BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0027.9
(1611 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC211561 weakly similar to UP|O22675 (O22675) Reverse transcript... 145 1e-34
CO982349 127 3e-29
CD417230 weakly similar to GP|2244915|emb| reverse transcriptase... 107 3e-23
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 91 4e-18
TC212765 70 1e-16
AW757033 78 4e-14
TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR ret... 52 3e-13
BE800643 47 7e-13
BM309783 57 9e-13
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 73 1e-12
CF922212 72 3e-12
BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis ... 71 4e-12
BI972659 71 4e-12
BM891241 60 1e-11
TC231922 68 3e-11
BM891637 67 5e-11
BU548706 56 4e-09
CA851073 58 4e-08
BQ453949 58 4e-08
TC222765 53 1e-06
>TC211561 weakly similar to UP|O22675 (O22675) Reverse transcriptase (Fragment)
, partial (59%)
Length = 1077
Score = 145 bits (367), Expect = 1e-34
Identities = 84/256 (32%), Positives = 138/256 (53%)
Frame = +1
Query: 1106 FDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIKD 1165
F K+I+ I+ C+ S+S+ + G+ + F P RG+RQGDP++P+LF + E L ++
Sbjct: 145 FSPKWIKWIEECVKSASISVLVNGSPTAEFLPQRGLRQGDPLTPFLFNIVAEGLNGLMRR 324
Query: 1166 ACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPP 1225
A + +K + VG +G IS L +ADD + F EA+ + I IL +F S +++
Sbjct: 325 AVEENLYKPYLVGANGVPISILQYADDTIFFGEAAKENVEAIKVILRSFELVSNLRINFA 504
Query: 1226 KSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLS 1285
KS F V D + + L +YLG+P+ + ++ +I K +KLS
Sbjct: 505 KS-CFGVFGVTDQWKQEAANYLHCSLLAFPFIYLGIPIGANSRRCHMWDSIIRKCERKLS 681
Query: 1286 GWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKCH 1345
WK +SF GRV+L +S L S+P Y +P V ++ ++ R F+WG D +K
Sbjct: 682 KWK*RHISFGGRVTLIKSVLTSIPIYFFSFFRVPQSVVDKLVKI*RTFLWGGGPDQKKIS 861
Query: 1346 LISWDTICSPKDQGGL 1361
I W+ +C PK++GG+
Sbjct: 862 WIRWEKLCLPKERGGI 909
>CO982349
Length = 795
Score = 127 bits (320), Expect = 3e-29
Identities = 77/242 (31%), Positives = 127/242 (51%)
Frame = +3
Query: 1114 IKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIKDACSDGRWK 1173
I+ C+ S+S+ I + F+P RG+RQGDP++P LF + E L +++A R+
Sbjct: 72 IRGCLHSASVSILVNESPINEFSPQRGLRQGDPLAPLLFNIVAEGLTGLMREAVDRKRFN 251
Query: 1174 AFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFFSK 1233
+F VG++ +S L +ADD + F EA+++ +I IL F ASG K++ +SR F +
Sbjct: 252 SFLVGKNKEPVSILQYADDTIFFEEATMENMKVIKTILRCFELASGLKINFAESR-FGAI 428
Query: 1234 NVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLS 1293
D + L + YLG+P+ + +E + +I K KL+ WK +S
Sbjct: 429 WKPDHWCKEAAEFLNCSMLSMPFSYLGIPIEANPRCREI*DPIIRKCETKLARWKQRHIS 608
Query: 1294 FAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKCHLISWDTIC 1353
GRV+L + L +LP Y P V Q++ + R F+WG + R+ + W+T+C
