BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.8
(1310 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, co... 425 e-119
TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete 418 e-117
TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, ... 192 8e-49
TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Frag... 166 5e-41
TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polypro... 156 5e-38
BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vi... 150 5e-36
CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {V... 149 6e-36
BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Ara... 146 7e-35
TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, parti... 137 3e-32
AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza ... 134 2e-31
BM307983 130 4e-30
TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 ... 129 6e-30
CO982036 126 7e-29
TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotr... 116 8e-28
BM086359 117 3e-26
TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%) 117 3e-26
BU548243 117 4e-26
BU764568 96 2e-25
BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberos... 113 6e-25
BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {... 74 6e-25
>TC204438 homologue to UP|Q84VH6 (Q84VH6) Gag-pol polyprotein, complete
Length = 4734
Score = 425 bits (1093), Expect = e-119
Identities = 243/749 (32%), Positives = 396/749 (52%), Gaps = 3/749 (0%)
Frame = +1
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN IVERK++ + AR +L LP W+ A+ A Y+ NR+ ++I
Sbjct: 2551 PQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIW 2730
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
P + + IFG+ C++ R+K DP++ IFLG+ +++ + ++ ++R +
Sbjct: 2731 KGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVME 2910
Query: 674 SRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQVIAPR 733
S NV + P + D + + V T ++ E N+ + P
Sbjct: 2911 SINVVVDDLTPARKKDVE-----------EDVRTSGDNVADTAKSAENAENSDSATDEPN 3057
Query: 734 TSQRIRKPPSYLQDYHCT--LLSSDSVPITSSSTGINYPLSKVLSYDHLNPKYQSFVMNI 791
+Q ++P +Q H ++ + +T+ S I + FV
Sbjct: 3058 INQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSC------------FV--- 3192
Query: 792 SSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQD 851
S +EP EA+ E W AM +E+E +RN+ W LV +P + IG KW++K K ++
Sbjct: 3193 -SKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEE 3369
Query: 852 GSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFL 911
G I R KARLV +GYTQ+EGVDF +TF+PVA++ ++R++L + + L+Q+DV +AFL
Sbjct: 3370 GVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFL 3549
Query: 912 HASLDEQIYMTIPQGLVC-NKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNA 970
+ L+E+ Y+ P+G V + V L+K+LYGLKQA R W+ L+ L + GY++
Sbjct: 3550 NGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGI 3729
Query: 971 DHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEI 1030
D TL++K + + +Y DD++ G ++ + +F + +GE YFLGL++
Sbjct: 3730 DKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQV 3909
