BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.7
(303 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC224923 emb|X02623.1|GMRN18S Soybean (Glycine max) 18S ribosoma... 130 5e-46
TC224991 homologue to UP|S25K_SOYBN (P10742) Stem 31 kDa glycopr... 130 7e-31
CK606126 130 7e-31
TC224925 homologue to UP|Q43453 (Q43453) G.max mRNA from stress-... 130 7e-31
TC224879 homologue to gb|AF223066.1|AF223066 Humulus lupulus 26S... 72 7e-22
TC214608 homologue to gb|AF036494.1|AF036494 Eucryphia lucida la... 97 1e-20
BE822937 97 1e-20
TC214495 homologue to emb|X52320.1|AT3RRNA Arabidopsis thaliana ... 97 1e-20
TC214497 96 2e-20
TC224948 homologue to gb|M83259.1|LEARR18S Leucostoma persoonii ... 86 3e-17
TC224913 similar to UP|Q9XET5 (Q9XET5) Metallothionein-like prot... 82 3e-16
TC214610 homologue to gb|AF036494.1|AF036494 Eucryphia lucida la... 81 7e-16
CK605537 76 2e-14
BI941739 similar to GP|16930529|gb| CDH1-D {Gallus gallus}, part... 70 1e-12
TC214611 homologue to gb|AF036494.1|AF036494 Eucryphia lucida la... 60 6e-11
TC224888 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-li... 48 6e-06
BE659603 similar to PIR|T05148|T051 protein kinase homolog F18E5... 47 1e-05
BI944385 similar to GP|17381240|gb| AT5g09790/F17I14_20 {Arabido... 44 9e-05
TC224918 UP|Q81I91 (Q81I91) Small, acid-soluble spore protein ga... 43 2e-04
BI942004 43 2e-04
>TC224923 emb|X02623.1|GMRN18S Soybean (Glycine max) 18S ribosomal RNA,
complete
Length = 3227
Score = 130 bits (327), Expect(2) = 5e-46
Identities = 53/60 (88%), Positives = 57/60 (94%)
Frame = -3
Query: 244 GKERIASKRDEPTGEHQRQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
G+ERIA +RDEPTG H+R+TDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTC PMDPR
Sbjct: 1479 GQERIAGRRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 1300
Score = 100 bits (248), Expect = 1e-21
Identities = 52/77 (67%), Positives = 59/77 (76%)
Frame = -2
Query: 95 RDSAIHTKYRISLRSSSMRDDNDSSAGSPTETLLRLLLPLNDKVQWTSHNVASSEPPTLP 154
R+SA H + R+ ++ ND SAGSPTETLLRLLLPLNDKVQWTSHNVA SEP T P
Sbjct: 2623 RNSARHDATQ---RNLTLVSPNDPSAGSPTETLLRLLLPLNDKVQWTSHNVAGSEPLTSP 2453
Query: 155 QSEHFTGPFNRLRSRSL 171
QSEHFTGPFNR R++
Sbjct: 2452 QSEHFTGPFNR*ERRAV 2402
Score = 88.6 bits (218), Expect = 3e-18
Identities = 45/68 (66%), Positives = 51/68 (74%)
Frame = -1
Query: 163 FNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSSQSVNPYYVWTCCSSFINPRISPLTM 222
F+RLRSRSLTELT QIAPP KNGHAPP IESRKSSQSVNPYYVWT S ++S
Sbjct: 2111 FSRLRSRSLTELTRQIAPPTKNGHAPPPIESRKSSQSVNPYYVWTW*VSPCWVKLSRRLH 1932
Query: 223 KYECPQLS 230
+ CP ++
Sbjct: 1931 SWWCPSVN 1908
Score = 72.0 bits (175), Expect(2) = 5e-46
Identities = 33/38 (86%), Positives = 35/38 (91%)
Frame = -1
Query: 209 CSSFINPRISPLTMKYECPQLSLSIITPMPKAKTIGKE 246
CSSFINPRISPLTMKYECP+LSL IITP+PKA TIG E
Sbjct: 1697 CSSFINPRISPLTMKYECPRLSLLIITPIPKANTIGSE 1584
>TC224991 homologue to UP|S25K_SOYBN (P10742) Stem 31 kDa glycoprotein