Sbjct: 609 LGGRVTLINAILTALPIYFFSFFRAPSKVVQKLVNIQRKFLWGGGSXQRRIAWVKWETVC 788
Query: 1354 SP 1355
P
Sbjct: 789 LP 794
>CD417230 weakly similar to GP|2244915|emb| reverse transcriptase like protein
{Arabidopsis thaliana}, partial (7%)
Length = 688
Score = 107 bits (268), Expect = 3e-23
Identities = 56/146 (38%), Positives = 91/146 (61%)
Frame = -3
Query: 1111 IELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLFVLCIERLALTIKDACSDG 1170
++L+ +C+S+++M + W G + F+P+ GVRQ DPI+PYLFVLC+ERL+ I +
Sbjct: 686 VQLVWYCMSTTTMSLLWNGEVLDHFSPNIGVRQRDPIAPYLFVLCLERLSHLINLVMNKK 507
Query: 1171 RWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVF 1230
++ +V R G ISHL F DD++LF EA++DQ +I+ L F ++SG KV+ K++ F
Sbjct: 506 L*RSIQVNRGGLLISHLAFVDDLILFVEANMDQVDVINLTLELFSDSSGAKVNVDKTKSF 327
Query: 1231 FSKNVHDGKADQIVHALGIQKTTNLG 1256
+ G G++KT+ +G
Sbjct: 326 LFPKMLIG---------GLRKTSQVG 276
Score = 78.6 bits (192), Expect = 2e-14
Identities = 38/84 (45%), Positives = 56/84 (66%)
Frame = -2
Query: 1231 FSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVS 1290
FSKNV+ + I LG+Q T +LG YLGVP+ H + F+F+IDKV K+ S WK +
Sbjct: 324 FSKNVNWWVEEDISSGLGLQSTDDLGKYLGVPIFHKNPTSHTFDFIIDKVNKRFSRWKSN 145
Query: 1291 TLSFAGRVSLTQSCLLSLPAYVMQ 1314
LS GR++LT+ + +LP+++MQ
Sbjct: 144 LLSMVGRLTLTK*VV*ALPSHIMQ 73
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase homolog
T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 90.9 bits (224), Expect = 4e-18
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Frame = +2
Query: 1318 IPIGVCQEIERLCRNFIWGSTADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKL 1377
+P + ++E L R F+WG AD RK ++W T+C PK +GGLG DLRT N + K
Sbjct: 17 LP*KIIAKLESLQRRFLWGGEADSRKIAWVNWKTVCLPKAKGGLGIKDLRTFNTTLLGKW 196
Query: 1378 AWNILADKDSLWTQVLKAKYKFNPGLRA--PPLPKPPDSPTWKGICKAWPI-----MEKG 1430
W++ + W +VL++KY G RA DS WK + K + +++
Sbjct: 197 RWDLFYIQQEPWAKVLQSKY---GGWRALEEGSSGSKDSAWWKDLIKTQQLQRNIPLKRE 367
Query: 1431 VKWTLGNGIKVSFWRDNW 1448
W +G G ++ FW D W
Sbjct: 368 TIWKVGGGDRIKFWEDLW 421
>TC212765
Length = 637
Score = 69.7 bits (169), Expect(2) = 1e-16
Identities = 43/117 (36%), Positives = 59/117 (49%)
Frame = +3
Query: 1149 PYLFVLCIERLALTIKDACSDGRWKAFKVGRSGPSISHLLFADDVVLFAEASVDQAILID 1208
PYLFVLC+ERLAL I D S W+ V + +L+ DD+ LF A D A L
Sbjct: 15 PYLFVLCMERLALCIHDLTSQ*IWRPILVSDDNRLVPYLMLVDDIFLFINAIGD*AYLAS 194
Query: 1209 EILHNFCEASGQKVSPPKSRVFFSKNVHDGKADQIVHALGIQKTTNLGMYLGVPLLH 1265
L NF + G K++ KS ++ S + D I + L I +LG YL + +H
Sbjct: 195 LTL*NFFQTFGLKLNLDKSSMYCS*RMAPVLRDLISNTLNIVHAPSLGKYLCLKFIH 365
Score = 37.0 bits (84), Expect(2) = 1e-16
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +2
Query: 1284 LSGWKVSTLSFAGRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRK 1343
L+ WK L+ A + LT L + P Y M+ + +P + Q I++ R IW
