BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0028a.11
(492 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC230825 similar to UP|O48683 (O48683) F3I6.9 protein, partial (... 627 e-180
BM892645 153 1e-37
BM108255 78 3e-29
TC230922 113 2e-25
BU547048 PIR|S41689|S41 cytochrome-c oxidase (EC 1.9.3.1) chain ... 86 5e-17
TC217093 70 3e-12
BQ474107 67 2e-11
TC217190 similar to UP|Q761Z6 (Q761Z6) BRI1-KD interacting prote... 62 4e-10
BG551450 weakly similar to GP|16209720|gb| At2g35880/F11F19.21 {... 45 9e-08
TC215604 similar to UP|Q84WL6 (Q84WL6) At3g23090, partial (44%) 52 5e-07
BE608412 47 3e-05
TC215603 similar to UP|Q7XYW3 (Q7XYW3) Seed specific protein Bn1... 43 3e-04
TC231082 weakly similar to UP|O83031 (O83031) Orf509e (Fragment)... 42 6e-04
TC211926 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (8%) 42 6e-04
TC206441 42 8e-04
TC206440 41 0.001
TC226978 40 0.003
TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, p... 39 0.005
TC227815 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphos... 39 0.005
TC225038 similar to UP|Q41025 (Q41025) Histone H1, partial (67%) 39 0.007
>TC230825 similar to UP|O48683 (O48683) F3I6.9 protein, partial (20%)
Length = 1540
Score = 627 bits (1617), Expect = e-180
Identities = 343/485 (70%), Positives = 399/485 (81%), Gaps = 3/485 (0%)
Frame = +3
Query: 5 QMGETAAASNSALQVSVSFGRFENDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYF 64
+MGE AAASN ALQVSVSFGRFENDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYF
Sbjct: 117 KMGEGAAASNPALQVSVSFGRFENDSLSWERWSSFSPNKYLEEVEKCATPGSVAQKKAYF 296
Query: 65 EAHYKKIAARKAELLAQEKETEKDSFGSDDQNGVDLSGNDCGTDAEFDVSNAQGSTTEGV 124
EAHYKK+AARKAELLAQEK+ EKDSFGS++ +G+DLSGN TDAE D+SN ++EGV
Sbjct: 297 EAHYKKVAARKAELLAQEKQREKDSFGSEEHSGIDLSGN---TDAEHDISNNTQGSSEGV 467
Query: 125 EQEISSVGEVSRNLLDALKEEEVAVSRDCYQSSSIEVEESEEQESISHGAEPIDEPEEVV 184
E E SS GE+ + ++ EEE AVSRD YQSSS++V E++E ES SH + IDEPE V
Sbjct: 468 EHETSSAGEIHKTHVNE-SEEEFAVSRD-YQSSSVQV-ENKELESRSHSSYQIDEPEN-V 635
Query: 185 CIKQEE--NLHVEAEDVKEISHVEYKETEKASEVEAKDVKLDHPKESKVASVNRESNAAK 242
C KQ E N ++EAEDVKEISHV YKET KASE E KDVKL+HPKESKV SV++ SNAA+
Sbjct: 636 CKKQVESPNNNIEAEDVKEISHVVYKETGKASEGEVKDVKLNHPKESKVKSVSKGSNAAR 815
Query: 243 TKKKSMLPKSKASQISTPRNSKPAS-TPSKPLTSASSTKKGNSPSLSRKPITSSEESKKV 301