Query: 1031 ARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGR 1090
+ I L+Q KYA ++ G + TP KL + D YR ++G
Sbjct: 3910 KQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGS 4089
Query: 1091 LLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTA 1150
LLYL +RPDIT+AV +++ + P H R+LKY+ G+ G+ Y S + L
Sbjct: 4090 LLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVG 4269
Query: 1151 FSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWL 1210
+ D+DWAG D RKS +G C +LG +LISW SKKQ+ S S+ E+EY A ++ ++ W+
Sbjct: 4270 YCDADWAGSADDRKSTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWM 4449
Query: 1211 HYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLP 1270
+L++ N Q T ++ DN SA++I+ NP H RTKHI++ H +R+ + ++ L
Sbjct: 4450 KQMLKEYNVEQDVMT-LYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEH 4626
Query: 1271 ISTTLQTADVFTKSLTPAPFKTCISKLGM 1299
+ T Q AD+FTK+L F+ KLG+
Sbjct: 4627 VDTEEQIADIFTKALDANQFEKLRGKLGI 4713
>TC204439 UP|Q84VI4 (Q84VI4) Gag-pol polyprotein, complete
Length = 4731
Score = 418 bits (1075), Expect = e-117
Identities = 241/748 (32%), Positives = 400/748 (53%), Gaps = 2/748 (0%)
Frame = +1
Query: 554 PQQNAIVERKHQHVISVARALLFQAHLPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQIL 613
PQQN IVERK++ + AR +L LP W+ A+ A Y+ NR+ ++I
Sbjct: 2548 PQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIW 2727
Query: 614 YNTVPDITNLKIFGTLCFVSTLTSHRKKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISI 673
P + + IFG+ C++ R+K DP++ IFLG+ +++ + ++ ++R +
Sbjct: 2728 KGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVME 2907
Query: 674 SRNVTFHEHNPFKPLDSDLTPTQAFPTTLPPIFDDDIPVPATVQAQEPPVNNQNQVIAPR 733
S NV + +P + D + + + + E +N ++ R
Sbjct: 2908 SINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDK----R 3075
Query: 734 TSQRIRK-PPSYLQDYHCTLLSSDSVPITSSSTGINYPLSKVLSYDHLNPKYQSFVMNIS 792
+S RI+K P L ++ + +T+ S + +++S FV
Sbjct: 3076 SSTRIQKMHPKEL------IIGDPNRGVTTRSREV-----EIVS-------NSCFV---- 3189
Query: 793 SSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQDG 852
S +EP EA+ E W AM +E+E +RN+ W LV +P + IG KW++K K ++G
Sbjct: 3190 SKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEG 3369
Query: 853 SIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFLH 912
I R KARLV +GYTQ+EGVDF +TF+PVA++ ++R++L + + L+Q+DV +AFL+
Sbjct: 3370 VITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLN 3549
Query: 913 ASLDEQIYMTIPQGLV-CNKANQVCLLQKSLYGLKQASRQWFNTLSASLKKLGYKQSNAD 971
L+E++Y+ P+G + V L+K+LYGLKQA R W+ L+ L + GY++ D
Sbjct: 3550 GYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGID 3729
Query: 972 HTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIA 1031
TL++K + + +Y DD++ G ++ + +F + +GE YFLGL++
Sbjct: 3730 KTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVK 3909
Query: 1032 RSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRL 1091
+ I L+Q +YA ++ G + TP KL + D YR ++G L
Sbjct: 3910 QMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSL 4089
Query: 1092 LYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAF 1151
