BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0030.6
(780 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211530 weakly similar to UP|Q8LPA2 (Q8LPA2) Chloride channel, ... 370 e-102
TC229697 similar to UP|CLCB_ARATH (P92942) Chloride channel prot... 285 5e-77
BE800616 weakly similar to GP|21321024|db chloride channel {Oryz... 238 1e-62
TC234490 weakly similar to UP|Q8LPA2 (Q8LPA2) Chloride channel, ... 231 7e-61
TC230244 similar to UP|CLCB_ARATH (P92942) Chloride channel prot... 218 6e-57
TC220055 homologue to GB|AAC26247.2|6382041|F9D12 Arabidopsis th... 124 2e-28
BG359405 similar to GP|4768916|gb| CLC-Nt2 protein {Nicotiana ta... 119 7e-27
BE659780 similar to GP|4768916|gb| CLC-Nt2 protein {Nicotiana ta... 79 9e-24
TC220688 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial ... 104 1e-22
BF071148 weakly similar to GP|1742959|emb CLC-d chloride channel... 91 3e-18
AW100482 similar to PIR|T52107|T52 anion channel protein CLC-a [... 70 8e-18
TC229696 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial ... 75 1e-13
TC223196 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial ... 63 4e-10
AI938566 59 8e-09
TC228289 46 7e-05
BU551251 30 3.1
TC225943 similar to UP|NU4C_LOTJA (Q9BBP3) NAD(P)H-quinone oxido... 30 3.1
TC215708 homologue to UP|Q8GSM7 (Q8GSM7) Hydroxycinnamoyl transf... 30 3.1
BG838979 29 6.9
CD408658 29 6.9
>TC211530 weakly similar to UP|Q8LPA2 (Q8LPA2) Chloride channel, partial
(24%)
Length = 897
Score = 370 bits (949), Expect = e-102
Identities = 180/231 (77%), Positives = 205/231 (87%), Gaps = 1/231 (0%)
Frame = +2
Query: 540 VSKSVADVFNANIYDLIMKSKGLPYLETHAEPYMRQLTVGDVVTGPLQIFHGYEKVRNVV 599
+SK+VAD FNANIYD+IMK+KGLPYLETHAEPYMRQL+VGDVVTGPLQ F+G EKV N+V
Sbjct: 11 ISKTVADAFNANIYDIIMKAKGLPYLETHAEPYMRQLSVGDVVTGPLQTFNGVEKVCNIV 190
Query: 600 FVLKTTSHNGFPVIDEPPFSEAPVLFGIILRHHLLTLLRKKVFMSAPMAMGGDVLRQFSA 659
F+L+TT HNGFPVIDEPP S+APVLFGIILR HLLTLL+KK FMS+PMA GDV+ +FSA
Sbjct: 191 FILRTTGHNGFPVIDEPPISQAPVLFGIILRDHLLTLLKKKAFMSSPMATSGDVINEFSA 370
Query: 660 DDFAKRGSDRGE-RIEDIHLTQEEMDMFIDLHPFTNASPYTVVESMSLGKALILFRELGL 718
DDFAK+GS +G +IEDI L++EEMDMFIDLHPFTNASPYTVVE+MSLGKAL LFRELGL
Sbjct: 371 DDFAKKGSSKGRLKIEDIQLSEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGL 550
Query: 719 RHLLVIPKIPSRSPVVGILTRHDFTAEHILGTHPYLVRSRWKRLRFWQPFL 769
RHLLV+PK RSPVVGILTRHDF +EHILG HP+LVR+ K LRF P+L
Sbjct: 551 RHLLVVPKFSGRSPVVGILTRHDFMSEHILGLHPFLVRNTGKSLRF*HPWL 703
>TC229697 similar to UP|CLCB_ARATH (P92942) Chloride channel protein CLC-b
(AtCLC-b), partial (39%)
Length = 988
Score = 285 bits (729), Expect = 5e-77