TKKKSMLP SKAS ISTP++SKPAS TP+K +T ASST+KG+SPSL+R+ ITSS ES+K
Sbjct: 816 TKKKSMLPTSKASPISTPKSSKPASTTPTKTVTPASSTRKGSSPSLTRRQITSSGESRKF 995
Query: 302 ANKPLHKSLNLEPSNPDPAPLPTLRKSFIMESMGDKDIVKRAFKTFKTFQNNYSQPKSSG 361
ANKPLH SL+L PSNPDPAP T+R+S IME+MGDKDIVKRA FKTFQN+++QPK+S
Sbjct: 996 ANKPLHMSLSLAPSNPDPAPQSTMRRSLIMENMGDKDIVKRA---FKTFQNSFNQPKTSV 1166
Query: 362 EDRSSVKKQVPSRGTVSKVPTSSSLRKENGRPNKVESKDTRGGNTVQTTLSRKSDIISGK 421
ED+S +KKQVPSRGTVSKVPTS++LRKENGRP KVE+ + GN V+TTL K DI + K
Sbjct: 1167EDKSLIKKQVPSRGTVSKVPTSTTLRKENGRPTKVENL-YQSGNAVRTTLGPKRDIRAEK 1343
Query: 422 GKESSRKLDVSSHAKETPRTRLQSKLKEEKEADMKKLKHNFKATPLPAFYGGQKVSKVRP 481
GKESSRK++ S+ K RTRLQSK+KEEKEA+MK+LKHN K T PAF GQKV K RP
Sbjct: 1344GKESSRKIEEKSNTKGVERTRLQSKVKEEKEAEMKRLKHNVKGTSSPAFNRGQKVVKSRP 1523
Query: 482 EKVDA 486
EK DA
Sbjct: 1524EKGDA 1538
>BM892645
Length = 421
Score = 153 bits (387), Expect = 1e-37
Identities = 88/141 (62%), Positives = 105/141 (74%), Gaps = 6/141 (4%)
Frame = +2
Query: 173 GAEPIDEPEEVVCIKQ----EENLHVEAEDVKEISHVEYKETEKASEVEAKDVKLDHPKE 228
G+ I++ EEVVCI+Q EE+ +VEAEDVKEI H KE +ASE+EAK V LDHPK
Sbjct: 8 GSSQIEKLEEVVCIEQGESKEESRNVEAEDVKEIPHNVNKEPAQASEIEAKYVALDHPK- 184
Query: 229 SKVASVNRESNAAKTKKKSMLP--KSKASQISTPRNSKPASTPSKPLTSASSTKKGNSPS 286
V VNRESNA KTKKKSML K KASQ STPR+S P +TP+K L SASSTK+GNSPS
Sbjct: 185 --VTPVNRESNATKTKKKSMLSTSKPKASQFSTPRSSNPTTTPTKTLASASSTKRGNSPS 358
Query: 287 LSRKPITSSEESKKVANKPLH 307
+S + ITS+ E++KV NK LH
Sbjct: 359 ISWRKITSTAENRKVPNKSLH 421
>BM108255
Length = 485
Score = 78.2 bits (191), Expect(3) = 3e-29
Identities = 38/47 (80%), Positives = 43/47 (90%)
Frame = +1
Query: 4 DQMGETAAASNSALQVSVSFGRFENDSLSWERWSSFSPNKYLEEVEK 50
++MG+TAA SN ALQVSVSFG FENDSLSWE+WS+FSPNKYLEEV K
Sbjct: 127 EKMGKTAA-SNPALQVSVSFGXFENDSLSWEKWSAFSPNKYLEEVXK 264
Score = 65.1 bits (157), Expect(3) = 3e-29
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +2
Query: 46 EEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLAQEKETEKD 88
+++ CATPGSVA KAYFEAHYK IAARKAELLA K+ EKD
Sbjct: 251 KKLXSCATPGSVAXXKAYFEAHYKNIAARKAELLAXAKQMEKD 379
Score = 23.9 bits (50), Expect(3) = 3e-29
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 105 CGTDAEFDVSNAQGSTTEGV 124
CGTDA+ D+S GS EGV
Sbjct: 426 CGTDAKVDMSPTPGS-IEGV 482
>TC230922
Length = 1013
Score = 113 bits (283), Expect = 2e-25
