BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0032.10
(216 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC203464 similar to GB|AAF35920.1|7025820|AC005892 L505.8 {Leish... 35 0.026
TC206653 similar to UP|Q7XYX8 (Q7XYX8) AKIN beta1, partial (97%) 28 3.2
TC211008 28 3.2
BG154531 28 4.2
TC234500 27 5.4
BM093797 27 7.1
BE210259 similar to GP|9293956|dbj protein arginine N-methyltran... 27 9.3
CO978618 27 9.3
TC225829 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like ara... 27 9.3
TC228250 UP|Q84P29 (Q84P29) Seed calcium dependent protein kinas... 27 9.3
TC220201 similar to UP|Q9ERI5 (Q9ERI5) Apoptotic cell clearance ... 27 9.3
TC220682 similar to UP|Q94544 (Q94544) Phosphatidylinositol 4-ph... 27 9.3
TC213135 similar to UP|Q9LJZ9 (Q9LJZ9) Protein arginine N-methyl... 27 9.3
>TC203464 similar to GB|AAF35920.1|7025820|AC005892 L505.8 {Leishmania
major;} , partial (8%)
Length = 1386
Score = 35.0 bits (79), Expect = 0.026
Identities = 18/67 (26%), Positives = 39/67 (57%)
Frame = +2
Query: 70 GVLRDAMGQWIKGFSINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVIR 129
GVLRDA +W++GF+ + + YA + + + T +++ + + ++I+ DS V+
Sbjct: 572 GVLRDASAKWLRGFAKKL-NPTYAVH-QTELEAILTGLKVASEMNVKKLIVESDSDSVVS 745
Query: 130 LIIDPVK 136
++ + VK
Sbjct: 746 MVENGVK 766
>TC206653 similar to UP|Q7XYX8 (Q7XYX8) AKIN beta1, partial (97%)
Length = 1071
Score = 28.1 bits (61), Expect = 3.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 151 RTVKVRPKRTWKVRPSRTWKNLQIPTPYSSRFTIR 185
R + RP+R+ + RP RTW + P SR +R
Sbjct: 246 RWIHSRPRRSLRRRPRRTWNSRAGLPPPGSRLLLR 350
>TC211008
Length = 516
Score = 28.1 bits (61), Expect = 3.2
Identities = 16/62 (25%), Positives = 35/62 (55%)
Frame = +1
Query: 70 GVLRDAMGQWIKGFSINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVIR 129
G++RD+ G ++ GF++N+G+ + LA+ V +++ L +V + DS + +
Sbjct: 157 GLVRDSSGCYLGGFTVNLGNTSVT---LAELWGVVHGLKLAWDLGCKKVKVDIDSGNALG 327
Query: 130 LI 131
L+
Sbjct: 328 LV 333
>BG154531
Length = 362
Score = 27.7 bits (60), Expect = 4.2
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 158 KRTWKVRPSRTWKNLQIPTPYSSRFTIRSGAVWKIGQ 194
+RT K R +R W N P+P +R RS VW +G+
Sbjct: 275 RRTRKARIARWWPNPTRPSP--NRALARSIGVWGMGE 171
>TC234500
Length = 866
Score = 27.3 bits (59), Expect = 5.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 71 VLRDAMGQWIKGFSINMGSRAYA--NYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSLDVI 128
V RD+ G W GF++N+G+ + L++F + + +E V I CD L +
Sbjct: 202 VFRDSTGSWCFGFALNLGNLSCG*PLLKLSEFEDSVRIFSVTLIIE-EHVFIRCDKLQYL 378
>BM093797
Length = 421
Score = 26.9 bits (58), Expect = 7.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 152 TVKVRPKRTWKVRPSRTWKNLQIPTPYSSR 181
T RP+ W R W LQ TP+S R
Sbjct: 134 TRSTRPRTPWSTRSHVNWLPLQHRTPHSPR 45
>BE210259 similar to GP|9293956|dbj protein arginine N-methyltransferase-like
protein {Arabidopsis thaliana}, partial (32%)
Length = 397
Score = 26.6 bits (57), Expect = 9.3
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +3
Query: 40 GFIKSLGMEQHVDVYVARLASVIGIYMRVVGVLRDAMGQWIK 81
G ++ + +++ VDV ++ S + +Y ++G + +A +W+K
Sbjct: 165 GRVEDVEIDEEVDVIISEWMSYMLLYESMLGSVINARDRWLK 290
>CO978618
Length = 801
Score = 26.6 bits (57), Expect = 9.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 148 NFART--VKVRPKRTWKVRPSRTWKNLQIPTPY 178
N+ RT ++ K W R WK++ +PTP+
Sbjct: 261 NYYRT*HFPMKSKHEWTESCLRNWKDIHMPTPF 163
>TC225829 weakly similar to UP|Q9C5Q6 (Q9C5Q6) Fasciclin-like
arabinogalactan-protein 2, partial (57%)
Length = 1652
Score = 26.6 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 157 PKRTWKVRPSRTWKNLQIPTPYSSRFT 183
PKR+ RPS +W + P P SS T
Sbjct: 155 PKRSTAARPSPSWPSTMPPCPPSSTST 235
>TC228250 UP|Q84P29 (Q84P29) Seed calcium dependent protein kinase a,
complete
Length = 1843
Score = 26.6 bits (57), Expect = 9.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 124 SLDVIRLIIDPVKFVKSEKALYEKNFARTVKVRPKRTWKVRPSR 167
SL V+ L+ DPVK + + L+++ R + VRP VR R
Sbjct: 521 SLAVVSLLHDPVKQLSTLAQLHDEVHGRGILVRPFDADNVRVLR 390
>TC220201 similar to UP|Q9ERI5 (Q9ERI5) Apoptotic cell clearance receptor
PtdSerR (Phosphatidylserine receptor), partial (5%)
Length = 1185
Score = 26.6 bits (57), Expect = 9.3
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 70 GVLRDAMGQWIKGF----SINMGSRAYANYFLAQFTTVSTAVEIVIGLEIPQVIIVCDSL 125
GV+RD G W GF N+ +A+ A T + A E +I +E ++++ DS
Sbjct: 421 GVIRDEWGTWCVGFDQKLDPNICRQAHYTELQAILTGLKVAREDMINVE--KLVVESDSE 594
Query: 126 DVIRLI 131
+ ++
Sbjct: 595 PAVNMV 612
>TC220682 similar to UP|Q94544 (Q94544) Phosphatidylinositol 4-phosphate
5-kinase , partial (7%)
Length = 1280
Score = 26.6 bits (57), Expect = 9.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 154 KVRPKRTWKVRPSRTW 169
++RP+R K+ PSRTW
Sbjct: 371 QIRPRRLMKLPPSRTW 418
>TC213135 similar to UP|Q9LJZ9 (Q9LJZ9) Protein arginine
N-methyltransferase-like protein, partial (24%)
Length = 650
Score = 26.6 bits (57), Expect = 9.3
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = +3
Query: 40 GFIKSLGMEQHVDVYVARLASVIGIYMRVVGVLRDAMGQWIK 81
G ++ + +++ VDV ++ S + +Y ++G + +A +W+K
Sbjct: 189 GRVEDVEIDEEVDVIISEWMSYMLLYESMLGSVINARDRWLK 314
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.322 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,744,347
Number of Sequences: 63676
Number of extensions: 105105
Number of successful extensions: 541
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of query: 216
length of database: 12,639,632
effective HSP length: 93
effective length of query: 123
effective length of database: 6,717,764
effective search space: 826284972
effective search space used: 826284972
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0032.10