Identities = 152/310 (49%), Positives = 216/310 (69%), Gaps = 12/310 (3%)
Frame = +1
Query: 466 AGVFVPIIVTGASYGRFVGMLFGKKSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELT 525
+G+F+PII+ G+ YGR +G+ G +N++ GL+AVLGAAS + GSMR TVSLCVI LELT
Sbjct: 7 SGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELT 186
Query: 526 NNLLLLPLIMMVLLVSKSVADVFNANIYDLIMKSKGLPYLETHAEPYMRQLTVGDVVTGP 585
NNLLLLP+ M+VLL++K+V D FN +IY++I+ KGLP+++ + EP+MR LTVG++V
Sbjct: 187 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVK 366
Query: 586 LQI--FHGYEKVRNVVFVLKTTSHNGFPVIDE---PPF----SEAPVLFGIILRHHLLTL 636
+ HG EKV +V VLK T+HN FPV+D+ PP + L G+ILR HL+
Sbjct: 367 PSVVTLHGVEKVAKIVDVLKNTTHNAFPVMDDGVVPPVVGQANGGTELHGLILRAHLIQA 546
Query: 637 LRKKVFM-SAPMAMGGDVLRQFSADDFAKRGSDRGERIEDIHLTQEEMDMFIDLHPFTNA 695
L+KK F+ +V +F+ + A+R IE++ +T EEM+MF+DLHP TN
Sbjct: 547 LKKKWFLKERRRTEEWEVREKFTWVELAEREGS----IEEVAVTSEEMEMFVDLHPLTNT 714
Query: 696 SPYTVVESMSLGKALILFRELGLRHLLVIPKIPSR--SPVVGILTRHDFTAEHILGTHPY 753
+P+TV+ESMS+ KA+ LFR++GLRHLLV+PK + SPV+GILTR D A++IL P+
Sbjct: 715 TPFTVLESMSVAKAMTLFRQVGLRHLLVVPKYQASGISPVIGILTRQDLLAQNILTVFPH 894
Query: 754 LVRSRWKRLR 763
L +S+ + R
Sbjct: 895 LAKSKGREKR 924
>BE800616 weakly similar to GP|21321024|db chloride channel {Oryza sativa
(japonica cultivar-group)}, partial (16%)
Length = 413
Score = 238 bits (606), Expect = 1e-62
Identities = 111/133 (83%), Positives = 121/133 (90%)
Frame = +1
Query: 319 DVPLVFILGVIGGILGSLYNYLWNKVLRIYNAINEKGTICKILLACVISMFTSCLLFGLP 378
DVP VF+LGVIGGILGSL+N + +KVLRIYN INEKGTI KILLAC+IS+FTSCLLFGLP
Sbjct: 10 DVPPVFVLGVIGGILGSLFNLILSKVLRIYNFINEKGTIFKILLACLISIFTSCLLFGLP 189
Query: 379 WLASCQPCPADPVEPCPTIGRSGIYKKFQCPPGHYNDLASLIFNTNDDAIRNLFSKNTDS 438
WL SC+PCP DP EPCPTIGRSGIYKKFQCPP HYNDLASLIFNTNDDAIRNLFSKNTD
Sbjct: 190 WLTSCRPCPPDPSEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSKNTDD 369
Query: 439 EFQYSSMFIFFIT 451
EF++ S+FI FIT
Sbjct: 370 EFEFKSVFIXFIT 408
>TC234490 weakly similar to UP|Q8LPA2 (Q8LPA2) Chloride channel, partial
(16%)
Length = 419
Score = 231 bits (590), Expect = 7e-61
Identities = 113/137 (82%), Positives = 125/137 (90%)
Frame = +2
Query: 87 GLIGFCNNLAVENLAGVKFVVTSNMMLHKRFSLAFVTFFASNLALTLFATIITAMIAPAA 146
GL+GFCNNLAVENLAG+KFVVTSNMML +RF +AF+ FF SNL LT+FA ITA+IAP A
Sbjct: 8 GLVGFCNNLAVENLAGIKFVVTSNMMLERRFLMAFLVFFVSNLVLTVFACTITALIAPTA 187
Query: 147 AGSGISEVKAYLNGVDAPGIFTLPTLIVKIIGSITAVSSSLHIGKAGPMLHTGACVAALL 206
GSGI EVKAYLNGVDAPGIFT+ TL+VKIIGSITAVSSSL IGKAGPM+HTGACVAALL
Sbjct: 188 TGSGIPEVKAYLNGVDAPGIFTVRTLLVKIIGSITAVSSSLLIGKAGPMVHTGACVAALL 367
Query: 207 GQGGSKRYGLTWKWLRY 223
GQGGSKRYGLTWKWL++