Identities = 64/102 (62%), Positives = 74/102 (71%), Gaps = 2/102 (1%)
Frame = +3
Query: 392 RPNKVESKDTRGGNTVQTTLSRKSDIISGKGKESSRKLDVSSHAKETPRTRLQSKL--KE 449
RP KVE+ D + GN ++TTL K DI + KGKESSRK++ S+AK RTRLQ KL KE
Sbjct: 15 RPTKVENVD-KSGNALRTTLGPKPDIRAEKGKESSRKIEEKSNAKGVERTRLQLKLTVKE 191
Query: 450 EKEADMKKLKHNFKATPLPAFYGGQKVSKVRPEKVDAKTEKP 491
EKEA+MK+LKHN K TP PAFY GQKV K R EK DAKT P
Sbjct: 192 EKEAEMKRLKHNAKGTPSPAFYRGQKVVKSRSEKGDAKT*NP 317
>BU547048 PIR|S41689|S41 cytochrome-c oxidase (EC 1.9.3.1) chain I -
Theileria parva mitochondrion (fragment), partial (2%)
Length = 556
Score = 85.5 bits (210), Expect = 5e-17
Identities = 45/75 (60%), Positives = 52/75 (69%)
Frame = -1
Query: 414 KSDIISGKGKESSRKLDVSSHAKETPRTRLQSKLKEEKEADMKKLKHNFKATPLPAFYGG 473
K DI + KGKE SRK++ ++K RT QSK+KEEKEA+MK KHN K T PAF G
Sbjct: 556 KRDIRAEKGKECSRKIEEKXNSKGVERTXXQSKVKEEKEAEMKXXKHNVKGTSSPAFNRG 377
Query: 474 QKVSKVRPEKVDAKT 488
QKV K RPEK DAKT
Sbjct: 376 QKVVKSRPEKGDAKT 332
>TC217093
Length = 1829
Score = 69.7 bits (169), Expect = 3e-12
Identities = 79/321 (24%), Positives = 133/321 (40%), Gaps = 19/321 (5%)
Frame = +2
Query: 186 IKQEENLHVEAEDVKEISHVEYK-----ETEKASEVEAKDVKLDHPKE--SKVASVNRE- 237
+ E+ HV E KE + E + E + +EV VK++ PK SK++ + +E
Sbjct: 287 VAMEDEKHVIGETTKENINKEAENSCNSEIQTKNEVSEAVVKVEGPKSAASKISKLAKEH 466
Query: 238 ---------SNAAKTKKKSMLPKSKASQISTPRNSKPASTPSKPLTSASSTKKGNSPSLS 288
+N + TK K L + +SQ P SK S P+K KK + +L+
Sbjct: 467 GGKGGVASKNNKSATKDKPNLKSTTSSQTHRPNLSKSLSLPAKS-AGGDGMKKSTNGTLA 643
Query: 289 RKPITSSEESKKVANKPLHKSLNLEPSNPDPAPLPTLRKSFIMESMGDKDIVKRAFKTFK 348
+ + +K A+ L N A T ++ + + K
Sbjct: 644 KPETKHANGAKAEASIRRLSRLTNSEVNSKEAKTNT--------GNSNQRTSLASMISLK 799
Query: 349 TFQNNYSQPKSSGEDRSSVKKQVPSRGTVSKVPTSSSLRKENGRPNKVESKDTRGGNTVQ 408
T ++ S P ++ + ++ +P +S + KE + S T +
Sbjct: 800 TSESGISTPVNAVTKSLTSEESLPV-DQISIPAKTEKPNKEEDDAHSTTSSHTPRRRSSG 976
Query: 409 TTLSRKSDIISGKGKESSRKLDVSSHAKETPRTRLQSKLKEEKEADMKKLKHN--FKATP 466
+ S + + + K KE KL+ KE +T Q K KE +EA++K+L+ FKATP
Sbjct: 977 SGFSFRLEERAEKRKEFFSKLEEKIQEKEAEKTNQQEKSKENQEAEIKQLRKTMTFKATP 1156
Query: 467 LPAFYGGQKVSKVRPEKVDAK 487
+P+FY K P KV+ K
Sbjct: 1157MPSFY------KEPPPKVELK 1201
>BQ474107
Length = 369
Score = 66.6 bits (161), Expect = 2e-11
Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Frame = +1