LYL +RPDIT+AV +++ + P H R+LKY+ G+ G+ Y S+ L +
Sbjct: 4090 LYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGY 4269
Query: 1152 SDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLH 1211
D+DWAG D RKS +G C +LG++LISW SKKQ+ S S+ E+EY A ++ ++ W+
Sbjct: 4270 CDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMK 4449
Query: 1212 YLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPI 1271
+L++ N Q T ++ DN SA++I+ NP H RTKHI++ H +R+ + ++ L +
Sbjct: 4450 QMLKEYNVEQDVMT-LYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHV 4626
Query: 1272 STTLQTADVFTKSLTPAPFKTCISKLGM 1299
T Q AD+FTK+L F+ KLG+
Sbjct: 4627 DTEEQIADIFTKALDANQFEKLRGKLGI 4710
>TC231544 weakly similar to UP|Q9FLR2 (Q9FLR2) Polyprotein-like, partial (16%)
Length = 662
Score = 192 bits (488), Expect = 8e-49
Identities = 104/188 (55%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
Frame = +3
Query: 1122 AAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWR 1181
AA RVLKYLKG P GL + S + FSD+DWA CID+ KSIT YC FLG SLISW+
Sbjct: 18 AATRVLKYLKGCPRKGLSFSRESPIQILGFSDADWATCIDSSKSITWYCFFLGSSLISWK 197
Query: 1182 SKKQSTASRSSCESE--YRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMH-IA 1238
+KKQ+T SRSS SE YRA+ +T CE+QWL YLL+DL+ T ++ DNQSA+ +
Sbjct: 198 AKKQNTVSRSSSSSEAKYRALTSTTCELQWLTYLLKDLH-----VTLIYCDNQSALQ*LP 362
Query: 1239 HNPSYHERTKHIELDCHIVREKLQQGLVH-LLPISTTLQTADVFTKSLTPAPFKTCISKL 1297
YH + +E+DCHIVREK QQGL+H LLP+S++ Q AD+FTK+L+P F + +SKL
Sbjct: 363 IKVIYHGQ---LEIDCHIVREKTQQGLMHCLLPVSSSNQLADIFTKALSPKLFSSNLSKL 533
Query: 1298 GMKDIHLP 1305
G+ DI LP
Sbjct: 534 GLSDIFLP 557
>TC231899 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(30%)
Length = 687
Score = 166 bits (421), Expect = 5e-41
Identities = 77/166 (46%), Positives = 110/166 (65%)
Frame = +2
Query: 1145 STTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTV 1204
+T L+ + D+DWAGC R+S +GYC+F+G +L+SW+SKKQ+ +RSS E+EYR+MA
Sbjct: 8 NTQLSGYCDADWAGCPMDRRSTSGYCVFIGGNLVSWKSKKQTVVARSSAEAEYRSMAMVT 187
Query: 1205 CEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQG 1264
CE+ W+ LQ+L + ++ DNQ+A+HIA NP +HERTKHIE+DCH +REKL
Sbjct: 188 CELMWIKQFLQELRFCEELQMKLYCDNQAALHIASNPVFHERTKHIEIDCHFIREKLLSK 367
Query: 1265 LVHLLPISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLPV*GGL 1310
+ I + Q D+ TKSL + SKLG D++ P *GG+
Sbjct: 368 EIVTEFIGSNDQPVDILTKSLRGPKIQIVCSKLGAYDLYAPA*GGV 505
>TC223792 weakly similar to UP|Q9FH39 (Q9FH39) Copia-type polyprotein, partial
(7%)
Length = 804
Score = 156 bits (395), Expect = 5e-38
Identities = 83/221 (37%), Positives = 131/221 (58%), Gaps = 3/221 (1%)
Frame = +1
Query: 1080 DIGSYRRLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLF 1139
D+ +RRL+G L YL +RP+I FAV+ +S+F+ P H QAA RVL+ +KG+ GSG+
Sbjct: 10 DVTEFRRLIGSLRYLCNSRPNICFAVSLISRFMKRPRLSHMQAAKRVLRLIKGTIGSGVL 189
Query: 1140 YP---ASSSTTLTAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESE 1196
+P S L ++DSDW + KS GY D+ ++ SKKQ + S+CE+E
Sbjct: 190 FPFKAKSGKPDLLGYTDSDWKRDPEQEKSTGGYLFMYNDAPVA*SSKKQDVIALSTCEAE 369
Query: 1197 YRAMATTVCEIQWLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHI 1256
Y A + C+ W+ LL++L + P ++ DN+SA+++A +P+ H R+KHIEL H
Sbjct: 370 YVAASLGACQAVWMMNLLEELKLRERKPVNLLIDNKSAINLAKHPTLHGRSKHIELRFHY 549
Query: 1257 VREKLQQGLVHLLPISTTLQTADVFTKSLTPAPFKTCISKL 1297
+R+++ +G V + Q AD+ TK + + FK S+L
Sbjct: 550 IRDQVSKGNVTVEYCKAEEQLADLMTKPIQVSRFKQICSEL 672
>BF596070 similar to GP|27901698|gb gag-pol polyprotein {Vitis vinifera},
partial (34%)
Length = 407
Score = 150 bits (378), Expect = 5e-36
Identities = 73/130 (56%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Frame = -2
Query: 829 VDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLR 888
V PP P+GC+WVY VK G ++R KARLV KGYTQV G+D+ DTFSPVAK+TT+R
Sbjct: 406 VPLPPGKTPVGCRWVYTVKVGPTGEVDRLKARLVAKGYTQVYGIDYCDTFSPVAKLTTVR 227
Query: 889 VILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGLVC-NKANQVCLLQKSLYGLKQ 947
+ LA+ A W LHQLD+ NAFLH L+E IYM P G V + VC L +SLYGLKQ
Sbjct: 226 LFLAMAAICHWPLHQLDIKNAFLHGDLEEDIYMEQPPGFVAQGEYGLVCKLHRSLYGLKQ 47
Query: 948 ASRQWFNTLS 957
+ R WF S
Sbjct: 46 SPRAWFGKFS 17
>CA784773 weakly similar to GP|27901698|gb gag-pol polyprotein {Vitis
vinifera}, partial (34%)
Length = 409
Score = 149 bits (377), Expect = 6e-36
Identities = 71/134 (52%), Positives = 92/134 (67%)
Frame = +3
Query: 791 ISSSLEPTRFSEAVKHECWRKAMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQ 850
+SS P+ EA+ H WR+AM E++ALE N TW LV PP +GC+WVY VK
Sbjct: 3 LSSLTVPSTIREALDHPGWRQAMVDEMQALENNGTWELVPLPPGKTTVGCRWVYTVKVGP 182
Query: 851 DGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAF 910
+G ++R KARLV KGYTQV G+++ DTFSPV +TT+R+ LA+ A + W LHQLD+ NAF
Sbjct: 183 NGKVDRLKARLVAKGYTQVYGIEYCDTFSPVFFLTTVRLFLAMAAIRHWPLHQLDIKNAF 362
Query: 911 LHASLDEQIYMTIP 924
LH L+E IYM P
Sbjct: 363 LHGDLEEDIYMEQP 404
>BI317550 weakly similar to GP|9759590|dbj| polyprotein-like {Arabidopsis
thaliana}, partial (18%)
Length = 421
Score = 146 bits (368), Expect = 7e-35
Identities = 73/138 (52%), Positives = 97/138 (69%)
Frame = -2
Query: 940 KSLYGLKQASRQWFNTLSASLKKLGYKQSNADHTLYIKASSGSFTALLLYADDVLLAGND 999
KSLYGLKQASR+W+ L+ L K GY QS +D++L+ +FTALL+Y DD++LAG+
Sbjct: 420 KSLYGLKQASRKWYEKLTNLLLKEGYIQSISDYSLFTLTKGNTFTALLVYVDDIILAGDS 241
Query: 1000 MHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYALQLISDSGHLASKP 1059
+ E +K+ L F+IK+LG+ KYFLGLE+A S GI ++QRKY L L+ DSG L KP
Sbjct: 240 IDEFDRIKNVLDLAFKIKNLGKLKYFLGLEVAHSRLGITISQRKYCLDLLKDSGLLGCKP 61
Query: 1060 VSTPMDNSQKLGTNIGTP 1077
STP+D S KL + GTP
Sbjct: 60 ASTPLDTSIKLHSAAGTP 7
>TC234303 weakly similar to UP|Q8W153 (Q8W153) Polyprotein, partial (10%)
Length = 558
Score = 137 bits (345), Expect = 3e-32
Identities = 77/180 (42%), Positives = 108/180 (59%), Gaps = 3/180 (1%)
Frame = +1
Query: 852 GSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFL 911
G+I+++KARLV K YTQV G D+ TFSPVAKM + ++ ++ W L LD NAFL
Sbjct: 28 GTIDQFKARLVAKSYTQVYGQDYTGTFSPVAKMAYVHLLWSMAVVCHWPLF*LDAKNAFL 207
Query: 912 HASLDEQIYMTIPQGLVC--NKANQVCLLQKSLYGLKQASRQW-FNTLSASLKKLGYKQS 968
H L+E++YM P G V +N VC L +S YGLKQ+ R W F A+ + Y
