BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0033b.6
(717 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC216852 UP|PAL1_SOYBN (P27991) Phenylalanine ammonia-lyase 1 ,... 1264 0.0
TC225162 homologue to UP|PAL2_PHAVU (P19142) Phenylalanine ammon... 1237 0.0
TC225168 homologue to UP|PAL2_PHAVU (P19142) Phenylalanine ammon... 821 0.0
TC209668 homologue to UP|PAL2_CICAR (Q9SMK9) Phenylalanine ammon... 524 e-149
TC225165 homologue to UP|PAL2_PHAVU (P19142) Phenylalanine ammon... 323 1e-88
TC216855 homologue to PRF|1807329B.0|228615|1807329B Phe ammonia... 262 7e-81
AW757191 similar to SP|P19142|PAL2 Phenylalanine ammonia-lyase c... 204 1e-52
TC216854 homologue to UP|PAL1_SOYBN (P27991) Phenylalanine ammon... 189 3e-48
AW348884 similar to PIR|JQ1070|JQ1 phenylalanine ammonia-lyase (... 186 3e-47
AW351185 homologue to PIR|JQ1070|JQ10 phenylalanine ammonia-lyas... 174 2e-43
AW351172 similar to SP|P19143|PAL3 Phenylalanine ammonia-lyase c... 172 4e-43
AI495627 similar to SP|P19143|PAL3 Phenylalanine ammonia-lyase c... 153 3e-37
AI938628 similar to SP|P19142|PAL2_ Phenylalanine ammonia-lyase ... 100 2e-21
AW459068 similar to SP|Q43052|PAL2_ Phenylalanine ammonia-lyase ... 89 9e-18
TC216853 UP|PAL1_SOYBN (P27991) Phenylalanine ammonia-lyase 1 ,... 75 1e-13
TC214739 35 0.15
TC204720 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 34 0.20
TC204721 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17... 32 1.3
CD400069 similar to GP|17862860|gb| RE01153p {Drosophila melanog... 30 4.9
TC217992 29 8.3
>TC216852 UP|PAL1_SOYBN (P27991) Phenylalanine ammonia-lyase 1 , complete
Length = 2311
Score = 1264 bits (3270), Expect = 0.0
Identities = 639/713 (89%), Positives = 671/713 (93%)
Frame = +1
Query: 5 TNQTQNGSFICTAANGTATATDPLSWGVAAESMKGSHLNEVKRMVAEYRKPVVKLGGETL 64
TN QNGSF + A G DPL+WG AAE+MKGSHL+EVKRMVAEYRKPVV+LGGETL
Sbjct: 10 TNGHQNGSFCLSTAKGN---NDPLNWGAAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETL 180
Query: 65 TIAQVAAIAANEQGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTK 124
TIAQVAA+A ++ GV+VEL ESAR GVKASS+WVMNSMNNGTDSYGVTTGFGATSHRRTK
Sbjct: 181 TIAQVAAVAGHDHGVAVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTK 360
Query: 125 NGNALQLELIRFLNAGIFGNGTESTHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAIT 184
G ALQ ELIRFLNAGIFGNGTES+HTLP ATRAAMLVRINTLLQGYSGIRFEILEAIT
Sbjct: 361 QGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAIT 540
Query: 185 KLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKNAFQLAGI 244
KL+NNN+TPCL LRGT+TASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAK AF+LA I
Sbjct: 541 KLLNNNVTPCLDLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASI 720
Query: 245 DSGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPEFTDH 304
+S FFELQPKEGLALVNGTAVGSGLAS+VLF+AN+LA+L+EVLSAIFAEVMQGKPEFTDH
Sbjct: 721 NSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDH 900
Query: 305 LTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPL 364
LTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHE+DPLQKPKQDRYALRTSPQWLGPL