Query: 128 ISSVGEVSRNLLDALKEEEVAVSRDC------YQSSSIEVEESEEQESISHGAEPIDEPE 181
+ S+G + NL L+ +E+ R QSSS EVE +E ES SH + I E E
Sbjct: 100 VRSIGLMLMNLWRKLQFQEITKVRQLRSRTIFIQSSSFEVE-IKELESRSHSSYQIGEAE 276
Query: 182 EVVCIKQEENLHVEAEDVKEISHVEYKETEKA 213
+V C KQEE+ ++EAEDVKEISHV YKET KA
Sbjct: 277 DV-CKKQEESPNIEAEDVKEISHVVYKETGKA 369
Score = 62.4 bits (150), Expect = 4e-10
Identities = 40/68 (58%), Positives = 47/68 (68%)
Frame = +3
Query: 97 GVDLSGNDCGTDAEFDVSNAQGSTTEGVEQEISSVGEVSRNLLDALKEEEVAVSRDCYQS 156
G+DLSGN T AE DVSN + EGVEQE SSV E+ R ++ EEVAVSRD YQS
Sbjct: 3 GIDLSGN---TGAEHDVSNNTQGSNEGVEQEASSVCEIHRTHVNE-SVEEVAVSRD-YQS 167
Query: 157 SSIEVEES 164
SS+EVE +
Sbjct: 168 SSVEVENN 191
>TC217190 similar to UP|Q761Z6 (Q761Z6) BRI1-KD interacting protein 118
(Fragment), partial (32%)
Length = 1637
Score = 62.4 bits (150), Expect = 4e-10
Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 30/228 (13%)
Frame = +2
Query: 274 TSASSTKKGNSPSLSRKPITSSEESK----------KVANKPLHKSLNLEPSNPDPAPLP 323
+S K+G++ ++ +T S+E + KV P K+ N +P +P +
Sbjct: 68 SSKEEIKEGSNDNIYMNNVTISKEEEAEIIDRTEQLKVGKGPA-KNKNAKPPSPRGSHAS 244
Query: 324 TLRKS----------------FIMESMGDKDIVKRAFKTFKTFQNNYSQPKSSGEDRSSV 367
+++K+ F +S + I R+ + + + ++ S+
Sbjct: 245 SVKKNKDGKDEEVASSVSNGTFASDSHPRQPIKNRSLSDKQARLSKHPGKSNAAHSEESM 424
Query: 368 KKQVPSRGTVSKVPTSSSLR--KENGRPNKVESKDTRGGNTVQTTLSRKSDIISGKGKES 425
+K P +SK +L+ E+ P ++K R G + S K D + + KE
Sbjct: 425 EKTRPQ---LSKKDPHDNLQGEAESSSPTAEDAKPRRVGALPKYGFSFKCDERAERRKEF 595
Query: 426 SRKLDVSSHAKETPRTRLQSKLKEEKEADMKKLKHN--FKATPLPAFY 471
KL+ HAKE + LQ+K KE +EA++K L+ + FKATP+P+FY
Sbjct: 596 YTKLEEKIHAKEVEESNLQAKTKENQEAEIKMLRKSLGFKATPMPSFY 739
>BG551450 weakly similar to GP|16209720|gb| At2g35880/F11F19.21 {Arabidopsis
thaliana}, partial (6%)
Length = 373
Score = 45.4 bits (106), Expect(2) = 9e-08
Identities = 22/36 (61%), Positives = 25/36 (69%)
Frame = +2
Query: 457 KLKHNFKATPLPAFYGGQKVSKVRPEKVDAKTEKPR 492
K+KHN KATPL F+ QK SK PEK DAK +K R
Sbjct: 95 KIKHNIKATPLAVFHRCQKASKSHPEKGDAKIDKWR 202
Score = 28.9 bits (63), Expect(2) = 9e-08
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = +1
Query: 421 KGKESSRKLDVSSHAKETPRTRLQSKLKEEKE 452
+GKE RK++ +AKE R LQ K K K+
Sbjct: 4 RGKEXPRKIEEKLNAKEVERMHLQLKSKVVKD 99
>TC215604 similar to UP|Q84WL6 (Q84WL6) At3g23090, partial (44%)