Sbjct: 208 HGYLEEEVYMEQPLGFVAQGESSNMVCQLCRSFYGLKQSPRAWPFLYCGAA---IWYDSH 378
Query: 969 NADHTLYIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGL 1028
ADH+++ S L++Y DD+ + G+D H I +K L QF+ KDLG+ +YFLG+
Sbjct: 379 EADHSVFYCHSPQGCIYLIVYVDDIGITGSDQHGIT*LK*XLCCQFQTKDLGKLRYFLGI 558
>AI855818 weakly similar to GP|21741393|e OSJNBb0051N19.6 {Oryza sativa
(japonica cultivar-group)}, partial (10%)
Length = 463
Score = 134 bits (338), Expect = 2e-31
Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Frame = -3
Query: 812 AMDQEIEALERNQTWILVDKPPDSKPIGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEG 871
AM +E+ ERN W LV+KP + IG KWV++ K + G I R KARLV KGY Q EG
Sbjct: 458 AMQEELNQFERNNVWKLVEKPENYPVIGTKWVFRNKLDEHGIIIRNKARLVAKGYNQEEG 279
Query: 872 VDFQDTFSPVAKMTTLRVILALCASQ*WHLHQLDVDNAFLHASLDEQIYMTIPQGL-VCN 930
+D+++T++PVA++ +R++LA + + L+Q+DV +AFL+ + E++Y+ P G + +
Sbjct: 278 IDYEETYAPVARLEVIRMLLAYVSIMNFKLYQMDVKSAFLNGLIQEEVYVEQPPGFEIPD 99
Query: 931 KANQVCLLQKSLYGLKQASRQWFNTLS 957
K V LQK+LYGLKQA R W+ +S
Sbjct: 98 KPTHVYKLQKALYGLKQAPRAWYERIS 18
>BM307983
Length = 406
Score = 130 bits (327), Expect = 4e-30
Identities = 66/138 (47%), Positives = 90/138 (64%), Gaps = 7/138 (5%)
Frame = +2
Query: 838 IGCKWVYKVKYKQDGSIERYKARLVVKGYTQVEGVDFQDTFSPVAKMTTLRVILALCASQ 897
+GC+W+Y VKY D +++RYKARLV KGY Q G+D+++TF+ K I + +S
Sbjct: 2 VGCRWIYTVKY*ADDTLDRYKARLVAKGYIQTYGIDYEETFAQWQK-----*IQSGSSSP 166
Query: 898 *------WHLHQLDVDNAFLHASLDEQIYMTIPQGL-VCNKANQVCLLQKSLYGLKQASR 950
* W +HQ DV NAFLH SL+E++YM IP G N N+VC L+K+LYGLKQ+ R
Sbjct: 167 *QQAQFGWEMHQFDVKNAFLHGSLEEEVYMEIPPGYGASNGGNKVCRLKKALYGLKQSPR 346
Query: 951 QWFNTLSASLKKLGYKQS 968
WF + ++ LGYKQS
Sbjct: 347 AWFGRFTQAMLSLGYKQS 400
>TC222001 similar to UP|C716_NEPRA (O04164) Cytochrome P450 71A6 (Fragment)
, partial (21%)
Length = 912
Score = 129 bits (325), Expect = 6e-30
Identities = 56/104 (53%), Positives = 79/104 (75%)
Frame = -2
Query: 580 LPVTFWSYAVAHAVYLINRLPTPVLDNKCPFQILYNTVPDITNLKIFGTLCFVSTLTSHR 639
+P FW+YA+ HA YLIN +PTP L N P++ L+ +PDI++L+IFG LC+ ST+ ++R
Sbjct: 911 MPPNFWNYALLHAAYLINCIPTPFLQNTSPYERLHGHIPDISHLRIFGCLCYASTIKANR 732
Query: 640 KKFDPRATKCIFLGFKPDTKGFVTYDLKSRVISISRNVTFHEHN 683
KK +PRA CIF+GFKP+TKG++ YDL S I SRNV F+E++
Sbjct: 731 KKLEPRAHPCIFIGFKPNTKGYMLYDLHSHNIITSRNVVFYENH 600
>CO982036
Length = 674
Score = 126 bits (316), Expect = 7e-29
Identities = 75/208 (36%), Positives = 114/208 (54%), Gaps = 3/208 (1%)
Frame = -2
Query: 984 TALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRK 1043
T LL D+++ G+ IQ + S L+ F +K LG+ YF+ +E+ +S ++ + R
Sbjct: 655 TVYLLVYVDIIITGSSCTLIQNLTSKLNSSFPLKLLGKLDYFVEIEV-KSMPDLLFSLRT 479
Query: 1044 YALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITF 1103
++ ++P+S+PM + KL + + YR +VG L Y RP+I+F
Sbjct: 478 SIFEIFCRKPR*QAQPISSPMTTTCKLSKSDSDLFSGPTFYRSVVGALQYTTVIRPEISF 299
Query: 1104 AVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGL-FYPASSSTTL--TAFSDSDWAGCI 1160
AVN++ QF+S P D H R+L+YLKGS GL PA SS L F D+DWA +
Sbjct: 298 AVNKVCQFMSNPLDSHWTEVKRILRYLKGSLSYGL*LKPAISSQPLPIRGFCDADWASAV 119
