFYLYDVDPKSIKNKGWI 389
F VL N AP QLHPN I+ F IL + P+ F + + + + WI
Sbjct: 214 FHHDVLHIPNTAPSQLHPNG*VAIQAFCILYRFFRMEPTTGLFLHHF-------QTRKWI 372
Query: 390 SLK----ARAGRKC-----LHPHK 404
L +R + C LHP K
Sbjct: 373 KLNVCH*SRIRKDCCLGYSLHPTK 444
>TC219874 similar to GB|AAP42732.1|30984538|BT008719 At4g36530 {Arabidopsis
thaliana;} , partial (56%)
Length = 984
Score = 30.8 bits (68), Expect = 1.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 66 TSISLFLRNRHFPFHNRPIVRSN 88
T + LFL+ HFPF +R IVR N
Sbjct: 235 TFVELFLQKFHFPFSHRQIVRQN 167
>BE023012
Length = 408
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 3/63 (4%)
Frame = -1
Query: 151 RSGAVAYHPFRYPLFTSYSGESHCPYLCITHILIFSFLSLHC---LLKMASNPTSPNHSS 207
RS + Y+P + L T Y HC Y + +L+ + C L K+ T PN +
Sbjct: 396 RSQLLLYNP*VWYL*TVYLQLHHCSYTLLVPVLVLPMIYHRCLDHLPKLGLQQTLPNRTH 217
Query: 208 SSS 210
SS+
Sbjct: 216 SSA 208
>TC227216 GB|AAA33994.1|170031|SOYNOD35G nodulin 35 {Glycine max;} , complete
Length = 1267
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = -1
Query: 87 SNSPLHATHLPKTIMTSNLPHASNTRHPSSFSPSPIKTLLPHSHPFLRPLFTSLIAY 143
+++PLH LP LP + RH + P P+ L P H L LF +L+ +
Sbjct: 211 AHAPLHNEVLP-------LPRLPHARHSHALFPVPLFELEPFYHFLLSHLFGTLLVF 62
>TC219110 protein kinase 2
Length = 668
Score = 30.4 bits (67), Expect = 1.9
Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 13/61 (21%)
Frame = -1
Query: 333 TVLRDINAAPCQL-------HPNAWAFIRCFEILSA------AVGIAPSPTSFFYLYDVD 379
++L ++ PC L H AW + CF + + + + P P FYL DVD
Sbjct: 377 SLLTSVDFCPCFLNDLHDFFHTLAWLVLLCFLVTPSFSLNYLSWQVLPKPKVLFYLRDVD 198
Query: 380 P 380
P
Sbjct: 197 P 195
>AW099978 homologue to PIR|H86466|H864 protein F23M19.7 [imported] -
Arabidopsis thaliana, partial (7%)
Length = 399
Score = 30.0 bits (66), Expect = 2.5
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 21/103 (20%)
Frame = +1
Query: 90 PLHAT--HLPKTIMTSNLPHASNTRHPSSFS--------------PSPIKTLLPHSHPFL 133
PLH LP+ + +LPH N HP FS PS I L P SH +
Sbjct: 85 PLHPLLHSLPRPLPLPHLPHRHNNNHPPPFSLSILLFHNQRLRRRPSSILELRP-SHTYW 261
Query: 134 RPLFTSLIAYQT-----PSAHFRSGAVAYHPFRYPLFTSYSGE 171
+ S + PS+ ++ + +P PL YS E
Sbjct: 262 SSISDSRLPTDADHTTPPSSLHQTAKIPPYP-ENPLIKQYSAE 387
>TC216486
Length = 1383
Score = 30.0 bits (66), Expect = 2.5
Identities = 21/87 (24%), Positives = 37/87 (42%)
Frame = +3
Query: 201 TSPNHSSSSSGSDPDATAAGGLRLEAPEIPPYRLKTYATLPLPVQIAPTHEAIDQPSIFQ 260
T + ++ D T GLR EA E+P ++ T PV A + + + P +
Sbjct: 351 TGMGNMNNFRSQDHHETLQHGLRFEAYEVPKPPMQPKVT---PVSFASSADIVPVPEVLS 521
Query: 261 NSDLIVQFVNSLGGLSNDDEFSAKLRI 287
+ + ++S+G S KLR+
Sbjct: 522 SRE--THHISSVGSTSEAGSSELKLRL 596
>BG839904
Length = 712
Score = 29.6 bits (65), Expect = 3.2
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 106 PHASNTRHPSSFSPSPIKTLLPHSHPFLRPLFTSLIAYQTPSAHFRSGAVAYHPFRYPLF 165
PH + T HPS+F + +L HSH FL PL FR + Y P +PL
Sbjct: 193 PHITLTIHPSAFFKAFPFSLKGHSH-FLVPL------------TFRDNSFLYGPLYFPLL 333
Query: 166 T 166
+
Sbjct: 334 S 336
>TC216800 weakly similar to UP|Q9LRQ7 (Q9LRQ7) Anthocyanin 5-aromatic
acyltransferase/benzoyltransferase-like protein, partial
(24%)
Length = 2180
Score = 29.6 bits (65), Expect = 3.2
Identities = 28/80 (35%), Positives = 37/80 (46%)
Frame = +1
Query: 87 SNSPLHATHLPKTIMTSNLPHASNTRHPSSFSPSPIKTLLPHSHPFLRPLFTSLIAYQTP 146
SN+P + L T + S P + HPS SP+P +T P P P TS + QT
Sbjct: 478 SNTP--SPSLSTTSLLSPAPSHGHFTHPSPSSPTPPETQSPSESP--NPTQTSTPSLQT- 642
Query: 147 SAHFRSGAVAYHPFRYPLFT 166
S + A +P YPL T
Sbjct: 643 SQKLTTTAET*YP-TYPLPT 699
>BE331714
Length = 433
Score = 29.6 bits (65), Expect = 3.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 173 HCPYLCITHILIFSFLSLHCLLKMASNPTSPNHSS 207
HCPY+ H+L F+ L HC + + P H S
Sbjct: 242 HCPYVHPRHLLHFTILYEHCTCQC*NWPWPQQHGS 138
>BE660115 weakly similar to GP|15866282|gb| DWARF8 {Zea mays subsp. mays},
partial (5%)
Length = 585
Score = 29.6 bits (65), Expect = 3.2
Identities = 27/61 (44%), Positives = 36/61 (58%), Gaps = 7/61 (11%)
Frame = +1
Query: 176 YLCITHILI--FSFLSLHCL---LKMASNPTSPNHSSSSSGS-DPDATAAG-GLRLEAPE 228
YL ++ IL FSF+S H L +KMAS +S N SSS S S D D AG G ++ + E
Sbjct: 58 YLSLSTILFN*FSFISFHLLS*SVKMAS--SSSNGSSSGSKSWDIDGDLAGFGYKVRSSE 231
Query: 229 I 229
+
Sbjct: 232 L 234
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.138 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,219,041
Number of Sequences: 63676
Number of extensions: 479855
Number of successful extensions: 3543
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 3475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3535
length of query: 494
length of database: 12,639,632
effective HSP length: 101
effective length of query: 393
effective length of database: 6,208,356
effective search space: 2439883908
effective search space used: 2439883908
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0034b.2