Length = 1145
Score = 52.4 bits (124), Expect = 5e-07
Identities = 80/361 (22%), Positives = 134/361 (36%), Gaps = 20/361 (5%)
Frame = +2
Query: 150 SRDCYQSSSIEVEESEEQESISHGAEPID-----EPEEVVCIKQEENLHVEAEDVKEISH 204
S +Q S + + Q I+ G E D EP+ VV + + H + H
Sbjct: 89 SNTTHQHSCCIISFFQIQLKIAMGVEDTDICIIKEPDHVV-VYSDGISHDSGHEAGSDHH 265
Query: 205 VEYKETEKASEVEAKDVKLDHPKESKVASVNRESNAAKTKKKSMLPKSKASQISTPRNSK 264
+ E+ +E + KE +V E + K S +S + +
Sbjct: 266 NITESYEQINETTEHHSSEESAKEYEVKECTTEISV------------KVSDVSNVKKCE 409
Query: 265 PASTPSKPLTSASSTKKGNSPSLSRKPITSSEESKKVANKPLHKSLNLEPSNPDPAPLPT 324
T + + K + KP + K + P+ S + P+ P P L T
Sbjct: 410 DKLTSDSEGVLSEKSFKSHKTRCKHKP---RDTGKNGSRPPVTGSAQIRPTVPQPFSLAT 580
Query: 325 -------LRKSFIMESMGD---KDIVKRAFKTFKTF-QNNYSQPKSSGEDRSSVKKQVPS 373
R +F ++ G K + K+ + F QN P S + K+ P
Sbjct: 581 EKRASIATRPAFEEDNKGSNERKSLNKKNVLSPNLFKQNQLKSPVVSRKPLQPDNKKHPD 760
Query: 374 RGTVSKVP--TSSSLRKENGRPNKVESKDTRGGNTVQTTLSRKSDIISGKGKESSRKLDV 431
V T++S+R R TV + +S + K KE KL+
Sbjct: 761 DDDSCSVASITAASVRSIKSR------------TTVASAPVFRSTQRAEKRKEFYTKLEE 904
Query: 432 SSHAKETPRTRLQSKLKEEKEADMKKLKHN--FKATPLPAFYGGQKVSKVRPEKVDAKTE 489
A E + + +++ KEE E +K+L+ + FKA+P+P+FY KV +K+ A
Sbjct: 905 KQQAMEAEKNQSEARTKEEMEEAIKQLRKSLTFKASPMPSFYHEGPPPKVELKKLPATRA 1084
Query: 490 K 490
K
Sbjct: 1085K 1087
>BE608412
Length = 441
Score = 46.6 bits (109), Expect = 3e-05
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Frame = +1
Query: 423 KESSRKLDVSSHAKETPRTRLQSKLKEEKEADMKKLKH--NFKATPLPAFYGGQKVS--- 477
K+ KL+ +AKE ++Q+ +E+ EAD+KKL+ NFKATP+P+FY S
Sbjct: 16 KQFYMKLEEKMYAKEAEINQMQAMSQEKTEADIKKLRKSLNFKATPMPSFYCTPSPSQPH 195
Query: 478 --KVRPEKVDAKTEKPR 492
K +P+ V T +
Sbjct: 196 GNKFQPQAVSNNTRSKK 246
>TC215603 similar to UP|Q7XYW3 (Q7XYW3) Seed specific protein Bn15D14A
(Fragment), partial (29%)
Length = 663
Score = 43.1 bits (100), Expect = 3e-04
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +3
Query: 423 KESSRKLDVSSHAKETPRTRLQSKLKEEKEADMKKLKHN--FKATPLPAFYGGQKVSKVR 480
KE KL+ A E + + +++ KEE E +K+L+ + FKA+P+P+FY KV
Sbjct: 3 KEXXXKLEEKQQAMEAEKNQSEARTKEEMEEAIKQLRKSLTFKASPMPSFYHEGPPPKVE 182
Query: 481 PEKVDAKTEK 490
+K+ A K
Sbjct: 183 LKKLPATRAK 212
>TC231082 weakly similar to UP|O83031 (O83031) Orf509e (Fragment), partial
(13%)
Length = 1383
Score = 42.0 bits (97), Expect = 6e-04