Sbjct: 901 LTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPL 1080
Query: 365 IEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLM 424
IEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALA+IGKLM
Sbjct: 1081IEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLM 1260
Query: 425 FAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSA 484
FAQF+ELV+D YNNGLPSNLTASRNPSLDYG KGAEIAMASYCSELQYLANPVTTHVQSA
Sbjct: 1261FAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSA 1440
Query: 485 EQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQV 544
EQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLK SVK+TVSQV
Sbjct: 1441EQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQV 1620
Query: 545 VKRTLTTGVNGELHPSRFCEKDLLKVVDRETLFSYIDDPCSATYPLMQKLRQVLVDHALV 604
KR LTTGVNGELHPSRFCEKDLLKVVDRE +FSYIDDPCSATYPLMQKLRQVLVDHALV
Sbjct: 1621SKRILTTGVNGELHPSRFCEKDLLKVVDREYIFSYIDDPCSATYPLMQKLRQVLVDHALV 1800
Query: 605 NGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTIPNKINECRSYPLYKF 664
N E+EKD +SIFQKIA FE+ELK+LLPKEVESARAAYESG IPNKI ECRSYPLYKF
Sbjct: 1801NAESEKDVNSSIFQKIAIFEEELKNLLPKEVESARAAYESGKAAIPNKIQECRSYPLYKF 1980
Query: 665 VREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 717
VREELGT LLTGEK RSPGEE DKLFTA+CQGKIIDPLLECLGEWNGAPLPIC
Sbjct: 1981VREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 2139
>TC225162 homologue to UP|PAL2_PHAVU (P19142) Phenylalanine ammonia-lyase
class II , partial (97%)
Length = 2519
Score = 1237 bits (3201), Expect = 0.0
Identities = 619/717 (86%), Positives = 664/717 (92%)
Frame = +2
Query: 1 MAPNTNQTQNGSFICTAANGTATATDPLSWGVAAESMKGSHLNEVKRMVAEYRKPVVKLG 60
MA N + + NG +A DPL+WG AAE+M GSHL+EVKRM+ EYR+PVVKLG
Sbjct: 71 MASEANAANTNFCVNVSNNGYISANDPLNWGAAAEAMAGSHLDEVKRMLEEYRRPVVKLG 250
Query: 61 GETLTIAQVAAIAANEQGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSH 120
GETLTI+QVAAIAA++QGV VEL ES+RAGVKASSDWVM SMN GTDSYGVTTGFGATSH
Sbjct: 251 GETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSH 430
Query: 121 RRTKNGNALQLELIRFLNAGIFGNGTESTHTLPQPATRAAMLVRINTLLQGYSGIRFEIL 180
RRTK G ALQ ELIRFLNAGIFGNGTES TLP ATRAAMLVRINTLLQGYSGIRFEIL
Sbjct: 431 RRTKQGAALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEIL 610
Query: 181 EAITKLINNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKNAFQ 240
EAITKL+NNNITPCLPLRGT+TASGDLVPLSYIAGLLTGRPNSKAVGPSGE+LNAK AF+
Sbjct: 611 EAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFE 790
Query: 241 LAGIDSGFFELQPKEGLALVNGTAVGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPE 300
LA I + FFELQPKEGLALVNGTAVGSGLASIVLF+AN++A+L+EV+SAIFAEVMQGKPE
Sbjct: 791 LANIGAEFFELQPKEGLALVNGTAVGSGLASIVLFEANIIAVLSEVISAIFAEVMQGKPE 970
Query: 301 FTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQW 360
FTDHLTHKLKHHPGQIEAAAIMEHIL+GSSY+KAAKKLHE+DPLQKPKQDRYALRTSPQW
Sbjct: 971 FTDHLTHKLKHHPGQIEAAAIMEHILEGSSYVKAAKKLHEIDPLQKPKQDRYALRTSPQW 1150
Query: 361 LGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAI 420
LGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALA+I
Sbjct: 1151LGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASI 1330