Sbjct: 368 GQGGSKRYGLTWKWLKF 418
>TC230244 similar to UP|CLCB_ARATH (P92942) Chloride channel protein CLC-b
(AtCLC-b), partial (30%)
Length = 709
Score = 218 bits (556), Expect = 6e-57
Identities = 113/217 (52%), Positives = 156/217 (71%), Gaps = 8/217 (3%)
Frame = +1
Query: 435 NTDSEFQYSSMFIFFITGFFLSILSCGVVVPAGVFVPIIVTGASYGRFVGMLFGKKSNLN 494
NT E+Q SS+ IFF L +++ G+ VP+G+F+PII+ G+ YGR +G+L G +N++
Sbjct: 7 NTPLEYQPSSIIIFFALYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGILMGPHTNID 186
Query: 495 HGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVADVFNANIYD 554
GL+AVLGAAS + GSMR TVSLCVI LELTNNLLLLP+ M+VLL++K+V D FN +IY+
Sbjct: 187 QGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE 366
Query: 555 LIMKSKGLPYLETHAEPYMRQLTVGDVVTGPLQI--FHGYEKVRNVVFVLKTTSHNGFPV 612
+I+ KGLP+++ + EP+MR LTVG++V + F G EKV N+V LK T+HNGFPV
Sbjct: 367 IILHLKGLPFMDANPEPWMRNLTVGELVDVKPAVVSFKGVEKVANIVNALKNTTHNGFPV 546
Query: 613 ID------EPPFSEAPVLFGIILRHHLLTLLRKKVFM 643
+D +EA L GIILR HL+ +L+KK F+
Sbjct: 547 MDCGLVPTTGVANEATELHGIILRAHLIQVLKKKWFL 657
>TC220055 homologue to GB|AAC26247.2|6382041|F9D12 Arabidopsis thaliana CLC-d
chloride channel protein (GB:Z71450); coded for by A.
thaliana cDNA T44764 {Arabidopsis thaliana;} , partial
(18%)
Length = 891
Score = 124 bits (310), Expect = 2e-28
Identities = 72/152 (47%), Positives = 98/152 (64%), Gaps = 5/152 (3%)
Frame = +2
Query: 599 VFVLKTTSHNGFPVIDEPPFSEAPVLFGIILRHHLLTLLRKKV-FMSAPMAM----GGDV 653
V +L++ HNGFPVID E P++ G++LR HLL +L+ KV F +P+ GG
Sbjct: 2 VSILRSNKHNGFPVIDHTRSGE-PLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGGRS 178
Query: 654 LRQFSADDFAKRGSDRGERIEDIHLTQEEMDMFIDLHPFTNASPYTVVESMSLGKALILF 713
+R S + FAK S +G I+DIHL+ ++++M+IDL PF N SPY V E MSL K LF
Sbjct: 179 IRHDSGE-FAKPVSSKGICIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLF 355
Query: 714 RELGLRHLLVIPKIPSRSPVVGILTRHDFTAE 745
R+LGLRHL V+P+ S VVG++TR D E
Sbjct: 356 RQLGLRHLFVVPR---PSCVVGLITRKDLLIE 442
>BG359405 similar to GP|4768916|gb| CLC-Nt2 protein {Nicotiana tabacum},
partial (17%)
Length = 421
Score = 119 bits (297), Expect = 7e-27
Identities = 61/133 (45%), Positives = 82/133 (60%)
Frame = +1
Query: 15 LRQPLLSSQRSIINSSSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGSLQIFQYVLM 74
L +PLL R++ SS+ +A+VG V IESLDYEI EN+ FK DWRSR +Q+ QY+ +
Sbjct: 28 LNEPLLKRNRTL--SSNPLALVGEKVSYIESLDYEINENDLFKHDWRSRSRVQVLQYIFL 201
Query: 75 KWLLCFLIGTILGLIGFCNNLAVENLAGVKFVVTSNMMLHKRFSLAFVTFFASNLALTLF 134
KWLL FL+G + G+I NLAVEN+AG K + + +R+ F+ F N LT
Sbjct: 202 KWLLAFLVGLLTGIIATLINLAVENIAGYKLLAVLKYIHKERYLTGFLYFTGINFRLTFV 381
Query: 135 ATIITAMIAPAAA 147
