Lotus
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0028b.3
         (288 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC225899 similar to UP|O48685 (O48685) Pyruvate dehydrogenase E1...   296  7e-81
TC233409 weakly similar to UP|ODPA_SMIMA (P52900) Pyruvate dehyd...   284  3e-77
TC225898 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase ...   270  7e-73
BF069526 weakly similar to SP|P52902|ODPA Pyruvate dehydrogenase...   199  1e-51
TC225900 homologue to UP|ODPA_PEA (P52902) Pyruvate dehydrogenas...   198  2e-51
TC221704 homologue to UP|O24457 (O24457) Pyruvate dehydrogenase ...   151  3e-37
TC206698 homologue to UP|O24457 (O24457) Pyruvate dehydrogenase ...   119  2e-27
TC205336 similar to UP|Q9FY85 (Q9FY85) Branched-chain alpha keto...    94  9e-20
TC235074 similar to UP|Q9FY85 (Q9FY85) Branched-chain alpha keto...    49  3e-06
TC206696 similar to UP|O24457 (O24457) Pyruvate dehydrogenase E1...    48  5e-06
TC225897 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase ...    38  0.005
TC231391 UP|Q39846 (Q39846) LEA protein, complete                      32  0.33
TC222530 weakly similar to UP|Q9LVF9 (Q9LVF9) Gb|AAB82628.1, par...    31  0.74
TC205914 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, ...    30  0.97
TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)             30  0.97
CF805788                                                               30  1.3
TC228148 similar to UP|Q7YXC8 (Q7YXC8) C. elegans GRD-1 protein ...    30  1.7
TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%)    30  1.7
TC226071 weakly similar to GB|AAM98298.1|22655412|AY142034 At5g0...    29  2.2
TC217088 UP|Q9FQD5 (Q9FQD5) Glutathione S-transferase GST 23  , ...    28  3.7

>TC225899 similar to UP|O48685 (O48685) Pyruvate dehydrogenase E1 alpha
           subunit , partial (40%)
          Length = 700

 Score =  296 bits (758), Expect = 7e-81
 Identities = 147/190 (77%), Positives = 164/190 (85%), Gaps = 1/190 (0%)
 Frame = +3

Query: 1   MALSRLASSSSSSSSTVGSKFLKPLTAAFSLRR-SISSDSNPITIETSVPFTAHNCDPPS 59
           MALSR+ + SS S+       LKPL +  SLRR S+S+ S+P+TIETSVPFT+HNCD PS
Sbjct: 147 MALSRVVAQSSQSN------LLKPLASYLSLRRRSVSTSSDPLTIETSVPFTSHNCDAPS 308

Query: 60  RSVETSTAELHSFFRQMATMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAGITKK 119
           R+VETS+AEL +FF  MA MRRMEIAADSLYKAKLIRGFCHLYDGQEAVA+GMEA IT+K
Sbjct: 309 RAVETSSAELFAFFHDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRK 488

Query: 120 DAIITAYRDHCTFLGRGGTLLEIFSELMGRVDGCSKGKGGSMHFYRKETNFYGGHGIVGA 179
           D +ITAYRDHCTFL RGGTL+EIFSELMGR DGCSKGKGGSMHFYRKE  FYGGHGIVGA
Sbjct: 489 DCVITAYRDHCTFLARGGTLIEIFSELMGRRDGCSKGKGGSMHFYRKEGGFYGGHGIVGA 668

Query: 180 QVPLGCGVAF 189
           QVPLGCG+AF
Sbjct: 669 QVPLGCGLAF 698


>TC233409 weakly similar to UP|ODPA_SMIMA (P52900) Pyruvate dehydrogenase E1
           component alpha subunit, mitochondrial precursor
           (PDHE1-A) (Fragment) , partial (66%)
          Length = 1139

 Score =  284 bits (727), Expect = 3e-77
 Identities = 139/235 (59%), Positives = 172/235 (73%), Gaps = 1/235 (0%)
 Frame = +3

Query: 49  PFTAHNCDP-PSRSVETSTAELHSFFRQMATMRRMEIAADSLYKAKLIRGFCHLYDGQEA 107
           P+  H  D  PS  VET+  +L S F+ M  +R+MEI AD +YKAK I+GF HLY+G+EA
Sbjct: 114 PYDLHRLDKGPSLEVETNKEDLVSAFKTMYEIRQMEIIADKMYKAKKIQGFLHLYNGEEA 293