Query: 421 GKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTH 480
GKLMFAQF+ELV+D+YNNGLPSNLTASRNPSLDYG KGAEIAMASYCSELQYLANPVT+H
Sbjct: 1331GKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSH 1510
Query: 481 VQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKST 540
VQSAEQHNQDVNSLGLISSRKT+EAIEILKLMSSTFL+ALCQAIDLRHLEENLK +VK+
Sbjct: 1511VQSAEQHNQDVNSLGLISSRKTHEAIEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNV 1690
Query: 541 VSQVVKRTLTTGVNGELHPSRFCEKDLLKVVDRETLFSYIDDPCSATYPLMQKLRQVLVD 600
VSQV KRTLTTGVNGELHPSRFCEKDLLKVVDRE F+YIDDPCS TYPLMQKLRQVLVD
Sbjct: 1691VSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVD 1870
Query: 601 HALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTIPNKINECRSYP 660
+AL NGENEK++ TSIFQKIATFE+ELK+LLPKEVE AR AYE+ IPNKI ECRSYP
Sbjct: 1871YALANGENEKNTSTSIFQKIATFEEELKTLLPKEVEGARVAYENDQCAIPNKIKECRSYP 2050
Query: 661 LYKFVREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 717
LYKFVREELGT LLTGE+ SPGEECDK+FTA+CQGKIIDPLLECLGEWNGAPLPIC
Sbjct: 2051LYKFVREELGTALLTGERVISPGEECDKVFTALCQGKIIDPLLECLGEWNGAPLPIC 2221
>TC225168 homologue to UP|PAL2_PHAVU (P19142) Phenylalanine ammonia-lyase
class II , partial (64%)
Length = 1627
Score = 821 bits (2121), Expect = 0.0
Identities = 406/453 (89%), Positives = 433/453 (94%)
Frame = +1
Query: 265 VGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEH 324
VGSGLASIVLF+AN++A+L+EV+SAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEH
Sbjct: 1 VGSGLASIVLFEANIIAVLSEVISAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEH 180
Query: 325 ILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVND 384
IL+GSSY+KAAKKLHE+DPLQKPKQDRYALRTSPQWLGP IEVIRFSTKSIEREINSVND
Sbjct: 181 ILEGSSYIKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVND 360
Query: 385 NPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNL 444
NPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALA+IGKLMFAQF+ELV+D+YNNGLPSNL
Sbjct: 361 NPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDYYNNGLPSNL 540
Query: 445 TASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNE 504
TASRNPSLDYG KGAEIAMASYCSELQYLANPVT+HVQSAEQHNQDVNSLGLISSRKT+E
Sbjct: 541 TASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTHE 720
Query: 505 AIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQVVKRTLTTGVNGELHPSRFCE 564
AIEILKLMSSTFLIALCQAIDLRHLEENLK +VK+ VSQV KRTLTTGVNGELHPSRFCE
Sbjct: 721 AIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCE 900
Query: 565 KDLLKVVDRETLFSYIDDPCSATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFE 624
KDLLKVVDRE F+YIDDPCS TYPLMQKLRQVLVD+AL NGENEK++ TSIFQKIATFE
Sbjct: 901 KDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGENEKNTNTSIFQKIATFE 1080
Query: 625 DELKSLLPKEVESARAAYESGNPTIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGE 684
+ELK+LLPKEVE AR AYE+ IPNKI ECRSYPLYKFVREELGT LLTGE+ SPGE
Sbjct: 1081EELKTLLPKEVEGARVAYENDQCAIPNKIKECRSYPLYKFVREELGTALLTGERVVSPGE 1260
Query: 685 ECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 717
ECDK+FTA+CQGKIIDPLLECLGEWNGAPLPIC
Sbjct: 1261ECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC 1359
