TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.17
         (369 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja...   152  8e-45
TC213121                                                               33  0.024
BF596280                                                               30  2.3
AI856336                                                               29  3.0
TC216238                                                               29  3.9
CO981225                                                               29  3.9

>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
           cultivar-group)}, partial (5%)
          Length = 617

 Score =  152 bits (384), Expect(2) = 8e-45
 Identities = 86/149 (57%), Positives = 102/149 (67%)
 Frame = +2

Query: 27  TFSAAIRSMGMIVLNVASSGIASLLLPGGRTAHSRFCIPLQTDKTATCNIKQDSLRENLL 86
           T SA +RS G++  +     +ASLLLP G TAHS F IPL     +TCNI Q S R  LL
Sbjct: 38  TLSAGMRSKGLMSSSCLKR-LASLLLPRG*TAHSTFSIPLVIKDDSTCNINQGSARSKLL 214

Query: 87  ICAKFIIWDEAPMLNKNCFEALNRTLCDIMRQEDESNMDKPFGGKVVVLGGDFRQILPVI 146
           +  K IIWDE P++NK CFEAL+RTL DIM  +++ N  KPFGGK VVLGGDFRQILPVI
Sbjct: 215 LHTKLIIWDETPVMNKFCFEALDRTLQDIMASQNKDNATKPFGGK-VVLGGDFRQILPVI 391

Query: 147 PKGGRQDIVSATVNSSDLWKYCKVLKLTK 175
            KG RQDIV + +N+S      KVLKL K
Sbjct: 392 RKGSRQDIVGSAINASK-----KVLKLKK 463



 Score = 46.2 bits (108), Expect(2) = 8e-45
 Identities = 29/58 (50%), Positives = 37/58 (63%)
 Frame = +1

Query: 175 KNMRLCTTGSPELATEIKEFAD*ILKIGDGDFESNERGESDIEIPKDLLIHDSENPLL 232
           KNMRL TT + E   +I+EF D IL I DG+ +  + GE  I+IPK+LL     NPLL
Sbjct: 460 KNMRLGTTNNNEDRDDIREFVDWILMIRDGNRDEEDEGE--IDIPKNLL-----NPLL 612


>TC213121 
          Length = 713

 Score = 33.1 bits (74), Expect(2) = 0.024
 Identities = 17/28 (60%), Positives = 20/28 (70%)
 Frame = +2

Query: 27  TFSAAIRSMGMIVLNVASSGIASLLLPG 54
           T S+ I S   IVL +ASSGI S+LLPG
Sbjct: 527 TLSSTIHSNSGIVLTMASSGILSMLLPG 610



 Score = 21.9 bits (45), Expect(2) = 0.024
 Identities = 11/19 (57%), Positives = 12/19 (62%)
 Frame = +3

Query: 1   FTFCMDMEELAKILSGIHY 19
           F F MDM  LA+ LSG  Y
Sbjct: 477 FIFSMDMVALARPLSGKLY 533


>BF596280 
          Length = 439

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
 Frame = +1

Query: 239 IPIWCRT*RLKSFWKDDAYCVL----HWNVLRKLIILCLIYYQI 278
           +PIWC T* +  FW+   + VL    HW+    L + C   Y+I
Sbjct: 184 VPIWCLT*-I*LFWRAQQFIVLNGWFHWSCCVALTMTCFR*YEI 312


>AI856336 
          Length = 469

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 19 YLNVASSGTFSAAIRSMGMIVLNVASSGIASLLLPGGR 56
          Y+ V+++ T S A     M +LN   SG+ASL+   GR
Sbjct: 29 YIQVSTANTVSQATSGC*MQILNTTPSGLASLIALCGR 142


>TC216238 
          Length = 1821

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 255  DAYCVLHWNVLRKLIILCLIYYQII 279
            D YC LH N+L  L+I   +++Q++
Sbjct: 1089 DQYCHLHLNILSSLLIPAFLFHQLL 1163


>CO981225 
          Length = 754

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 19/58 (32%), Positives = 25/58 (42%)
 Frame = +2

Query: 5   MDMEELAKILSGIHYLNVASSGTFSAAIRSMGMIVLNVASSGIASLLLPGGRTAHSRF 62
           + +    K LS I +LN A+S  F A    + MI     SSG    +L       SRF
Sbjct: 506 LQLTSFLKFLSAIIFLNCAASSHFPAKAYKLNMIT*VAESSGSRRKMLSAAIIPISRF 679


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.342    0.152    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,814,268
Number of Sequences: 63676
Number of extensions: 219824
Number of successful extensions: 1613
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of query: 369
length of database: 12,639,632
effective HSP length: 99
effective length of query: 270
effective length of database: 6,335,708
effective search space: 1710641160
effective search space used: 1710641160
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 60 (27.7 bits)