A I+ AP AA
Sbjct: 382 AAILCVCFAPTAA 420
>BE659780 similar to GP|4768916|gb| CLC-Nt2 protein {Nicotiana tabacum},
partial (20%)
Length = 644
Score = 79.0 bits (193), Expect(2) = 9e-24
Identities = 47/120 (39%), Positives = 72/120 (59%), Gaps = 7/120 (5%)
Frame = -2
Query: 603 KTTSHNGFPVID------EPPFSEAPVLFGIILRHHLLTLLRKKVFMSAPMAMGG-DVLR 655
K +HNG V+D +EA L GI R + +L+KK F+ +V
Sbjct: 643 KXXTHNGXXVMDCGLVPTTGVANEATELHGIXXRAXXIQVLKKKWFLKERRRTEEWEVRE 464
Query: 656 QFSADDFAKRGSDRGERIEDIHLTQEEMDMFIDLHPFTNASPYTVVESMSLGKALILFRE 715
+F+ + A+R + IED+ +T+EEM+MF+DLHP TN +P+TV+ESMS+ KA++LFR+
Sbjct: 463 KFTWVELAEREGN----IEDVAVTKEEMEMFVDLHPLTNTTPFTVLESMSVAKAMVLFRQ 296
Score = 50.4 bits (119), Expect(2) = 9e-24
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Frame = -1
Query: 716 LGLRHLLVIPKIPSR--SPVVGILTRHDFTAEHILGTHPYLVRSRWKRLRF 764
+GLRH+LV+PK + SPV+GILTR D A +IL P+L +S+ K ++F
Sbjct: 296 IGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLAKSKRK*IKF 144
>TC220688 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial (13%)
Length = 496
Score = 104 bits (260), Expect = 1e-22
Identities = 52/98 (53%), Positives = 67/98 (68%)
Frame = +3
Query: 15 LRQPLLSSQRSIINSSSQVAIVGANVCPIESLDYEIFENEFFKQDWRSRGSLQIFQYVLM 74
L +PLL R++ SS+ +A+VGA V IESLDYEI EN+ FKQDWRSR Q+ QY+
Sbjct: 207 LNEPLLKRNRTL--SSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRTQVLQYIFW 380
Query: 75 KWLLCFLIGTILGLIGFCNNLAVENLAGVKFVVTSNMM 112
KW L FL+G + G+I NLAVEN+AG KF+ N +
Sbjct: 381 KWTLAFLVGLLTGVIATLINLAVENIAGYKFLAVVNFI 494
>BF071148 weakly similar to GP|1742959|emb CLC-d chloride channel protein
{Arabidopsis thaliana}, partial (14%)
Length = 439
Score = 90.5 bits (223), Expect = 3e-18
Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
Frame = +2
Query: 489 KKSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLLVSKSVADVF 548
KK N++ G YA+LGAASFLGG T+SLCVI++EL++NL PLIM+ LL+SK+ D F
Sbjct: 29 KKLNID*GTYAMLGAASFLGG*KWMTLSLCVIMVELSDNLGYSPLIMLELLISKAEGDAF 208
Query: 549 NANIYDLIMKSKGLPYLETHAEPYMRQLTVGD-VVTGPLQIFHGYEKVRNVVFVLKTTSH 607
N ++YD + KG+ L++ + M+ +T + +G + F V + +L++ H
Sbjct: 209 NESVYDEQAQLKGIALLQSMPKYDMQNMTAHESCESGMVGSFPHVVDVSVLFNILRSNRH 388
Query: 608 NGFPVID 614
N F VID
Sbjct: 389 NDFTVID 409
>AW100482 similar to PIR|T52107|T52 anion channel protein CLC-a [validated] -
Arabidopsis thaliana, partial (16%)
Length = 408
Score = 69.7 bits (169), Expect(3) = 8e-18
Identities = 34/74 (45%), Positives = 49/74 (65%)
Frame = +3
Query: 447 IFFITGFFLSILSCGVVVPAGVFVPIIVTGASYGRFVGMLFGKKSNLNHGLYAVLGAASF 506
I F L +++ G+ VP+ +F+PII G+ Y R +G+L G +N++ GL+AVL AAS