>TC209668 homologue to UP|PAL2_CICAR (Q9SMK9) Phenylalanine ammonia-lyase 2
, partial (43%)
Length = 940
Score = 524 bits (1350), Expect = e-149
Identities = 260/311 (83%), Positives = 282/311 (90%)
Frame = +3
Query: 368 IRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQ 427
IR +TK IEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLA+A+IGKLMFAQ
Sbjct: 3 IRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQ 182
Query: 428 FTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQH 487
F+ELV+D YNNGLPSNLTASRNPSLDYG KGAEIAMASYCSELQYLANPVT HVQSAEQH
Sbjct: 183 FSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQH 362
Query: 488 NQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKSTVSQVVKR 547
NQDVNSLGL+SSRKT E I+ILKL +STFL+ALCQAIDLRHLEENLK +V++TVSQV KR
Sbjct: 363 NQDVNSLGLVSSRKTAEKIDILKLRASTFLVALCQAIDLRHLEENLKNTVRNTVSQVAKR 542
Query: 548 TLTTGVNGELHPSRFCEKDLLKVVDRETLFSYIDDPCSATYPLMQKLRQVLVDHALVNGE 607
LT G+NGELHPSRFCEKDLLK+VDRE +++YIDDPCSATYPLMQKLR VLVDHAL NG+
Sbjct: 543 VLTVGINGELHPSRFCEKDLLKIVDREYVYAYIDDPCSATYPLMQKLRLVLVDHALQNGD 722
Query: 608 NEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTIPNKINECRSYPLYKFVRE 667
E S TSIFQKI FE+EL +LLPKEVESAR E+GNP IPN+I ECRSYPLYKFVRE
Sbjct: 723 KEASSSTSIFQKIGAFEEELNALLPKEVESARIEVENGNPAIPNRIKECRSYPLYKFVRE 902
Query: 668 ELGTELLTGEK 678
LGT LLTGEK
Sbjct: 903 NLGTTLLTGEK 935
>TC225165 homologue to UP|PAL2_PHAVU (P19142) Phenylalanine ammonia-lyase
class II , partial (46%)
Length = 1221
Score = 323 bits (829), Expect = 1e-88
Identities = 156/190 (82%), Positives = 169/190 (88%)
Frame = +1
Query: 528 HLEENLKYSVKSTVSQVVKRTLTTGVNGELHPSRFCEKDLLKVVDRETLFSYIDDPCSAT 587
+ EN K +VK+ VSQV KRTLTTGVNGELHPSRFCEKDLLKVVDRE F+YIDDPCS T
Sbjct: 532 YASENXKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGT 711
Query: 588 YPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNP 647
YPLMQKLRQVLVD+AL NGENEK++ TSIFQKIATFE+ELK+LLPKEVE AR AYE+
Sbjct: 712 YPLMQKLRQVLVDYALANGENEKNTNTSIFQKIATFEEELKTLLPKEVEGARVAYENDQC 891
Query: 648 TIPNKINECRSYPLYKFVREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLG 707
IPNKI ECRSYPLYKFVREELGT LLTGE+ SPGEECDK+FTA+CQGKIIDPLLECLG
Sbjct: 892 AIPNKIKECRSYPLYKFVREELGTALLTGERVISPGEECDKVFTALCQGKIIDPLLECLG 1071
Query: 708 EWNGAPLPIC 717
EWNGAPLPIC
Sbjct: 1072EWNGAPLPIC 1101
Score = 234 bits (596), Expect = 1e-61
Identities = 123/164 (75%), Positives = 135/164 (82%), Gaps = 5/164 (3%)
Frame = +2
Query: 6 NQTQNGSF---ICTAAN--GTATATDPLSWGVAAESMKGSHLNEVKRMVAEYRKPVVKLG 60
N TQ G+ C + N G +A DPL+WG AAE+M GSHL+EVKRMV EYR+PVVKLG
Sbjct: 53 NMTQEGNGNTNFCMSVNNNGYISANDPLNWGAAAEAMAGSHLDEVKRMVEEYRRPVVKLG 232
Query: 61 GETLTIAQVAAIAANEQGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSH 120
GETLTI+QVAAIAA++QGV VEL ES+RAGVKASSDWVM SM+ GTDSYGVTTGFGATSH
Sbjct: 233 GETLTISQVAAIAAHDQGVKVELAESSRAGVKASSDWVMESMDKGTDSYGVTTGFGATSH 412
Query: 121 RRTKNGNALQLELIRFLNAGIFGNGTESTHTLPQPATRAAMLVR 164
RRTK G AL ELIRFLNAGIFGNGTES TLP ATRAAMLVR
Sbjct: 413 RRTKQGGALHNELIRFLNAGIFGNGTESNCTLPHTATRAAMLVR 544
>TC216855 homologue to PRF|1807329B.0|228615|1807329B Phe ammonia lyase.