Query: 108 VAIGMEAGITKKDAIITAYRDHCTFLGRGGTLLEIFSELMGRVDGCSKGKGGSMHFYRKE 167
           V  G+E+GI   D +ITAYRDH   L RGG   ++F+EL G+V G S+GKGGSMH Y KE
Sbjct: 294 VVTGIESGIRPDDHVITAYRDHGFILTRGGNAEQVFAELQGKVTGTSRGKGGSMHMYSKE 473

Query: 168 TNFYGGHGIVGAQVPLGCGVAFAQKYSKDEAVTFALYGDGAANQGQLFEALNIAALWDLP 227
             FYGG+GIVGAQ P+G G+AFA KY+K + V    YGDG+ANQGQLFEA N+AALW LP
Sbjct: 474 GKFYGGNGIVGAQTPVGAGLAFAAKYNKTDQVCITCYGDGSANQGQLFEAYNMAALWKLP 653

Query: 228 AILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEH 282
            I VCENN YGMGT+  RAA S  +Y RGD+VPG+++DGMD LAVK A KFA ++
Sbjct: 654 VIFVCENNKYGMGTSIDRAAASTTFYTRGDFVPGIRIDGMDYLAVKNATKFAADY 818


>TC225898 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1 component
           alpha subunit, mitochondrial precursor  (PDHE1-A) ,
           partial (62%)
          Length = 1250

 Score =  270 bits (689), Expect = 7e-73
 Identities = 125/137 (91%), Positives = 131/137 (95%)
 Frame = +1

Query: 152 GCSKGKGGSMHFYRKETNFYGGHGIVGAQVPLGCGVAFAQKYSKDEAVTFALYGDGAANQ 211
           GCSKGKGGSMHFYRKE  FYGGHGIVGAQVPLGCG+AFAQKY KDE VTF++YGDGAANQ
Sbjct: 1   GCSKGKGGSMHFYRKEGGFYGGHGIVGAQVPLGCGLAFAQKYCKDENVTFSMYGDGAANQ 180

Query: 212 GQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLA 271
           GQLFEALNI+ALWDLP+ILVCENNHYGMGTAEWRAAKSP+YYKRGDYVPGLKVDGMD LA
Sbjct: 181 GQLFEALNISALWDLPSILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALA 360

Query: 272 VKQACKFAKEHALKNGP 288
           VKQACKFAKE ALKNGP
Sbjct: 361 VKQACKFAKEFALKNGP 411


>BF069526 weakly similar to SP|P52902|ODPA Pyruvate dehydrogenase E1
           component alpha subunit  mitochondrial precursor (EC
           1.2.4.1) (PDHE1-A)., partial (39%)
          Length = 469

 Score =  199 bits (506), Expect = 1e-51
 Identities = 98/156 (62%), Positives = 112/156 (70%)
 Frame = +2

Query: 106 EAVAIGMEAGITKKDAIITAYRDHCTFLGRGGTLLEIFSELMGRVDGCSKGKGGSMHFYR 165
           EA A  M+A +T+KD +I  YR HCT L  GGTL+ +  ELM R   CS GK G MH YR
Sbjct: 2   EAFAGCMKANLTRKDCLIITYRYHCTLLTLGGTLIYVLPELMRRHHRCSNGKRGCMHLYR 181

Query: 166 KETNFYGGHGIVGAQVPLGCGVAFAQKYSKDEAVTFALYGDGAANQGQLFEALNIAALWD 225
            E+   GGH I GAQVPL C + FAQKY  DE V  ++YGD AA  GQ FEALNI ALWD
Sbjct: 182 TESGLSGGHEIYGAQVPLRCILTFAQKYCIDENVMLSMYGDRAAYLGQWFEALNIYALWD 361

Query: 226 LPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPG 261
           L +I+VC+NNHYGMGTAEWRAA SP+YYKR DYVPG
Sbjct: 362 LASIMVCQNNHYGMGTAEWRAANSPSYYKREDYVPG 469