precursor (Vegetative storage protein VSP25) (Fragment),
partial (16%)
Length = 904
Score = 130 bits (327), Expect = 7e-31
Identities = 53/60 (88%), Positives = 57/60 (94%)
Frame = +1
Query: 244 GKERIASKRDEPTGEHQRQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
G+ERIA +RDEPTG H+R+TDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTC PMDPR
Sbjct: 37 GQERIAGRRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 216
>CK606126
Length = 592
Score = 130 bits (327), Expect = 7e-31
Identities = 53/60 (88%), Positives = 57/60 (94%)
Frame = +3
Query: 244 GKERIASKRDEPTGEHQRQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
G+ERIA +RDEPTG H+R+TDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTC PMDPR
Sbjct: 39 GQERIAGRRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 218
>TC224925 homologue to UP|Q43453 (Q43453) G.max mRNA from stress-induced gene
(H4), complete
Length = 1041
Score = 130 bits (327), Expect = 7e-31
Identities = 53/60 (88%), Positives = 57/60 (94%)
Frame = +3
Query: 244 GKERIASKRDEPTGEHQRQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
G+ERIA +RDEPTG H+R+TDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTC PMDPR
Sbjct: 39 GQERIAGRRDEPTGAHRRRTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCPPMDPR 218
>TC224879 homologue to gb|AF223066.1|AF223066 Humulus lupulus 26S ribosomal RNA
gene, partial sequence; 18S ribosomal RNA gene, internal
transcribed spacer 1, 5.8S ribosomal RNA gene, internal
transcribed spacer 2 and 26S ribosomal RNA gene, complete
sequence; and 18S ribosomal RNA gene, partial sequence,
partial (5%)
Length = 1911
Score = 72.0 bits (175), Expect(2) = 7e-22
Identities = 33/38 (86%), Positives = 35/38 (91%)
Frame = -2
Query: 209 CSSFINPRISPLTMKYECPQLSLSIITPMPKAKTIGKE 246
CSSFINPRISPLTMKYECP+LSL IITP+PKA TIG E
Sbjct: 1424 CSSFINPRISPLTMKYECPRLSLLIITPIPKANTIGSE 1311
Score = 49.3 bits (116), Expect(2) = 7e-22
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = -1
Query: 244 GKERIASKRDEPTGEHQRQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
G+ERIA +RDEPTG H+R+TDRP NY+G HQTC M R
Sbjct: 1206 GQERIAGRRDEPTGAHRRRTDRPR--------------------NYQGSNHQTCPQMQQR 1087
>TC214608 homologue to gb|AF036494.1|AF036494 Eucryphia lucida large subunit
26S ribosomal RNA gene, partial sequence, partial (14%)
Length = 689
Score = 96.7 bits (239), Expect = 1e-20
Identities = 46/66 (69%), Positives = 51/66 (76%)
Frame = -3
Query: 13 VSKHAETARAAIHNHGSGHNGALTLSGAPFQGTWARSATEDASLDYNSDALGDRFSWWAL 72
+ K ++ A GSGH+GALTLSGAPFQGTWARSATEDAS DYNSDA GDRFSWWA
Sbjct: 273 IPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSDAEGDRFSWWAF 94
Query: 73 PGRRAL 78
PG A+
Sbjct: 93 PGSLAV 76
>BE822937
Length = 539
Score = 96.7 bits (239), Expect = 1e-20
Identities = 46/66 (69%), Positives = 51/66 (76%)
Frame = +3
Query: 13 VSKHAETARAAIHNHGSGHNGALTLSGAPFQGTWARSATEDASLDYNSDALGDRFSWWAL 72