{Phaseolus vulgaris;} , partial (27%)
Length = 581
Score = 262 bits (669), Expect(2) = 7e-81
Identities = 129/159 (81%), Positives = 148/159 (92%)
Frame = +3
Query: 393 NKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSL 452
NKAL+GGNFQGTPIGVSMDN RLA+A+IGKL+FAQFTELV+D YNNGLPSNL+A RNPSL
Sbjct: 102 NKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSAGRNPSL 281
Query: 453 DYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLM 512
DYG K +E+AMA+YCSELQYLANPVT+HVQSAEQHNQDVNSLGLIS+ KT EA+EILKLM
Sbjct: 282 DYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAVEILKLM 461
Query: 513 SSTFLIALCQAIDLRHLEENLKYSVKSTVSQVVKRTLTT 551
SST+L+ALCQAIDLRHLEEN K +VK+TVS+V ++TL T
Sbjct: 462 SSTYLVALCQAIDLRHLEENFKSTVKNTVSRVAQKTLIT 578
Score = 58.2 bits (139), Expect(2) = 7e-81
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +2
Query: 362 GPLIEVIRFSTKSIEREINSVNDNPLIDVSR 392
GP IE+IR+STKSIEREINSVNDNPLIDV+R
Sbjct: 8 GPQIEIIRYSTKSIEREINSVNDNPLIDVTR 100
>AW757191 similar to SP|P19142|PAL2 Phenylalanine ammonia-lyase class II (EC
4.3.1.5). [Kidney bean French bean] {Phaseolus
vulgaris}, partial (19%)
Length = 430
Score = 204 bits (518), Expect = 1e-52
Identities = 107/143 (74%), Positives = 119/143 (82%)
Frame = +2
Query: 132 ELIRFLNAGIFGNGTESTHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNI 191
ELIRFL AGIFG GTES TLP AT A ML+RIN LLQ YSGIRFEILEAITKL+NNNI
Sbjct: 2 ELIRFLKAGIFGIGTESNCTLPHTATIATMLLRINKLLQCYSGIRFEILEAITKLLNNNI 181
Query: 192 TPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKNAFQLAGIDSGFFEL 251
PC+PLRGT+T+SGDLVPLSYIAGLLTG PNSKAVGPSG++L A AF+L I + F L
Sbjct: 182 APCMPLRGTITSSGDLVPLSYIAGLLTG*PNSKAVGPSGDILYAI*AFELTNIGAEFCVL 361
Query: 252 QPKEGLALVNGTAVGSGLASIVL 274
QPKEGL LVNGT++GSG SIV+
Sbjct: 362 QPKEGLVLVNGTSIGSG*YSIVI 430
>TC216854 homologue to UP|PAL1_SOYBN (P27991) Phenylalanine ammonia-lyase 1
, partial (15%)
Length = 512
Score = 189 bits (481), Expect = 3e-48
Identities = 92/108 (85%), Positives = 97/108 (89%)
Frame = +2
Query: 609 EKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTIPNKINECRSYPLYKFVREE 668
EKD +SIFQKIA FE+ELK+LLPKEVESARAAYESG IPNKI ECR YPLYKFVREE
Sbjct: 2 EKDVNSSIFQKIAIFEEELKNLLPKEVESARAAYESGKAAIPNKIQECRFYPLYKFVREE 181
Query: 669 LGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPI 716
LGT LLTGEK RSPGEE DKLFTA+CQGKIIDPL+ECLGEWNGAPLPI
Sbjct: 182 LGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGAPLPI 325
>AW348884 similar to PIR|JQ1070|JQ1 phenylalanine ammonia-lyase (EC 4.3.1.5)
- soybean (fragment), partial (29%)
Length = 455
Score = 186 bits (472), Expect = 3e-47
Identities = 90/123 (73%), Positives = 101/123 (81%)
Frame = -2
Query: 595 RQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTIPNKIN 654
RQVLV++AL E K++ TSIFQKIATFE+ L +L KEVE AR AYE+ IPNKI
Sbjct: 454 RQVLVNYALAXXEXXKNTNTSIFQKIATFEE*LXTLXXKEVEGARVAYENDQCAIPNKIK 275
Query: 655 ECRSYPLYKFVREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPL 714