Sbjct: 6 ILFALHCILGLITFGIAVPSWLFLPIIFMGSGYRRLLGILMGPHTNIDQGLFAVLAAASL 185
Query: 507 LGGSMRTTVSLCVI 520
+ GSMR T SL VI
Sbjct: 186 MAGSMRMTASL*VI 227
Score = 34.7 bits (78), Expect(3) = 8e-18
Identities = 13/29 (44%), Positives = 21/29 (71%)
Frame = +2
Query: 542 KSVADVFNANIYDLIMKSKGLPYLETHAE 570
K+ D FN +IY++I+ KGLP+++ H E
Sbjct: 293 KTGGDSFNPSIYEIILHLKGLPFMDAHPE 379
Score = 24.6 bits (52), Expect(3) = 8e-18
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 522 LELTNNLLLLPLIMMVLLVS 541
LEL ++LLLLP+ M LL++
Sbjct: 232 LELDHDLLLLPITMHCLLIA 291
>TC229696 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial (8%)
Length = 453
Score = 75.1 bits (183), Expect = 1e-13
Identities = 36/65 (55%), Positives = 51/65 (78%), Gaps = 2/65 (3%)
Frame = +3
Query: 696 SPYTVVESMSLGKALILFRELGLRHLLVIPKIPSR--SPVVGILTRHDFTAEHILGTHPY 753
+P+TV+ESMS+ KA+ LFR++GLRHLLV+PK + SPV+GILTR D A++IL P+
Sbjct: 6 TPFTVLESMSVAKAMTLFRQVGLRHLLVVPKYQASGISPVIGILTRQDLLAQNILTVFPH 185
Query: 754 LVRSR 758
L +S+
Sbjct: 186 LAKSK 200
>TC223196 similar to UP|Q9XF71 (Q9XF71) CLC-Nt2 protein, partial (8%)
Length = 413
Score = 63.2 bits (152), Expect = 4e-10
Identities = 31/61 (50%), Positives = 37/61 (59%)
Frame = +3
Query: 116 RFSLAFVTFFASNLALTLFATIITAMIAPAAAGSGISEVKAYLNGVDAPGIFTLPTLIVK 175
R+ F+ F N LT A I+ AP AAG GI E+KAYLNGVD P +F TLIVK
Sbjct: 63 RYLTGFLYFTGINFVLTFVAAILCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVK 242
Query: 176 I 176
+
Sbjct: 243 V 245
>AI938566
Length = 215
Score = 58.9 bits (141), Expect = 8e-09
Identities = 24/41 (58%), Positives = 30/41 (72%)
Frame = +2
Query: 720 HLLVIPKIPSRSPVVGILTRHDFTAEHILGTHPYLVRSRWK 760
H+ V+PK R PVVGILTRHDF EH+LG HP ++ +WK
Sbjct: 8 HMCVVPKSQGRPPVVGILTRHDFMPEHVLGLHPDIMPHKWK 130
>TC228289
Length = 1798
Score = 45.8 bits (107), Expect = 7e-05
Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 10/312 (3%)
Frame = +1
Query: 233 LIVCGSAAGIAAAFRAPVGGVLFALEEMASWWRTALLWRAFFTTAIVAIFLRAMIDVCLS 292
L+ G+AAGI++ F APV G FA+E + R FTTA+ I L ++I +S
Sbjct: 28 LVAAGAAAGISSGFNAPVAGCFFAIETVLRPLRAEN--SPPFTTAM--IILASVISSTVS 195
Query: 293 GKCGLFGKGGLIMFDAYSGSLMYHAKDVPLVFILGVIGGILGSLYNYLWNKVLRIYNAIN 352
L G Y + A ++PL ILG++ G++ L +++ I
Sbjct: 196 NV--LQGIQSAFTIPEYD---LKSAAELPLYLILGMLCGVISVALTRLVAWFTKLFKTIQ 360
Query: 353 EKGTICKILLACVISMFTSCLLFGLPWLASCQPCPADPVEPCPTIGRSGIYKKFQCPPGH 412
+K FG+P + CP +G G PG
Sbjct: 361 DK--------------------FGIPTVV------------CPALGGFGAGIIALKYPG- 441
Query: 413 YNDLASLIFNTNDDAIRNLFSKNTDSEFQYSSMFIFFITGFFLSILSCGVVVPAGVFVPI 472
+ F ++ +R S + + + + + + L G + G++ P
Sbjct: 442 ---ILYWGFTNVEEILRTGKSASAPGIWLLAQLVAAKV---IATALCKGSGLVGGLYAPS 603