Identities = 49/174 (28%), Positives = 71/174 (40%), Gaps = 7/174 (4%)
Frame = +1
Query: 229 SKVASVNRESNAAKTKKKSML-PKSKASQISTPRNSKPA-STPSKPLTSASSTKKGNSPS 286
S AS + K K S++ P + S P +S A STPS L++ S T +G SP+
Sbjct: 10 STAASKSSSPPTRKPKSSSIINPSTSRSSTPAPESSTMANSTPSPTLSATSGTPRGPSPT 189
Query: 287 LSRKPITSSEESKKVANKPLHKSLNLEPSNPDPAPLPTLRKSFIMESMGDKDIVKRAFKT 346
S P TSS +P P+P PT K++
Sbjct: 190 QSDPPSTSS*S---------------DPPESAPSPNPT----------------KKSSPQ 276
Query: 347 FKTFQNNY----SQPKSSGEDRSSVKKQVPSRGTVS-KVPTSSSLRKENGRPNK 395
K+ Q+NY P S ED SSV+ S T++ K + S+ N P++
Sbjct: 277 RKSPQSNY*KN*GFPIPSSED-SSVRSSAESSSTLTWKRRRACSISSSNASPSE 435
>TC211926 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (8%)
Length = 544
Score = 42.0 bits (97), Expect = 6e-04
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Frame = +2
Query: 190 ENLHVEAEDVKEISHVEYK---ETEKASEVEAKDVKLDHPKESKVASVNRESNAAKTKKK 246
E+ H E ED E+ ++ K E EK EVE + + + ++ S +A
Sbjct: 164 EDSHTEQEDNSEMKEIDGKGEEEKEKEEEVEGDEENEEKEERDELKSKKSTKESAFATPG 343
Query: 247 SMLPKSKASQISTPRNSKPASTPSKPLTSASSTKKGNSPSLSRKPITSSEESKKVANKPL 306
S P + + S P P A S +KGN L P + + SK+ A+ L
Sbjct: 344 SERPTRERKTVERYTVSSPDKCPRSSSIIALSIEKGNGTQLKDIPNVAFKLSKRKADDYL 523
Query: 307 H 307
H
Sbjct: 524 H 526
>TC206441
Length = 989
Score = 41.6 bits (96), Expect = 8e-04
Identities = 52/233 (22%), Positives = 98/233 (41%), Gaps = 18/233 (7%)
Frame = +1
Query: 77 ELLAQEKETEKDSFGSDDQNGVDLSGNDCGTDAEFDVSNAQGSTTEGVEQEISSVGEVSR 136
EL + T++ S ++ + GV T A+ + ST E + S +
Sbjct: 16 ELEKEPSNTDETSPLTESEGGVLKEAQVLETCAQVEEKPEPVSTPVAAEVDESQKEPEKQ 195
Query: 137 NLLDALKEEEVAVS------RDCYQSSSIEVEESEEQESISHGAEPIDEPEEVVCIKQEE 190
+L ++EE+ S + ++ ++ E E ++ + A + ++VV K+EE
Sbjct: 196 SLEQRVEEEKPDTSVVPQHSEESGDATEVKTREQNEAKAATTEAAESVKVDKVVDDKKEE 375
Query: 191 NLHVEAEDVKEISHVEYKETEKASEVEAKDVKLDHPKESKVASVN---------RESNAA 241
+ E++ + +ET AS+ E + V+ K K +V +E++A
Sbjct: 376 KTETKVEEISRAINEPVRET-LASKFEEESVEPGADKVEKEQTVEPEKTEVQATKENDAT 552
Query: 242 KTKKKSMLPKSKASQISTPRNSKPASTPSKPLTSASSTKKGNSPS---LSRKP 291
KT K LPK ++ + +++ S + L A G SPS LS +P
Sbjct: 553 KTSK--DLPKETPAKPAQKQSNNIISKVKQSLVKAKKAITGKSPSSKNLSSEP 705
>TC206440
Length = 855
Score = 40.8 bits (94), Expect = 0.001
Identities = 48/209 (22%), Positives = 87/209 (40%), Gaps = 31/209 (14%)
Frame = +3