ECRSYPLYKFVREELGT LLTGE+ SPGEECDK+FT +CQGKIIDPLLECLG+WNGAPL
Sbjct: 274 ECRSYPLYKFVREELGTALLTGERVVSPGEECDKVFTVMCQGKIIDPLLECLGDWNGAPL 95
Query: 715 PIC 717
P C
Sbjct: 94 PTC 86
>AW351185 homologue to PIR|JQ1070|JQ10 phenylalanine ammonia-lyase (EC
4.3.1.5) - soybean (fragment), partial (23%)
Length = 448
Score = 174 bits (440), Expect = 2e-43
Identities = 84/101 (83%), Positives = 92/101 (90%)
Frame = -2
Query: 521 CQAIDLRHLEENLKYSVKSTVSQVVKRTLTTGVNGELHPSRFCEKDLLKVVDRETLFSYI 580
CQAIDLRHLEENLK +VK+ VSQV KRTLTTGVNGELHPSRFCEKDLLKVVDRE F+YI
Sbjct: 447 CQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYI 268
Query: 581 DDPCSATYPLMQKLRQVLVDHALVNGENEKDSKTSIFQKIA 621
DDPCS TYPLMQKLRQVLVD+AL NGENEK++ TSIFQ ++
Sbjct: 267 DDPCSGTYPLMQKLRQVLVDYALANGENEKNTNTSIFQYVS 145
>AW351172 similar to SP|P19143|PAL3 Phenylalanine ammonia-lyase class III (EC
4.3.1.5). [Kidney bean French bean] {Phaseolus
vulgaris}, partial (17%)
Length = 508
Score = 172 bits (437), Expect = 4e-43
Identities = 80/122 (65%), Positives = 99/122 (80%)
Frame = -3
Query: 595 RQVLVDHALVNGENEKDSKTSIFQKIATFEDELKSLLPKEVESARAAYESGNPTIPNKIN 654
+QVL + A ++ N+K+ IF+KI FEDELKSLLPKEVE+AR AYE+GNP IPN+I
Sbjct: 506 KQVLYEKAHISAINDKNVSLLIFEKIGAFEDELKSLLPKEVENARVAYENGNPAIPNRIK 327
Query: 655 ECRSYPLYKFVREELGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPL 714
ECRSYPLYKFVREEL LLTGEK SP EE +K++TA+CQ KI+DP+LECLG+W G+P+
Sbjct: 326 ECRSYPLYKFVREELEIGLLTGEKNLSPDEEFEKVYTAMCQAKIVDPILECLGDWKGSPI 147
Query: 715 PI 716
PI
Sbjct: 146 PI 141
>AI495627 similar to SP|P19143|PAL3 Phenylalanine ammonia-lyase class III (EC
4.3.1.5). [Kidney bean French bean] {Phaseolus
vulgaris}, partial (17%)
Length = 412
Score = 153 bits (386), Expect = 3e-37
Identities = 79/127 (62%), Positives = 94/127 (73%), Gaps = 5/127 (3%)
Frame = +1
Query: 26 DPLSWGVAAESMKGSHLNEVKRMVAEYRKPVVKLGG-ETLTIAQVAAIAANEQG----VS 80
DPL+W AA+S+KGSH EVKRMVAEYRKP++ LGG ETLTI+QVAA+A
Sbjct: 28 DPLNWSHAADSLKGSHFEEVKRMVAEYRKPLISLGGGETLTISQVAAVAVANANHNLQAK 207
Query: 81 VELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKNGNALQLELIRFLNAG 140
V+L ESARAGV AS DW+ ++N GT YGVTTGFGA SHR+T+ G ALQ E++RFLN
Sbjct: 208 VDLSESARAGVDASCDWITQNINKGTPIYGVTTGFGAASHRQTQQGLALQKEMVRFLNCA 387
Query: 141 IFGNGTE 147
IFG TE
Sbjct: 388 IFGYQTE 408
>AI938628 similar to SP|P19142|PAL2_ Phenylalanine ammonia-lyase class II (EC
4.3.1.5). [Kidney bean French bean] {Phaseolus
vulgaris}, partial (9%)
Length = 208
Score = 100 bits (250), Expect = 2e-21
Identities = 51/69 (73%), Positives = 58/69 (83%)
Frame = +2
Query: 257 LALVNGTAVGSGLASIVLFDANVLAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQI 316
LALVNGTA GSGLASI LF+AN++A L+E +S IFAE+MQG+PE TDHL H LKHHPGQ
Sbjct: 2 LALVNGTAGGSGLASIGLFEANIIAGLSEGISTIFAEMMQGEPEVTDHLNH*LKHHPGQN 181
Query: 317 EAAAIMEHI 325
A AIMEHI
Sbjct: 182 GACAIMEHI 208
>AW459068 similar to SP|Q43052|PAL2_ Phenylalanine ammonia-lyase G2B (EC
4.3.1.5). [Aspen] {Populus kitakamiensis}, partial (6%)