Query: 1161 DTRKSITGYCLFLGDSLISWRSKKQSTA 1188
D ++S +G +FLG +LISW KQ A
Sbjct: 118 DDKRSTSGAAVFLGPNLISWWXXKQQVA 35
>TC225402 weakly similar to UP|Q6I923 (Q6I923) Copia-like retrotransposon
Hopscotch polyprotein, partial (7%)
Length = 1446
Score = 116 bits (290), Expect(2) = 8e-28
Identities = 52/109 (47%), Positives = 73/109 (66%)
Frame = +2
Query: 1153 DSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHY 1212
D++WA R S GYC+ +G++L+ W+S K + +RSS E+EY+AM CE+ W+
Sbjct: 8 DANWAVSPIDRGSTLGYCVSIGENLVLWKSNK*NVVARSSAEAEYKAMTVATCELIWIKQ 187
Query: 1213 LLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKL 1261
LLQ+L + DNQ+A+HIA NP +HERTKHIE+DCH VREK+
Sbjct: 188 LLQELKFGSTQQMKLCCDNQAALHIASNPVFHERTKHIEIDCHFVREKV 334
Score = 27.3 bits (59), Expect(2) = 8e-28
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 1271 ISTTLQTADVFTKSLTPAPFKTCISKLGMKDIHLPV*G 1308
+S+ Q A++FTKSL + SKLG +++ *G
Sbjct: 363 VSSNDQLANIFTKSLRGPRIQNICSKLGAFELYAST*G 476
>BM086359
Length = 427
Score = 117 bits (294), Expect = 3e-26
Identities = 63/140 (45%), Positives = 87/140 (62%)
Frame = +1
Query: 1026 LGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYR 1085
LG+++A+S+ GIV++Q KYAL +++++G L P +TPMD + KL + G L D G
Sbjct: 1 LGIDVAQSSYGIVISQWKYALDILTETGMLDCLPSNTPMDPNVKLLSGQGEALEDPGR*C 180
Query: 1086 RLVGRLLYLNTTRPDITFAVNQLSQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSS 1145
LVGRL YL TR DITFAV LSQFL PTD A R+L+Y+K +PG GL Y +
Sbjct: 181 CLVGRLNYLTVTRLDITFAVGVLSQFLKDPTDSQWNATIRILRYIKNAPGPGLLYEDKGN 360
Query: 1146 TTLTAFSDSDWAGCIDTRKS 1165
+ + D+DW G + S
Sbjct: 361 GKVVCYFDADWPGSPSDKSS 420
>TC213888 similar to UP|Q9SFE1 (Q9SFE1) T26F17.17, partial (11%)
Length = 493
Score = 117 bits (293), Expect = 3e-26
Identities = 62/150 (41%), Positives = 90/150 (59%)
Frame = +3
Query: 1161 DTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQP 1220
D RKS TG+ F+GD+ +W SKKQ + S+CE+EY A + VC WL LL++L P
Sbjct: 9 DDRKSTTGFVFFMGDTAFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELKMP 188
Query: 1221 QLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHLLPISTTLQTADV 1280
Q P + DN+SA+ +A NP +HE++KHI+ H +RE +++ V L + + Q AD+
Sbjct: 189 QEEPMEICVDNKSALALAKNPVFHEKSKHIDTRYHFIRECIEKKEVKLKYVMSQDQAADI 368
Query: 1281 FTKSLTPAPFKTCISKLGMKDIHLPV*GGL 1310
FTK L F S LG+ + V*GG+
Sbjct: 369 FTKPLKLETFVKLRSMLGVTN---QV*GGM 449
>BU548243
Length = 599
Score = 117 bits (292), Expect = 4e-26
Identities = 63/152 (41%), Positives = 89/152 (58%)
Frame = -1
Query: 1149 TAFSDSDWAGCIDTRKSITGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQ 1208
TA D+ WA +D +S G +FLG +LISW S+KQ ++SS E+EYR++A T E+
Sbjct: 599 TALCDAGWASDVDDHRSTLGSAIFLGPNLISWWSRKQQVTAQSSTEAEYRSIAQTSAELT 420
Query: 1209 WLHYLLQDLNQPQLAPTSMFRDNQSAMHIAHNPSYHERTKHIELDCHIVREKLQQGLVHL 1268
W+ LL +L P P + DN+SA+ IAHN +H RTKH+E+D V EK+ + +
Sbjct: 419 WIQALLMELQIP-FTPPVILCDNKSAVAIAHNLVFHSRTKHMEIDVFFVHEKVLSKQLQI 243
Query: 1269 LPISTTLQTADVFTKSLTPAPFKTCISKLGMK 1300
I Q A + TK L+ A F SKL +K