Query: 473 IVTGASYGRFVG---------MLFGKKSNLNHGLYAVLGAASFLGGSMRTTVSLCVIILE 523
++ GA+ G G + G + YA++G A+ L + ++ +++ E
Sbjct: 604 LMIGAAAGAVFGGFSAEVINSAIPGNTAVAQPPAYALVGMAATLASACSVPLTSVLLLFE 783
Query: 524 LTNNL-LLLPLI 534
LT + +LLPL+
Sbjct: 784 LTKDYRILLPLM 819
>BU551251
Length = 357
Score = 30.4 bits (67), Expect = 3.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 372 CLLFGLPWLASCQPCPADPV 391
CLL LP L +C+PC +DPV
Sbjct: 154 CLL*ALPSLQNCRPCNSDPV 213
>TC225943 similar to UP|NU4C_LOTJA (Q9BBP3) NAD(P)H-quinone oxidoreductase
chain 4, chloroplast (NAD(P)H dehydrogenase, chain 4)
(NADH-plastoquinone oxidoreductase chain 4) , partial
(86%)
Length = 1432
Score = 30.4 bits (67), Expect = 3.1
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +1
Query: 323 VFILGVIGGILGSLYNYLWNKVLRIYNAINEKGTICKILLACVISMFTSCLLFGL 377
V IL ++GG L L+ + NKV++ Y TIC L+ +I+ + C F L
Sbjct: 52 VVILPIVGGSLIFLFPHKGNKVIKWY-------TICICLIDLLITSYVFCYHFEL 195
>TC215708 homologue to UP|Q8GSM7 (Q8GSM7) Hydroxycinnamoyl transferase,
partial (23%)
Length = 601
Score = 30.4 bits (67), Expect = 3.1
Identities = 17/45 (37%), Positives = 24/45 (52%)
Frame = +2
Query: 494 NHGLYAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVL 538
NH L A+ A FLGG + C + + LTN + LL ++ VL
Sbjct: 311 NHWLSAIWNATMFLGGVFIPPGTFCYL*MLLTNGMQLLMGLISVL 445
>BG838979
Length = 689
Score = 29.3 bits (64), Expect = 6.9
Identities = 27/111 (24%), Positives = 49/111 (43%), Gaps = 2/111 (1%)
Frame = -1
Query: 458 LSCGVVVPAGVFVPIIVTGASYGRFVGMLFGKKSN-LNHGLYAVLGAASFLGGSMRTTVS 516
LS G+V + +P +F+ + F SN L H ++ G S RT
Sbjct: 335 LSIGLVFCKSLIIPSENFNNKLNKFLKIFFPTFSNQLTHKIH---------GSSPRT--- 192
Query: 517 LCVIILELTNNLLLLPLIMMVLLVSKSVADVFNANIYDLIMKSKGL-PYLE 566
+++ NN++ P I M + + K + + A+ + K KG+ P+L+
Sbjct: 191 -----IKIFNNVIAFPYIFMWIFIPKLLIIIIEAHKGEHYFKKKGIKPWLQ 54
>CD408658
Length = 422
Score = 29.3 bits (64), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 629 LRHHLLTLLRKKVFMSAPMAMGGDVLR 655
LRHHLL LLR++V MS ++R
Sbjct: 181 LRHHLLALLRQRVMMSCKSVPSVTIMR 261
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.327 0.142 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,592,931
Number of Sequences: 63676
Number of extensions: 583936
Number of successful extensions: 4212
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4199
length of query: 780
length of database: 12,639,632
effective HSP length: 105
effective length of query: 675
effective length of database: 5,953,652
effective search space: 4018715100
effective search space used: 4018715100
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0030.6