+ K ++ A GSGH+GALTLSGAPFQGTWARSATEDAS DYNSDA GDRFSWWA
Sbjct: 300 IPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSDAEGDRFSWWAF 479
Query: 73 PGRRAL 78
PG A+
Sbjct: 480 PGSLAV 497
>TC214495 homologue to emb|X52320.1|AT3RRNA Arabidopsis thaliana genes for
5.8S rRNA and 25S rRNA with 18S rRNA fragment, partial
(12%)
Length = 862
Score = 96.7 bits (239), Expect = 1e-20
Identities = 46/66 (69%), Positives = 51/66 (76%)
Frame = -1
Query: 13 VSKHAETARAAIHNHGSGHNGALTLSGAPFQGTWARSATEDASLDYNSDALGDRFSWWAL 72
+ K ++ A GSGH+GALTLSGAPFQGTWARSATEDAS DYNSDA GDRFSWWA
Sbjct: 682 IPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSDAEGDRFSWWAF 503
Query: 73 PGRRAL 78
PG A+
Sbjct: 502 PGSLAV 485
Score = 78.2 bits (191), Expect = 4e-15
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = -2
Query: 73 PGRRALNLMASGATCVQRLNGSRDSAIHTKYRISLRSSSMRD 114
PGRRAL LMASGATCVQRL+GSRDSAIHTKYRISLRSSSM++
Sbjct: 177 PGRRALGLMASGATCVQRLDGSRDSAIHTKYRISLRSSSMQE 52
>TC214497
Length = 625
Score = 96.3 bits (238), Expect = 2e-20
Identities = 44/51 (86%), Positives = 46/51 (89%)
Frame = -2
Query: 28 GSGHNGALTLSGAPFQGTWARSATEDASLDYNSDALGDRFSWWALPGRRAL 78
GSGH+GALTLSGAPFQGTWARSATEDAS DYNSDA GDRFSWWA PG A+
Sbjct: 228 GSGHDGALTLSGAPFQGTWARSATEDASPDYNSDAEGDRFSWWAFPGSLAV 76
>TC224948 homologue to gb|M83259.1|LEARR18S Leucostoma persoonii 18S
ribosomal RNA, partial (41%)
Length = 754
Score = 85.5 bits (210), Expect = 3e-17
Identities = 34/43 (79%), Positives = 36/43 (83%)
Frame = -1
Query: 261 RQTDRPNPRSNYELFNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
R+T RP PR NYELFN NN NIRYWSWNYRGCWHQTC P+ PR
Sbjct: 664 RRTGRPGPRFNYELFNHNNFNIRYWSWNYRGCWHQTCPPIVPR 536
>TC224913 similar to UP|Q9XET5 (Q9XET5) Metallothionein-like protein, partial
(70%)
Length = 502
Score = 82.0 bits (201), Expect = 3e-16
Identities = 41/56 (73%), Positives = 45/56 (80%)
Frame = -1
Query: 163 FNRLRSRSLTELTTQIAPPNKNGHAPPHIESRKSSQSVNPYYVWTCCSSFINPRIS 218
F+RLRSRSLTELT QIAPP KNGHAPP IESRKSSQSVNP YV C S ++ +S
Sbjct: 322 FSRLRSRSLTELTRQIAPPTKNGHAPPPIESRKSSQSVNPLYVCICLSLSLSLSLS 155
>TC214610 homologue to gb|AF036494.1|AF036494 Eucryphia lucida large subunit
26S ribosomal RNA gene, partial sequence, partial (8%)
Length = 426
Score = 80.9 bits (198), Expect = 7e-16
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = -3
Query: 13 VSKHAETARAAIHNHGSGHNGALTLSGAPFQGTWARSATEDASLDYNSDALGDRFS 68
+ K ++ A GSGH+GALTLSGAPFQGTWARSATEDAS DYNSDA GDRFS
Sbjct: 226 IPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDASPDYNSDAEGDRFS 59
>CK605537
Length = 249
Score = 75.9 bits (185), Expect = 2e-14
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = -1
Query: 275 FNCNNLNIRYWSWNYRGCWHQTCSPMDPR 303
FNCNNLNIRYWSWNYRGCWHQTC PMDPR
Sbjct: 102 FNCNNLNIRYWSWNYRGCWHQTCPPMDPR 16
>BI941739 similar to GP|16930529|gb| CDH1-D {Gallus gallus}, partial (8%)
Length = 417
Score = 70.1 bits (170), Expect = 1e-12
