TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0026.15
         (145 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CF922776                                                               28  2.0
TC212852 homologue to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-...    27  3.4
TC229129 similar to UP|Q6NM52 (Q6NM52) At4g15770, complete             27  4.5
TC215889 homologue to PIR|T09261|T09261 JUN kinase-activation-do...    26  5.9
TC208519 similar to UP|Q99NH6 (Q99NH6) BZIP protein ATF7, partia...    26  5.9
TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich gly...    26  7.7

>CF922776 
          Length = 615

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (58%)
 Frame = -3

Query: 121 LEGELWNWEDPPDDELRARSFV 142
           + G LWNW +P   EL +  FV
Sbjct: 79  INGALWNWAEPNSGELFSSKFV 14


>TC212852 homologue to UP|Q9SXF7 (Q9SXF7) Amino acid transporter-like protein
           1, partial (19%)
          Length = 672

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 21/85 (24%), Positives = 35/85 (40%), Gaps = 5/85 (5%)
 Frame = -1

Query: 47  RGRWCETYLMNG-----RVCLPYAPRSFELPIVVGSHQLLNMKSEPEKDPLELVPDDENE 101
           R + C  Y++       RV LPY+  +F  PI+  S  L   K +P  D      + + +
Sbjct: 405 RKKTCTNYIIRPLGNA*RVALPYSACAFAWPIIKNSIGLEEFKFKPIIDNAPNTSNGKGQ 226

Query: 102 HYVDSKLMSKPMEEEELPPLEGELW 126
              + +    P+E     P+E   W
Sbjct: 225 AKSNPQPTQNPIE----VPIEAIFW 163


>TC229129 similar to UP|Q6NM52 (Q6NM52) At4g15770, complete
          Length = 661

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 7/35 (20%), Positives = 18/35 (51%)
 Frame = -1

Query: 24  WVNDEHQVRRIYVGSAAVRSFDQRGRWCETYLMNG 58
           W+   ++ R+++  S+++  +     WC T +  G
Sbjct: 628 WIKTNYKTRKMHQSSSSILKYSPTSAWCRTTIPFG 524


>TC215889 homologue to PIR|T09261|T09261 JUN kinase-activation-domain-binding
           protein homolog - alfalfa {Medicago sativa;} , partial
           (98%)
          Length = 1420

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 20  RDRAWVNDEHQVRRIYVGSAAV 41
           RD+ W ND H  +R+ + + A+
Sbjct: 211 RDKPWANDPHYFKRVKISALAL 276


>TC208519 similar to UP|Q99NH6 (Q99NH6) BZIP protein ATF7, partial (6%)
          Length = 783

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/87 (18%), Positives = 36/87 (40%), Gaps = 8/87 (9%)
 Frame = -3

Query: 50  WCETYLMNGRVCLPYAPRSFELPIVVGSHQLLNMKSEP--------EKDPLELVPDDENE 101
           WC+T +   +  +PY   + ++     ++ ++N K  P          D   L+P  +  
Sbjct: 748 WCQTLITGTKFSVPYHT*NLDIHNYNNNNNIINHKILPLCICV*NDLNDTSLLLPSSQAN 569

Query: 102 HYVDSKLMSKPMEEEELPPLEGELWNW 128
           H  ++ +++KP +       +   W W
Sbjct: 568 HQ-NASVLNKPTKSGNNMVAKLRRWRW 491


>TC224792 homologue to UP|Q39865 (Q39865) Hydroxyproline-rich glycoprotein
           (Fragment), partial (86%)
          Length = 688

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = -3

Query: 6   RTGHSWEIILHDEDRDRAWVN-----DEHQVRRIYVGSAAVRSFDQRGRWCETYLMNGRV 60
           R    WE++  D D  +  V      +E +   + VGS + R  ++RG   E    N  V
Sbjct: 359 REDEEWEMVEEDFDSSKEVVENGSSREEEEREMVVVGSGSSRGEEERGMVVEEIYSNREV 180


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.317    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,414,890
Number of Sequences: 63676
Number of extensions: 101857
Number of successful extensions: 471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of query: 145
length of database: 12,639,632
effective HSP length: 88
effective length of query: 57
effective length of database: 7,036,144
effective search space: 401060208
effective search space used: 401060208
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)