Sbjct: 416 LASWKGKLLNQASKHCLT*LVLHAFPIYPMEASWLPQSIFQAIDKASRVTIWNKVGASLS 595
Query: 1344 CHLISWDTICSP 1355
H +S T P
Sbjct: 596 WHSVS*STASKP 631
>AW757033
Length = 441
Score = 77.8 bits (190), Expect = 4e-14
Identities = 45/132 (34%), Positives = 74/132 (55%)
Frame = -2
Query: 1132 SESFNPSRGVRQGDPISPYLFVLCIERLALTIKDACSDGRWKAFKVGRSGPSISHLLFAD 1191
+ F+P RG+RQGDP++P LF + E L +++A + +K+F VG+ +S L +AD
Sbjct: 440 TREFSPHRGLRQGDPLAPLLFNIAAEGLTGLMREAVARNHYKSFAVGKYKKPVSILQYAD 261
Query: 1192 DVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFFSKNVHDGKADQIVHALGIQK 1251
D + F EA+++ +I IL F ASG K++ KSR F + +V D + +
Sbjct: 260 DTIFFGEATMENVRVIKTILRGFELASGLKINFAKSR-FGAISVPD*WRKEAAEFMNCSL 84
Query: 1252 TTNLGMYLGVPL 1263
+ YLG+P+
Sbjct: 83 LSLPFSYLGIPI 48
>TC233727 similar to UP|Q9FKH8 (Q9FKH8) Similarity to non-LTR retroelement
reverse transcriptase, partial (7%)
Length = 956
Score = 52.4 bits (124), Expect(2) = 3e-13
Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = -2
Query: 1185 SHLLFADDVVLFAEASVDQAILIDEILHNFCEASGQKVSPPKSRVFFSKNVHDGKADQIV 1244
SH++ ADD+++F + + + + ++ GQ +S KS++F G+ +++
Sbjct: 451 SHVMHADDIMIFCKGTSRNVHNLINFFQLYKDSFGQVISKHKSKIFIGSI--PGQRLRVI 278
Query: 1245 HALGIQKTTNLGM-YLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLSFAGRVSLTQS 1303
L +++ Y GVP+ ++ + + DK++ KL+ WK S LS GR+ L S
Sbjct: 277 SDLLQYFHSDIPFNYFGVPIFKGKPTRRHLYCVADKIKCKLASWKGSILSIMGRIQLVNS 98
Query: 1304 CLLSLPAY 1311
+ + Y
Sbjct: 97 VIHGMLLY 74
Score = 42.4 bits (98), Expect(2) = 3e-13
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -3
Query: 1098 VATLQFFGFDDKFIELIKWCISSSSMMISWRGNYSESFNPSRGVRQGDPISPYLF-VLCI 1156
++ L FG+ F I+ + S+ + IS G F+ RGVRQGDP+SP L+ C+
Sbjct: 708 ISVLNKFGYSHTFCNWIRVILLSAKLSISVNGEPVGFFSCQRGVRQGDPLSPSLYRQRCL 529
Query: 1157 ER 1158
E+
Sbjct: 528 EQ 523
>BE800643
Length = 379
Score = 47.4 bits (111), Expect(2) = 7e-13
Identities = 25/76 (32%), Positives = 37/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 1494 DVCRRIRALNPPHLERGEDEPFWGLSPDGAFSLNSVFLILLP--PPPVSYEKTFEHVWNF 1551
+VC I A+NPP ++ +D P W S +G S+ + + L P F+ +W +
Sbjct: 153 NVCSTIAAINPP-VQGYKDTPIWCTSRNGMLSVKTAYWYLAGYYDNPRDESGDFKMIWRY 329
Query: 1552 RGPPRAQAVLWKTAHG 1567
GP R LWK HG
Sbjct: 330 EGPQRVCLFLWKLMHG 377
Score = 46.2 bits (108), Expect(2) = 7e-13
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +1
Query: 1443 FWRDNWIPNMGPITSFMPDVHSEAWNANLPVAAFLENGDWNWNSLSQLLP 1492
FW D WIP P++S M V NL V+A+ + WNW L+ +LP
Sbjct: 4 FWTDRWIPGFQPLSSMM-QVQIPPQECNLAVSAYSFHDGWNWRGLNNILP 150
>BM309783
Length = 433
Score = 57.0 bits (136), Expect(2) = 9e-13
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = +2
Query: 1336 GSTADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKA 1395
G RK H++ W + P GG+G CDL +NQA + K+ W SLW VL+