Sbjct: 242 FHIPALDQWAGILTKPLSSARFTFLKSKLTVK 147
>BU764568
Length = 420
Score = 96.3 bits (238), Expect(2) = 2e-25
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +3
Query: 1167 TGYCLFLGDSLISWRSKKQSTASRSSCESEYRAMATTVCEIQWLHYLLQDLNQPQLAPTS 1226
+GYC+ +G +LISW+SKKQS ++SS E+EYRAMA CE+ WL LL +L + +
Sbjct: 168 SGYCVLIGGNLISWKSKKQSVVAKSSAEAEYRAMALVTCELIWLKQLL*ELKFEEDTQMT 347
Query: 1227 MFRDNQSAMHIAHNPSYHERTKHI 1250
+ DNQ+A+HIA NP +H RTKHI
Sbjct: 348 LICDNQAALHIASNPIFH*RTKHI 419
Score = 39.3 bits (90), Expect(2) = 2e-25
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 1109 SQFLSAPTDIHEQAAHRVLKYLKGSPGSGLFYPASSSTTLTAFSDSDWAG 1158
SQFL++P H A +LK K +PG GL Y + + +SD+D G
Sbjct: 1 SQFLNSPCQDHWNAVS*ILK*TKSAPGKGLIYEDKGHSQIIGYSDAD*VG 150
>BI787454 weakly similar to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial
(21%)
Length = 421
Score = 113 bits (282), Expect = 6e-25
Identities = 60/140 (42%), Positives = 87/140 (61%), Gaps = 1/140 (0%)
Frame = +2
Query: 966 KQSNADHTL-YIKASSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKY 1024
K S ADH++ Y S G L++Y DD+++ D +I +K L + F+ KDL KY
Sbjct: 2 K*SEADHSVFYCHTSPGKCVYLMVYVDDIMITKKDATKIVQLKEHLFNHFQTKDLRYLKY 181
Query: 1025 FLGLEIARSTSGIVLNQRKYALQLISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSY 1084
FLG+E+A+S G+V++QRKYAL ++ ++G + V +PMD + KL D Y
Sbjct: 182 FLGIEVAQSGDGVVISQRKYALDILEETGMQNCRLVDSPMDPNLKLMAYQSEVYPDPERY 361
Query: 1085 RRLVGRLLYLNTTRPDITFA 1104
RRLVG+L+YL TRPDI+FA
Sbjct: 362 RRLVGKLIYLTITRPDISFA 421
>BM527454 weakly similar to GP|27901709|gb| gag-pol polyprotein {Vitis
vinifera}, partial (19%)
Length = 437
Score = 73.6 bits (179), Expect(2) = 6e-25
Identities = 32/71 (45%), Positives = 50/71 (70%)
Frame = +2
Query: 979 SSGSFTALLLYADDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIV 1038
SS L++Y DD+++ GND +I +K L F+ KDLG+ +YFLG+E+A+S GI+
Sbjct: 20 SSSRCVYLMVYVDDIVITGNDQGKIAQLKGHLFSHFQTKDLGKFEYFLGIEVAQSKDGII 199
Query: 1039 LNQRKYALQLI 1049
++QRKYAL ++
Sbjct: 200 ISQRKYALDIL 232
Score = 60.5 bits (145), Expect(2) = 6e-25
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +1
Query: 1049 ISDSGHLASKPVSTPMDNSQKLGTNIGTPLTDIGSYRRLVGRLLYLNTTRPDITFAVNQL 1108
I +G +P+ + MD ++KL N G P +D YR LVG+L+YL TRP+I+F V +
Sbjct: 220 IRHTGMSDCRPIDSLMDPNKKLLPNQGKPYSDSERYRILVGKLIYLTITRPNISFVVGVV 399
Query: 1109 SQFLSAPTDIH 1119
SQF+ +P + H
Sbjct: 400 SQFMQSPHNDH 432
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.339 0.148 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,455,107
Number of Sequences: 63676
Number of extensions: 1052276
Number of successful extensions: 8464
Number of sequences better than 10.0: 144
Number of HSP's better than 10.0 without gapping: 8216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8418
length of query: 1310
length of database: 12,639,632
effective HSP length: 109
effective length of query: 1201
effective length of database: 5,698,948
effective search space: 6844436548
effective search space used: 6844436548
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0033b.8