>TC225900 homologue to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1
           component alpha subunit, mitochondrial precursor
           (PDHE1-A) , partial (54%)
          Length = 1042

 Score =  198 bits (504), Expect = 2e-51
 Identities = 94/102 (92%), Positives = 97/102 (94%)
 Frame = +2

Query: 187 VAFAQKYSKDEAVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA 246
           V    + SKDE+VTFA+YGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA
Sbjct: 8   VGVCSEKSKDESVTFAMYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA 187

Query: 247 AKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGP 288
           AKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGP
Sbjct: 188 AKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGP 313


>TC221704 homologue to UP|O24457 (O24457) Pyruvate dehydrogenase E1 alpha
           subunit  (At1g01090/T25K16_8) , partial (46%)
          Length = 616

 Score =  151 bits (382), Expect = 3e-37
 Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 7/175 (4%)
 Frame = +2

Query: 83  EIAADSLYKAKLIRGFCHLYDGQEAVAIGMEAGITKKDAIITAYRDHCTFLGRGGTLLEI 142
           ++ A   Y+ K+  GF HLY+GQEAV+ G    + K+D +++ YRDH   L +G     +
Sbjct: 95  DMCAQMYYRGKMF-GFVHLYNGQEAVSTGFINFLKKEDCVVSTYRDHVHALSKGVPARAV 271

Query: 143 FSELMGRVDGCSKGKGGSMHFYRKETNFYGGHGIVGAQVPLGCGVAFAQKYSKD------ 196
            SEL G+  GCS+G+GGSMH + KE N  GG   +   +P+  G AF+ KY ++      
Sbjct: 272 MSELFGKATGCSRGQGGSMHMFSKEHNLIGGFAFIAEGIPVATGAAFSSKYRREVLKEAD 451

Query: 197 -EAVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSP 250
            + VT A +GDG  N GQ +E LN+AALW LP + V ENN + +G +  RA   P
Sbjct: 452 CDHVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDP 616


>TC206698 homologue to UP|O24457 (O24457) Pyruvate dehydrogenase E1 alpha
           subunit  (At1g01090/T25K16_8) , partial (31%)
          Length = 523

 Score =  119 bits (298), Expect = 2e-27
 Identities = 56/134 (41%), Positives = 81/134 (59%), Gaps = 7/134 (5%)
 Frame = +3

Query: 90  YKAKLIRGFCHLYDGQEAVAIGMEAGITKKDAIITAYRDHCTFLGRGGTLLEIFSELMGR 149
           Y+ K+  GF HLY+GQEAV+ G    + K+D++++ YRDH   L +G    E+ SEL G+
Sbjct: 15  YRGKMF-GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPSREVMSELFGK 191

Query: 150 VDGCSKGKGGSMHFYRKETNFYGGHGIVGAQVPLGCGVAFAQKYSKD-------EAVTFA 202
             GC +G+GGSMH + KE N  GG   +G  +P+  G AF+ KY ++       + VT A
Sbjct: 192 ATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKQADCDHVTLA 371

Query: 203 LYGDGAANQGQLFE 216
            +GDG  N GQ +E
Sbjct: 372 FFGDGTCNNGQFYE 413


>TC205336 similar to UP|Q9FY85 (Q9FY85) Branched-chain alpha keto-acid
           dehydrogenase E1 alpha subunit-like protein, partial
           (93%)
          Length = 1642

 Score = 93.6 bits (231), Expect = 9e-20
 Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 2/184 (1%)
 Frame = +1

Query: 104 GQEAVAIGMEAGITKKDAIITAYRDHCTFLGRGGTLLEIFSELMGRVDGCSKGKGGSMHF 163
           G+EAV I   A +   D I+  YR+    L RG TL +   +  G      KG+   +H+
Sbjct: 583 GEEAVNIASAAALAPDDIILPQYREPGVLLWRGFTLQQFVHQCFGNTHDFGKGRQMPIHY 762

Query: 164 YRKETNFYGGHGIVGAQVPLGCGVAFAQKYSKDEAVTFALYGDGAANQGQLFEALNIAAL 223
              + N++     +  Q+P   G A++ K     A      GDGA ++G    A+N AA+
Sbjct: 763 GSNQHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGATSEGDFHAAMNFAAV 942

Query: 224 WDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKE 281
            + P + +C NN + + T      +S     +G    +  ++VDG D LAV  A   A+E
Sbjct: 943 MEAPVVFICRNNGWAISTPVEDQFRSDGIVVKGKAYGIWSIRVDGNDALAVYSAVHTARE 1122

Query: 282 HALK 285
            A+K
Sbjct: 1123IAIK 1134


>TC235074 similar to UP|Q9FY85 (Q9FY85) Branched-chain alpha keto-acid
           dehydrogenase E1 alpha subunit-like protein, partial
           (31%)
          Length = 519

 Score = 48.5 bits (114), Expect = 3e-06
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +2

Query: 176 IVGAQVPLGCGVAFAQKYSKDEAVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 235
           +   Q+    G A++ K  K +A     +GDG +++G    ALN AA+ + P I +C NN
Sbjct: 329 VYSTQISHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAALNFAAVLEAPVIFICRNN 508



 Score = 33.1 bits (74), Expect = 0.15
 Identities = 16/62 (25%), Positives = 28/62 (44%)
 Frame = +3

Query: 110 IGMEAGITKKDAIITAYRDHCTFLGRGGTLLEIFSELMGRVDGCSKGKGGSMHFYRKETN 169
           +   A +   D +   YR+    L RG TL E  ++L   +    KG+    H+  K+ N
Sbjct: 3   VASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNIYDYGKGRQMPAHYGSKKHN 182

Query: 170 FY 171
           ++
Sbjct: 183 YF 188


>TC206696 similar to UP|O24457 (O24457) Pyruvate dehydrogenase E1 alpha
           subunit  (At1g01090/T25K16_8) , partial (43%)
          Length = 765

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 27/66 (40%), Positives = 38/66 (56%), Gaps = 3/66 (4%)
 Frame = +3

Query: 226 LPAILVCENNHYGMGTAEWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHA 283
           LP + V ENN + +G +  RA   P  +K+G    +PG+ VDGMDVL V++  K A   A
Sbjct: 9   LPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLQVREVAKEAVGRA 188

Query: 284 LK-NGP 288
            +  GP
Sbjct: 189 RRVEGP 206


>TC225897 similar to UP|ODPA_PEA (P52902) Pyruvate dehydrogenase E1 component
           alpha subunit, mitochondrial precursor  (PDHE1-A) ,
           partial (32%)
          Length = 820

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 271 AVKQACKFAKEHALKNGP 288
           AVKQACKFAKE ALKNGP
Sbjct: 1   AVKQACKFAKEFALKNGP 54


>TC231391 UP|Q39846 (Q39846) LEA protein, complete
          Length = 2208

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -2

Query: 6   LASSSSSSSSTVGSKFLKPLT-----AAFSLRRSISSDSNPITIETSVPFTAHNCDPPSR 60
           L+ S S SSS +G     P +      A  L  S S+ + P+ +  S+PF+A  C P S 
Sbjct: 716 LSLSLSLSSSLIGF*VPPPFSNVQVITAVVLAPSFSAPTLPLAVSVSLPFSATTCPPLSL 537

Query: 61  SVETSTAELHSFFR 74
            +  S   + S  R
Sbjct: 536 PLSFSVLPITSLVR 495


>TC222530 weakly similar to UP|Q9LVF9 (Q9LVF9) Gb|AAB82628.1, partial (4%)
          Length = 639

 Score = 30.8 bits (68), Expect = 0.74
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -3

Query: 7   ASSSSSSSSTVGSKF--LKPLTAAFSLRRSISSDSNPITIETSVP-FTAHNCDPPSRSVE 63
           ASS+ +SSST+ S +  L P+T+  S R S SS  NP T  + V   T    + PSR   
Sbjct: 259 ASSARASSSTLASSYSPLHPITS--SPRNSSSSTPNPTTRTSRVRCSTRPPTETPSRGTP 86

Query: 64  TSTA 67
            S+A
Sbjct: 85  CSSA 74


>TC205914 weakly similar to UP|NAM8_YEAST (Q00539) NAM8 protein, partial (9%)
          Length = 1513