Sbjct: 8 GDNDGGRKHHVVGWKAMIMP*HSGGVGMCDLTIMNQACLMKIGWAFRMGDGSLWADVLRG 187
Query: 1396 KYKFNPGLRAPPLPKPPDSP 1415
Y N LR + K D P
Sbjct: 188 *YGQN*FLRDSVVVKSTDPP 247
Score = 36.2 bits (82), Expect(2) = 9e-13
Identities = 15/48 (31%), Positives = 25/48 (51%)
Frame = +3
Query: 1415 PTWKGICKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDV 1462
P WK I K P + +W + NG + W D W+ ++ + +FM D+
Sbjct: 243 PLWKSIVKL*PNIINVERWIVNNGRSIRAW*DKWVNDITILKAFM*DM 386
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 72.8 bits (177), Expect = 1e-12
Identities = 33/97 (34%), Positives = 51/97 (52%)
Frame = +2
Query: 1296 GRVSLTQSCLLSLPAYVMQTTPIPIGVCQEIERLCRNFIWGSTADHRKCHLISWDTICSP 1355
GRV+L +S L +LP + IP + ++ L R F+WG T H + + W IC+P
Sbjct: 8 GRVTLIKSVLSALPIXXLSFFKIPQRIVDKLVTLQRQFLWGGTQHHNRIPWVKWADICNP 187
Query: 1356 KDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQV 1392
K GGLG DL N A + W + ++ + LW ++
Sbjct: 188 KIDGGLGIKDLSNFNAALRGRWIWGLASNHNQLWARL 298
>CF922212
Length = 445
Score = 71.6 bits (174), Expect = 3e-12
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Frame = -2
Query: 1318 IPIGVCQEIERLCRNFIWGSTADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKL 1377
+P V ++ RL + F+WG +K ++WD++C PK++ GLG DLR N A + K
Sbjct: 441 VPNKVLDKLVRLQQWFLWGGGLGQKKIAWVNWDSVCLPKEKEGLGNRDLRKFNYALLGKR 262
Query: 1378 AWNILADKDSLWTQVLKAKYKFNPGLRAPPLPKPPDSPTWKGICKAWPIMEKGVKW---- 1433
WN+ + L +VL +KYK L K +S W+ I E G W
Sbjct: 261 RWNLFHHQGELGARVLDSKYKRWRNLDEERRVK-SESFWWQEISFITHSTEDG-SWFEKR 88
Query: 1434 ----TLGNGIKVSFWRDNW 1448
LG KV FW D W
Sbjct: 87 TKTGRLGCRAKVRFWEDGW 31
>BU090318 weakly similar to GP|9743345|gb| F21J9.30 {Arabidopsis thaliana},
partial (1%)
Length = 422
Score = 70.9 bits (172), Expect = 4e-12
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 2/142 (1%)
Frame = +3
Query: 1343 KCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPG 1402
K H SW +CSPK GGLG L +N++ + K N+ + L +V+++KYK
Sbjct: 3 KVHWTSWKALCSPKKSGGLGLRLLSHMNKSLLMKST*NMCTKPNDL*VRVVRSKYK*GKD 182
Query: 1403 LRAPPLPKPPDSPTWKGICKAW-PIMEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPD 1461
+ PK + W+GI W I + +GNG V FW+D W+ G +
Sbjct: 183 ILP*IDPKKTGTNFWQGIVHCWEKITHDNIARKIGNGRSVHFWKDVWVLQEGKLID--QR 356
Query: 1462 VHSEAWNANLPVAAFLE-NGDW 1482
++ N ++PV F+ +G W
Sbjct: 357 LNFVVHNDDIPVCFFVNASG*W 422
>BI972659
Length = 453
Score = 70.9 bits (172), Expect = 4e-12
Identities = 52/156 (33%), Positives = 80/156 (50%), Gaps = 4/156 (2%)
Frame = +1
Query: 1198 EASVDQAILIDEILHNFCEASGQKVSPPKSR---VFFSKN-VHDGKADQIVHALGIQKTT 1253
EAS D I++ +L F SG +++ KS+ V F N HD A Q+++ +
Sbjct: 7 EASWDNIIVLKSMLRGFEMVSGLRINYAKSQFGIVGFQPNWAHD--AAQLLNCRQLDIPF 180
Query: 1254 NLGMYLGVPLLHSILSKENFNFLIDKVRKKLSGWKVSTLSFAGRVSLTQSCLLSLPAYVM 1313
+ YLG+P+ S+ + LI+K + KLS W LS GRV+L +S L +LP Y++
