BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0026.4
(161 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC225156 32 0.13
TC232981 UP|Q9LLR0 (Q9LLR0) Carboxyl transferase alpha subunit ... 28 1.9
TC234186 similar to UP|Q9VWG5 (Q9VWG5) CG14219-PA, partial (3%) 27 3.2
TC222317 UP|Q9LLQ8 (Q9LLQ8) Carboxyl transferase alpha subunit ... 27 4.2
TC221619 similar to GB|AAP37732.1|30725420|BT008373 At1g14690 {A... 27 4.2
TC208589 similar to GB|AAF79467.1|8778459|AC022492 F1L3.21 {Arab... 27 5.5
TC222319 UP|Q39833 (Q39833) Alfa-carboxyltransferase precursor (... 26 7.2
TC211237 weakly similar to UP|Q8H3A4 (Q8H3A4) ABC transporter pe... 26 7.2
TC205463 UP|Q39804 (Q39804) BiP isoform B, complete 26 7.2
>TC225156
Length = 916
Score = 32.0 bits (71), Expect = 0.13
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Frame = +2
Query: 48 SVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEHQIDEKMEE---FEALKAALKQADPE 104
+VKT + S L++ L+ REL R+ + HQI KM+ A ++ + E
Sbjct: 161 AVKTLSKPVASRLKQQAALHPRFRELIVRMAQSNHQITTKMQRRIYGHATDVEIRPLNEE 340
Query: 105 GSVGALKALVDKL------------------STTAREELDIRQEKSRLETQQEDVLRRME 146
+V A L+ +L + AR+E +QE ++ + E++ +E
Sbjct: 341 KAVQAAVDLIGELFVFSVAGVLLIFEVQRSARSEARKEEQRKQELQDVKQKNENLAEEVE 520
Query: 147 PLRAR 151
L+ R
Sbjct: 521 LLKHR 535
>TC232981 UP|Q9LLR0 (Q9LLR0) Carboxyl transferase alpha subunit , complete
Length = 2799
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/63 (23%), Positives = 31/63 (48%)
Frame = +3
Query: 89 EEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPL 148
E FEALKA +K + L K+ +E ++++ K +E Q E ++ + +
Sbjct: 2073 ETFEALKAEIKGVGASSASDLDDELKKKIIEFIKEVKEVKEVKEVIENQIESLVNSSDDI 2252
Query: 149 RAR 151
+++
Sbjct: 2253 KSK 2261
>TC234186 similar to UP|Q9VWG5 (Q9VWG5) CG14219-PA, partial (3%)
Length = 568
Score = 27.3 bits (59), Expect = 3.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 37 INQLLSRNIIASVKTPLQEFLSLLREAVP 65
++ LL NIIA++ +PL FLSLL P
Sbjct: 84 LHSLLVSNIIANLVSPLSLFLSLLFSIYP 170
>TC222317 UP|Q9LLQ8 (Q9LLQ8) Carboxyl transferase alpha subunit , complete
Length = 2521
Score = 26.9 bits (58), Expect = 4.2
Identities = 16/63 (25%), Positives = 31/63 (48%)
Frame = +3
Query: 89 EEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPL 148
E FEALKA +K A + L K+ E ++++ K +E Q E ++ + +
Sbjct: 2100 ETFEALKAEIKGAGASSASDLDDELKKKIVGFMIELKEVKEVKEVIENQIESLVNSSDDI 2279
Query: 149 RAR 151
+++
Sbjct: 2280 KSK 2288
>TC221619 similar to GB|AAP37732.1|30725420|BT008373 At1g14690 {Arabidopsis
thaliana;} , partial (33%)
Length = 1044
Score = 26.9 bits (58), Expect = 4.2
Identities = 29/130 (22%), Positives = 65/130 (49%), Gaps = 7/130 (5%)
Frame = +2
Query: 24 HSSLSLAE-ELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTARVFFAEH 82
H +++ E EL L+ L +I + +KT + + L ++ +T V +
Sbjct: 296 HQTVAAKEAELATLMAALGEHDIHSPIKTE--------KRSASLKQKLASITPWVEELKK 451
Query: 83 QIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTARE---ELDIR---QEKSRLET 136
+ DE++++FE +KA +++ G + ++ + LS+T E +L +R + ++ L T
Sbjct: 452 KKDERLKQFEDVKAQIEKI--SGEIFGFHSVNNALSSTTVEDDQDLSLRRLNEYQTHLRT 625
Query: 137 QQEDVLRRME 146
Q++ R++
Sbjct: 626 LQKEKSDRLQ 655
>TC208589 similar to GB|AAF79467.1|8778459|AC022492 F1L3.21 {Arabidopsis
thaliana;} , partial (14%)
Length = 843
Score = 26.6 bits (57), Expect = 5.5
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +1
Query: 116 KLSTTAREELDIRQEKSRLETQQEDVLRRMEP 147
K+ TAR E IRQ K +L+ +Q+ L P
Sbjct: 538 KIGFTARVEAKIRQFKGKLQKKQQSSLGAFSP 633
>TC222319 UP|Q39833 (Q39833) Alfa-carboxyltransferase precursor (Carboxyl
transferase alpha subunit) , complete
Length = 2588
Score = 26.2 bits (56), Expect = 7.2
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 89 EEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQEDVLRRMEPL 148
E FEALKA +K A + L K+ E ++++ K +E Q E ++ + +
Sbjct: 2081 ETFEALKAEIKGAGASSASDLDDELKKKIVEFMIELKEVKEVKEVIENQIESLVNSSDDI 2260
Query: 149 R 149
+
Sbjct: 2261 K 2263
>TC211237 weakly similar to UP|Q8H3A4 (Q8H3A4) ABC transporter permease
protein-like protein, partial (13%)
Length = 655
Score = 26.2 bits (56), Expect = 7.2
Identities = 8/22 (36%), Positives = 18/22 (81%)
Frame = -1
Query: 88 MEEFEALKAALKQADPEGSVGA 109
+++ ++ ++ L Q+DPEGS+G+
Sbjct: 286 VDKLKSFRSQLNQSDPEGSIGS 221
>TC205463 UP|Q39804 (Q39804) BiP isoform B, complete
Length = 2383
Score = 26.2 bits (56), Expect = 7.2
Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Frame = +1
Query: 31 EELTGLINQLLSRNIIASVKTPLQEFLSLLREAVPLYEEHRELTAR----------VFFA 80
EEL L+NQ S + +E ++REA EE +++ R V+
Sbjct: 1648 EELRALVNQKRSPITNEKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNM 1827
Query: 81 EHQIDEKMEEFEALKAALKQADPEGSVGALKALVDKLSTTAREELDIRQEKSRLETQQ-E 139
++QI +K + + L++ K +K+ T +E L+ + +E + E
Sbjct: 1828 KNQISDKDKLADKLESDEK---------------EKIETAVKEALEWLDDNQSMEKEDYE 1962
Query: 140 DVLRRME 146
+ L+ +E
Sbjct: 1963 EKLKEVE 1983
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.317 0.132 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,180,049
Number of Sequences: 63676
Number of extensions: 53167
Number of successful extensions: 261
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of query: 161
length of database: 12,639,632
effective HSP length: 90
effective length of query: 71
effective length of database: 6,908,792
effective search space: 490524232
effective search space used: 490524232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Lotus: description of TM0026.4