 Score = 30.4 bits (67), Expect = 0.97
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 172 GGH--GIVGAQVPLGCGVAFAQKYSKDEAVTFAL 203
           GGH   +VG + PLGCGV     Y  DEAV   L
Sbjct: 173 GGHLGAVVGLENPLGCGVG----YELDEAVALGL 84


>TC203787 similar to UP|Q6VBJ3 (Q6VBJ3) Epa4p, partial (6%)
          Length = 1056

 Score = 30.4 bits (67), Expect = 0.97
 Identities = 23/61 (37%), Positives = 32/61 (51%), Gaps = 3/61 (4%)
 Frame = +3

Query: 2   ALSRLASSSSSSSSTVGSKFLKPLTAAFSLRRSISSD---SNPITIETSVPFTAHNCDPP 58
           A S  +SSS SSSS   S    P +++ S   S SS    S+P +  +S PF++    PP
Sbjct: 303 ASSSSSSSSFSSSSAPSSSSSSPASSSSSSSSSSSSSSS*SSPSSSSSSSPFSSAPPAPP 482

Query: 59  S 59
           S
Sbjct: 483 S 485


>CF805788 
          Length = 551

 Score = 30.0 bits (66), Expect = 1.3
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 5   RLASSSSSSSSTVGSKFLKPLTAAFSLRRSISSDSNPITIETSVPFTAHN 54
           +L S+S +  ST+   FLK LTA  S       D + +    S+PFT  N
Sbjct: 228 QLLSNSLNLPSTIAGTFLKGLTARNSGDNC*RLDKSTLISSKSIPFTLQN 79


>TC228148 similar to UP|Q7YXC8 (Q7YXC8) C. elegans GRD-1 protein
           (Corresponding sequence R08B4.1b), partial (3%)
          Length = 1180

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 5/66 (7%)
 Frame = +3

Query: 8   SSSSSSSSTVGSKFLKPLTAAFSLRRS---ISSDSNPITIETSVPFTAHNCDPPSRSV-- 62
           SSS +    +     KP+T A SLRRS   +++++N      S P T  + + PS +V  
Sbjct: 210 SSSDTDEEELPKAKEKPVTGARSLRRSYKNLNNNNNKKPSSNSTPKTGSSGNKPSETVKP 389

Query: 63  ETSTAE 68
           E S AE
Sbjct: 390 EKSKAE 407


>TC224859 weakly similar to UP|Q7TP79 (Q7TP79) Aa2-245, partial (3%)
          Length = 843

 Score = 29.6 bits (65), Expect = 1.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -1

Query: 5   RLASSSSSSSSTVGSKFLKPLTAAFSLRRSISSDSNPITIET 46
           R +SSSSSSS T+ S F  P + AF     + S ++ + ++T
Sbjct: 744 RSSSSSSSSSFTLSSSFSSPSSFAFFCSFPLRSATSSLKVQT 619


>TC226071 weakly similar to GB|AAM98298.1|22655412|AY142034
           At5g01750/T20L15_20 {Arabidopsis thaliana;} , partial
           (81%)
          Length = 1079

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 15/38 (39%), Positives = 24/38 (62%)
 Frame = -2

Query: 27  AAFSLRRSISSDSNPITIETSVPFTAHNCDPPSRSVET 64
           A+  +RRS    S+P+T++T++P T+     PS SV T
Sbjct: 442 ASTRMRRSRRVMSDPLTLKTTLPLTSVTTKLPSESVIT 329


>TC217088 UP|Q9FQD5 (Q9FQD5) Glutathione S-transferase GST 23  , complete
          Length = 1319

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 8   SSSSSSSSTVGSKFLKPLTAAFSLRRSISSDSNPITIETSVPFTAHN 54
           S+S +  ST+   FLK LTA  S       D + +    S+PFT  N
Sbjct: 303 SNSLNLPSTIAGTFLKGLTARNSGDNC*RLDKSTLISSKSIPFTLQN 163


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.319    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,585,783
Number of Sequences: 63676
Number of extensions: 170770
Number of successful extensions: 1206
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of query: 288
length of database: 12,639,632
effective HSP length: 96
effective length of query: 192
effective length of database: 6,526,736
effective search space: 1253133312
effective search space used: 1253133312
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)


Lotus: description of TM0028b.3