Sbjct: 181 H---YLGMPIAVKASSRMVWEPLINKFKAKLSKWNQKYLSMGGRVTLIKSVLNALPIYLL 351
Query: 1314 QTTPIPIGVCQEIERLCRNFIWGSTADHRKCHLISW 1349
IP + ++ L R F+WG H + ISW
Sbjct: 352 SFFKIPQRIVDKLVSLQRTFMWGGNQHHNR---ISW 450
>BM891241
Length = 407
Score = 60.1 bits (144), Expect(2) = 1e-11
Identities = 22/62 (35%), Positives = 36/62 (57%)
Frame = -2
Query: 1336 GSTADHRKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKA 1395
G DH+K + W+ +C PK +GGLG D+ N A + K W + +D+ LW +++ +
Sbjct: 406 GGDHDHKKIPWVKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQQLWARIINS 227
Query: 1396 KY 1397
KY
Sbjct: 226 KY 221
Score = 29.3 bits (64), Expect(2) = 1e-11
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 1426 IMEKGVKWTLGNGIKVSFWRDNWI 1449
I + + W +G G K++FW D W+
Sbjct: 123 IFHQYMSWKVGCGDKINFWTDKWL 52
>TC231922
Length = 803
Score = 68.2 bits (165), Expect = 3e-11
Identities = 44/194 (22%), Positives = 82/194 (41%), Gaps = 10/194 (5%)
Frame = -3
Query: 1427 MEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHSEAWNANLPVA---AFLENG-DW 1482
+ + + W +G G K+ FW+D+W+ + +++ + NL ++ F +N W
Sbjct: 723 IHQNMVWRVGCGDKIKFWQDSWLSEGCNLQQKYNQLYTISRQ*NLTISKMGKFSQNARSW 544
Query: 1483 NWNSLSQLLPDDVCRRIRALNP----PHLERGEDEPFWGLSPDGAFSLNSVFLILLPP-P 1537
+ +L + + +N + D FW G +S S + +L+P
Sbjct: 543 EFKWRRRLFDYEYAMAVDFMNEISGISIQNQAHDSMFWKADSSGVYSTKSAYRLLMPSIS 364
Query: 1538 PVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNM-TYDSTCPRCLEEEESV 1596
P + F+ +W+ + PPRA W+ RL T +R++ D CP C + E
Sbjct: 363 PAPSRRIFQILWHLKIPPRAAVFSWRLFLDRLPTRGNLSRRSIPIQDIMCPLCGCQHEEA 184
Query: 1597 MHAIRDCECVKHVW 1610
H C+ K +W
Sbjct: 183 GHLFFHCKMTKGLW 142
>BM891637
Length = 427
Score = 67.4 bits (163), Expect = 5e-11
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Frame = -1
Query: 1342 RKCHLISWDTICSPKDQGGLGFCDLRTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNP 1401
+K ISW C+ D GGLG D++ +N A + K W + LW ++L +KYK
Sbjct: 418 KKIAWISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLMFHQPHQLWNRILISKYKGWR 239
Query: 1402 GLRAPPLPKPPDSPTWKGI-----CKAWPIMEKGVKWTLGNGIKVSFWRDNWIPNMGPIT 1456
GL P K SP W + ++ W +G G ++ FW D+W+ + P+
Sbjct: 238 GLDQGP-QKYYFSPWWADLRAINQHQSMIAASNQFCWKVGRGDQILFWEDSWVDDGTPLK 62
Query: 1457 SFMPDVHSEAWNANLPVA 1474
P+++ + N +A
Sbjct: 61 DQFPELYRLSSQRNFIMA 8
>BU548706
Length = 647
Score = 56.2 bits (134), Expect(2) = 4e-09
Identities = 31/100 (31%), Positives = 49/100 (49%)
Frame = +2
Query: 1473 VAAFLENGDWNWNSLSQLLPDDVCRRIRALNPPHLERGEDEPFWGLSPDGAFSLNSVFLI 1532
+ A ++G WN++ L ++LP V I + P +E G D S +G F+L S++
Sbjct: 227 IEATAQDGSWNYDFLEEMLPSHVVCIICGMLLPSIENGNDSLI*KFSTNGNFNLASIY-- 400
Query: 1533 LLPPPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRLLTN 1572
F+ +W+ GP R + LWK+AH L TN
Sbjct: 401 -------RNXXLFKSIWDRPGPKRVKLFLWKSAHDALPTN 499