Query: 109 AEFDVSNAQGSTTEGVEQEISSVGEVSRNLLDALKEEEVAVS------RDCYQSSSIEVE 162
A+ + Q S E + E+ E+S + A EE+VAV+ + ++ ++ E
Sbjct: 48 ADIKKTPEQASIDEEAKTELKEEREIS---VPAAVEEKVAVAAIDDVDKKEPEAPNVSPE 218
Query: 163 ESEEQESISHGAEP----------------IDEPEEVVCIKQEENLHVEAEDVKEISHVE 206
S+E+E S E +D +V K+EE + E++ +
Sbjct: 219 SSQEEEFESKRVEEQNEAKAATTETVESVKVDNDSSIVDDKKEEKTDSKVEEISRAINEP 398
Query: 207 YKET------EKASEVEAKDVKLDH---PKESKVASVNRESNAAKTKKKSMLPKSKASQI 257
+ET E+ E A V+ + P++++ +ES+A KT K LPK ++
Sbjct: 399 VRETLASKFEEETVEPGADKVEKEQTVEPEKTEEVQATKESDATKTSK--DLPKETPAKP 572
Query: 258 STPRNSKPASTPSKPLTSASSTKKGNSPS 286
+ +++ S + L A G SPS
Sbjct: 573 AQKQSNNIISKVKQSLVKAKKAITGKSPS 659
>TC226978
Length = 1994
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/170 (21%), Positives = 68/170 (39%)
Frame = +3
Query: 159 IEVEESEEQESISHGAEPIDEPEEVVCIKQEENLHVEAEDVKEISHVEYKETEKASEVEA 218
+E+EE + E+ + P DE + K + ++H + D SH+ TE+ S E
Sbjct: 399 VEIEEDKRSEAANKRKMPFDEIRDQK--KHDSDVHADLHDRARASHISI--TEEGSTAEN 566
Query: 219 KDVKLDHPKESKVASVNRESNAAKTKKKSMLPKSKASQISTPRNSKPASTPSKPLTSASS 278
+DV + S ++ S+ +K + A ++ +S T S
Sbjct: 567 EDVADSETENSTSRPISHHSDGSKGFIRVSASSDAAKEVRGSADSNA--------TDLSG 722
Query: 279 TKKGNSPSLSRKPITSSEESKKVANKPLHKSLNLEPSNPDPAPLPTLRKS 328
K+ SSE+ K A S +++P N P P++++S
Sbjct: 723 QKRFTG---------SSEKDFKHAGMTYGASFSVQPVNMLNVPYPSVKES 845
>TC227636 weakly similar to UP|Q9SYP0 (Q9SYP0) F9H16.4 protein, partial (8%)
Length = 1200
Score = 38.9 bits (89), Expect = 0.005
Identities = 39/169 (23%), Positives = 66/169 (38%), Gaps = 2/169 (1%)
Frame = +3
Query: 162 EESEEQESISHGAEPIDEPEEVVCIKQEENLHVEAEDVKEISHVEYKETEKASEVEAKDV 221
E E+++ + EP+ EE I + E E E+ K +E EKA E
Sbjct: 366 ESDEDEDKDKNEEEPVRTKEEEELILKAEKARKEEEEAKLKEKRRLEEIEKAKE------ 527
Query: 222 KLDHPKESKVASVNRESNAAKTKKKSMLPKSKASQISTPRNSKPASTPSKPLTSASSTKK 281
A ++ NA K ++++ L K +++ K A + TS++ T +
Sbjct: 528 ----------ALQRKKRNAEKAQQRAALKAQKEAELKEKEREKRAKKKERRKTSSAVTAE 677
Query: 282 GNSPSLSR--KPITSSEESKKVANKPLHKSLNLEPSNPDPAPLPTLRKS 328
+ + +TS EES + KP + +P P T KS
Sbjct: 678 NTEQESAHTTETLTSVEES-DLTEKP--AEVTKKPQKPSQFTRQTKVKS 815
>TC227815 similar to UP|RIR2_TOBAC (P49730) Ribonucleoside-diphosphate
reductase small chain (Ribonucleotide reductase) (R2
subunit) , complete
Length = 1407
Score = 38.9 bits (89), Expect = 0.005