Length = 391
Score = 88.6 bits (218), Expect = 9e-18
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = -3
Query: 669 LGTELLTGEKTRSPGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPIC 717
LGT LLTGEK +SPGEE DK+FTA+C+GK+IDPLL+CL EW GAPLPIC
Sbjct: 386 LGTTLLTGEKVKSPGEEFDKVFTALCEGKLIDPLLDCLKEWKGAPLPIC 240
>TC216853 UP|PAL1_SOYBN (P27991) Phenylalanine ammonia-lyase 1 , partial
(5%)
Length = 278
Score = 74.7 bits (182), Expect = 1e-13
Identities = 32/35 (91%), Positives = 34/35 (96%)
Frame = +3
Query: 682 PGEECDKLFTAICQGKIIDPLLECLGEWNGAPLPI 716
PGEE DKLFTA+CQGKIIDPL+ECLGEWNGAPLPI
Sbjct: 3 PGEEFDKLFTAMCQGKIIDPLMECLGEWNGAPLPI 107
>TC214739
Length = 1005
Score = 34.7 bits (78), Expect = 0.15
Identities = 16/59 (27%), Positives = 34/59 (57%)
Frame = +1
Query: 15 CTAANGTATATDPLSWGVAAESMKGSHLNEVKRMVAEYRKPVVKLGGETLTIAQVAAIA 73
C+ + G A T+P++WG +S++ S + ++R ++E P K+G E + + + +A
Sbjct: 157 CSVSAGAAAQTNPVAWGCEIDSLENS--SALQRWLSESGLPPQKMGIERVEVGERGLVA 327
>TC204720 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (31%)
Length = 1936
Score = 34.3 bits (77), Expect = 0.20
Identities = 17/66 (25%), Positives = 33/66 (49%)
Frame = -3
Query: 143 GNGTESTHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCLPLRGTVT 202
GN TH L P++R + + I + L + ++ ++L+ +T N+N P + +
Sbjct: 302 GNSIRRTHKLNSPSSRIRISIHITSNLNFGTRLQLKVLDGLTTFSNDNTNPPIGDINLLA 123
Query: 203 ASGDLV 208
+ DLV
Sbjct: 122 RTADLV 105
>TC204721 similar to GB|AAL84954.1|19310435|AY078954 F17H15.1/F17H15.1
{Arabidopsis thaliana;} , partial (30%)
Length = 1762
Score = 31.6 bits (70), Expect = 1.3
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 143 GNGTESTHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNITPCL 195
GN S H L +P+ R + + I + L + ++ EIL +++ NN+ P +
Sbjct: 172 GNCFRSAHKLNRPSGRIRVRINITSNLNFGTRLQLEILNSLSAFTNNHTNPAI 14
>CD400069 similar to GP|17862860|gb| RE01153p {Drosophila melanogaster},
partial (14%)
Length = 485
Score = 29.6 bits (65), Expect = 4.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 423 LMFAQFTELVDDHYNNGLPSNLTASRNPSL 452
L F + +V H NNG P NL S++P++
Sbjct: 42 LFFYKKNTMVSKHPNNGFPQNLRGSKHPNV 131
>TC217992
Length = 1097
Score = 28.9 bits (63), Expect = 8.3
Identities = 14/37 (37%), Positives = 25/37 (66%)
Frame = +3
Query: 376 EREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDN 412
E E N++ + ++DVSRN A + G ++G+ IG ++ N
Sbjct: 684 EGEGNNI-PSEVVDVSRNSASNRGTWRGSSIGCTLSN 791
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,460,687
Number of Sequences: 63676
Number of extensions: 315795
Number of successful extensions: 1683
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of query: 717
length of database: 12,639,632
effective HSP length: 104
effective length of query: 613
effective length of database: 6,017,328
effective search space: 3688622064
effective search space used: 3688622064
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Lotus: description of TM0033b.6