Score = 24.6 bits (52), Expect(2) = 4e-09
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = +1
Query: 1579 NMTYDSTCPRCLEEEESVMHAIRDCECVKHV 1609
++ Y C C + E +HA DC V
Sbjct: 511 SLKYXXKCSLCQQRXEITVHAXXDCSTAXQV 603
>CA851073
Length = 633
Score = 57.8 bits (138), Expect = 4e-08
Identities = 30/102 (29%), Positives = 49/102 (47%), Gaps = 2/102 (1%)
Frame = +1
Query: 1511 EDEPFWGLSPDGAFSLNSVFLILLP-PPPVSYEKTFEHVWNFRGPPRAQAVLWKTAHGRL 1569
+D W P G +S S + IL+ VS F+ +W + PPRA W+ RL
Sbjct: 25 QDTMVWKADPCGVYSTKSAYRILMTCNRHVSEANIFKTIWKLKIPPRAAVFSWRLIKDRL 204
Query: 1570 LTNKERVKRNMT-YDSTCPRCLEEEESVMHAIRDCECVKHVW 1610
T ++RN++ ++ CP C E+E H +C+ + +W
Sbjct: 205 PTRHNLLRRNVSIQENECPLCGYEQEEADHLFFNCKMTRGLW 330
>BQ453949
Length = 450
Score = 57.8 bits (138), Expect = 4e-08
Identities = 32/97 (32%), Positives = 52/97 (52%), Gaps = 2/97 (2%)
Frame = +3
Query: 1516 WGLSPDGAFSLNSVFLILLPPPPVSYEKT-FEHVWNFRGPPRAQAVLWKTAHGRLLTNKE 1574
WG + DG++S S + L + E + F+++WN + PPRA A + R+ T
Sbjct: 42 WGSNSDGSYSTKSAYNFLKNEDSQTIEDSAFKNIWNLKLPPRACAFS*RIF*NRIPTKVN 221
Query: 1575 RVKRNMTYDST-CPRCLEEEESVMHAIRDCECVKHVW 1610
+R++ S+ CP C EEEE+V H + C +H+W
Sbjct: 222 LRRRHVKLPSSNCPLCDEEEETVGHVMYSCIKTRHLW 332
>TC222765
Length = 959
Score = 52.8 bits (125), Expect = 1e-06
Identities = 60/251 (23%), Positives = 89/251 (34%), Gaps = 8/251 (3%)
Frame = +3
Query: 1367 RTINQAYMAKLAWNILADKDSLWTQVLKAKYKFNPGLRAPPLPKPPDSPTWKGICKAWPI 1426
R +N ++ KLA ++ KD LW +VL+ KY + + P + K ++ T
Sbjct: 30 RRVNDTFLMKLAQDLCISKDKLWVKVLRRKYDYGKHI-IPQMNKATNAST---------- 176
Query: 1427 MEKGVKWTLGNGIKVSFWRDNWIPNMGPITSFMPDVHSEAWNANLPVAAFLENGDWNWNS 1486
W I + FW D W+ M H + + ENGDW+
Sbjct: 177 -----*WKFEAFITLRFWIDEWLLKMS---------HCDL*KI---IYVVFENGDWDVQY 305
Query: 1487 LSQLLPD--DVCRRIRALNPPHLERGEDEPFWGLSPDGAFSLNSVFLILLPPPPVSY--- 1541
LS L D + + H AFS VFLI Y
Sbjct: 306 LSYLFQDHGNCPSKTTQCG*HHCM-------------VAFSKWKVFLIFRLQFRSFYLG* 446
Query: 1542 ---EKTFEHVWNFRGPPRAQAVLWKTAHGRLLTNKERVKRNMTYDSTCPRCLEEEESVMH 1598
E F+ +W + + ++WK LTN + L ES +H
Sbjct: 447 LNEEGIFDLIWQWSDQECFRVIIWKIGQRAFLTNAFLFFTKLFRIVPFVLTLNVAESTIH 626
Query: 1599 AIRDCECVKHV 1609
AIRD VK++
Sbjct: 627 AIRDSGVVKYL 659
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.341 0.150 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,011,985
Number of Sequences: 63676
Number of extensions: 1603629
Number of successful extensions: 13706
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 12796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13612
length of query: 1611
length of database: 12,639,632
effective HSP length: 110
effective length of query: 1501
effective length of database: 5,635,272
effective search space: 8458543272
effective search space used: 8458543272
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0027.9