Identities = 33/129 (25%), Positives = 51/129 (38%), Gaps = 35/129 (27%)
Frame = +2
Query: 229 SKVASVNRESNAAKTKKKSMLPKSKA-----------SQISTPR-----NSKPASTPSKP 272
+++AS +SN K+ K + PK ++ S TP S P S+PS P
Sbjct: 242 TRIASACSQSNTRKSGKCTRKPKPRSGRRRRWTSPRTSATGTPSPTASATSSPTSSPSSP 421
Query: 273 LTSASSTKKG-------------------NSPSLSRKPITSSEESKKVANKPLHKSLNLE 313
ASS++ SPS + P ++ SK + P ++ +
Sbjct: 422 PPMASSSRTSPGASQRRSSSPRPGPSTASRSPSRTSTPRCTASSSKPTSRTPTRRTTSSV 601
Query: 314 PSNPDPAPL 322
PS P PA L
Sbjct: 602 PSTPSPASL 628
>TC225038 similar to UP|Q41025 (Q41025) Histone H1, partial (67%)
Length = 862
Score = 38.5 bits (88), Expect = 0.007
Identities = 30/104 (28%), Positives = 48/104 (45%), Gaps = 3/104 (2%)
Frame = +2
Query: 205 VEYKETEKASEVEAKDVKLDHPKESKVASVNRESN--AAKTKKKSML-PKSKASQISTPR 261
V+ K + K + + VK PK+ A+ S AA KKK++ PK+KA+ +
Sbjct: 368 VKVKNSFKLAPTKPAPVKAAAPKKPTKAATKPASKPKAATPKKKAVAKPKAKAAATTAKP 547
Query: 262 NSKPASTPSKPLTSASSTKKGNSPSLSRKPITSSEESKKVANKP 305
SKPA +K K P+ + P+ + ++ K V KP
Sbjct: 548 KSKPAKVAAK--------KVAAKPAKKKTPVKAVKKPKSVVKKP 655
Score = 32.0 bits (71), Expect = 0.65
Identities = 37/144 (25%), Positives = 58/144 (39%), Gaps = 10/144 (6%)
Frame = +2
Query: 175 EPIDEPEEVVCIKQEENLHVEAEDVKEISHVEYKETE-KASEVEAKDVKLDHPKES---- 229
+P+ P V I + E + + +Y E + K K + L H K+S
Sbjct: 182 KPLSHPPFAVMIAEAIASLKERTGSSQYAITKYIEGKHKELPATYKKLVLVHLKKSVAAG 361
Query: 230 KVASVNRESNAAKTKK---KSMLPKSKASQISTPRNSKPASTPSKPLTSASSTKKGNSPS 286
K+ V A TK K+ PK + P + A+TP K A + K + +
Sbjct: 362 KLVKVKNSFKLAPTKPAPVKAAAPKKPTKAATKPASKPKAATPKK---KAVAKPKAKAAA 532
Query: 287 LSRKPITSSEE--SKKVANKPLHK 308
+ KP + + +KKVA KP K
Sbjct: 533 TTAKPKSKPAKVAAKKVAAKPAKK 604
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.302 0.120 0.317
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,888,948
Number of Sequences: 63676
Number of extensions: 208980
Number of successful extensions: 1681
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 1588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of query: 492
length of database: 12,639,632
effective HSP length: 101
effective length of query: 391
effective length of database: 6,208,356
effective search space: 2427467196
effective search space used: 2427467196
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0028a.11