Identities = 32/42 (76%), Positives = 35/42 (83%)
Frame = -3
Query: 130 LLLPLNDKVQWTSHNVASSEPPTLPQSEHFTGPFNRLRSRSL 171
L LPLNDKVQWTSHNVA S+P T PQSEHFTGPFNR R++
Sbjct: 292 LSLPLNDKVQWTSHNVAGSDPLTSPQSEHFTGPFNR*ERRAV 167
>TC214611 homologue to gb|AF036494.1|AF036494 Eucryphia lucida large subunit
26S ribosomal RNA gene, partial sequence, partial (7%)
Length = 368
Score = 60.1 bits (144), Expect(2) = 6e-11
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -2
Query: 13 VSKHAETARAAIHNHGSGHNGALTLSGAPFQGTWARSATEDAS 55
+ K ++ A GSGH+GALTLSGAPFQGTWARSATEDAS
Sbjct: 229 IPKQPDSPTAPRGATGSGHDGALTLSGAPFQGTWARSATEDAS 101
Score = 24.3 bits (51), Expect(2) = 6e-11
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -3
Query: 58 YNSDALGDRFS 68
YNSDA GDRFS
Sbjct: 93 YNSDAEGDRFS 61
>TC224888 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-like protein,
partial (37%)
Length = 941
Score = 47.8 bits (112), Expect = 6e-06
Identities = 20/21 (95%), Positives = 21/21 (99%)
Frame = -1
Query: 209 CSSFINPRISPLTMKYECPQL 229
CSSFINPRISPLTMKYECP+L
Sbjct: 65 CSSFINPRISPLTMKYECPRL 3
>BE659603 similar to PIR|T05148|T051 protein kinase homolog F18E5.20 -
Arabidopsis thaliana, partial (3%)
Length = 551
Score = 46.6 bits (109), Expect = 1e-05
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1
Query: 128 LRLLLPLNDKVQWTSHNVASSEPPTLP 154
+ L+PLNDKVQWTSHNVA SEP T P
Sbjct: 457 ITFLIPLNDKVQWTSHNVAGSEPLTSP 537
>BI944385 similar to GP|17381240|gb| AT5g09790/F17I14_20 {Arabidopsis
thaliana}, partial (23%)
Length = 394
Score = 43.9 bits (102), Expect = 9e-05
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = -2
Query: 43 QGTWARSATEDASLDYNSDALGDRFSWWALPGRRAL 78
+G+ A + S DYNSDA GDRFSWWA PG A+
Sbjct: 183 EGSEAERSVIMLSPDYNSDAEGDRFSWWAFPGSLAV 76
>TC224918 UP|Q81I91 (Q81I91) Small, acid-soluble spore protein gamma-type,
partial (98%)
Length = 377
Score = 43.1 bits (100), Expect = 2e-04
Identities = 20/23 (86%), Positives = 21/23 (90%)
Frame = +3
Query: 163 FNRLRSRSLTELTTQIAPPNKNG 185
F+RLRSRSLTELT QIAPP KNG
Sbjct: 303 FSRLRSRSLTELTRQIAPPTKNG 371
>BI942004
Length = 421
Score = 42.7 bits (99), Expect = 2e-04
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = -3
Query: 55 SLDYNSDALGDRFSWWALPGRRAL 78
S DYNSDA GDRFSWWA PG A+
Sbjct: 125 SPDYNSDAEGDRFSWWAFPGSLAV 54
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.128 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,570,589
Number of Sequences: 63676
Number of extensions: 280525
Number of successful extensions: 2088
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 2071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2085
length of query: 303
length of database: 12,639,632
effective HSP length: 97
effective length of query: 206
effective length of database: 6,463,060
effective search space: 1331390360
effective search space used: 1331390360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0026.7