TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0024.11
         (148 letters)

Database: GMGI 
           63,676 sequences; 37,918,896 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CD411706                                                               28  2.1
TC204711 similar to UP|ATP7_ARATH (Q9SJ12) Probable ATP synthase...    27  3.6
BE022165 similar to PIR|T31068|T31 N-methyl-D-aspartate receptor...    27  4.7
TC233787 similar to UP|Q7XAV5 (Q7XAV5) Dehydration responsive el...    26  6.2
TC214662                                                               26  8.1
TC210519 weakly similar to UP|Q6NMK2 (Q6NMK2) At5g49400, partial...    26  8.1
BE020344                                                               26  8.1

>CD411706 
          Length = 630

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
 Frame = +3

Query: 92  LVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSGHARRKAANSC--HAYTDSTRESEINL 147
           ++E    RIF  ++ S   L +S+   + Y GH+  +A +    H    ++RE E  L
Sbjct: 237 ILERSNMRIFSDTRGSPESLNKSTLHFVGYKGHSAERACSLIVPHPTVQTSREREREL 410


>TC204711 similar to UP|ATP7_ARATH (Q9SJ12) Probable ATP synthase 24 kDa
           subunit, mitochondrial precursor  , partial (86%)
          Length = 1143

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 8/34 (23%), Positives = 22/34 (64%)
 Frame = -2

Query: 18  YDFSTIKFRNHVHQGILREILASEFQNSKQISKI 51
           Y + ++KF  H+H+ +L+ +++ + +  +  SK+
Sbjct: 356 YSYGSLKFVLHLHKNVLQHLISLKGRRGRLFSKV 255


>BE022165 similar to PIR|T31068|T31 N-methyl-D-aspartate receptor homolog
           NMDAR-L - rat, partial (1%)
          Length = 425

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
 Frame = +3

Query: 50  KIWEKRYLKSQKRWF-----RSKEISVARLPESEYYRAYSPEF--RNETLVEGKIKRIFK 102
           K WE   +  +K WF     R++ I + R     +YR+YSP      +T V   + R  K
Sbjct: 123 KTWE---MDVKKYWFGSRSQRTQNIRLGRNYTKPHYRSYSPSSCDGTKTTVWQMLWRKLK 293

Query: 103 FSKDSKSHLKRSSKSEIAY 121
            S D K      +  E  Y
Sbjct: 294 RSSDKKKVFSSHTTMEGVY 350


>TC233787 similar to UP|Q7XAV5 (Q7XAV5) Dehydration responsive element
           binding protein, partial (25%)
          Length = 505

 Score = 26.2 bits (56), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 84  SPEFRNETLVEGKIKRIFKFSKDSKSHLKRSSKSEIAYSG 123
           SPE+ N          +F FS +S+S   RSS+   +YSG
Sbjct: 344 SPEYEN--------MHLFSFSFNSRSTHSRSSRVRASYSG 249


>TC214662 
          Length = 1129

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 21/71 (29%), Positives = 33/71 (45%)
 Frame = -3

Query: 6   SVTTIPKGTKSDYDFSTIKFRNHVHQGILREILASEFQNSKQISKIWEKRYLKSQKRWFR 65
           S TTI  G  + Y+ S +         I +   A     S  I  I +K+YLKS   W +
Sbjct: 455 SATTIAGGRHAAYE-SIMNNPIQASVAIEQAEAAGSAFFSSIIYSICKKKYLKSHATW-K 282

Query: 66  SKEISVARLPE 76
           +K +S  ++P+
Sbjct: 281 TKRLSTKQIPK 249


>TC210519 weakly similar to UP|Q6NMK2 (Q6NMK2) At5g49400, partial (8%)
          Length = 517

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = -2

Query: 14  TKSDYDFSTIKFRNHVHQGILREILASEFQNSKQISKIWEKRYLKSQKRWFRSKEISVAR 73
           T + YD + I  +NH HQ   +        N K I K  +K   +++ R  + KEISV  
Sbjct: 348 TNNHYDKTLILIKNHQHQNTWK-YST*ILSNHKSIHK-RKKNRNRNRNREKKRKEISV-- 181

Query: 74  LPESEYYRAYSPEFRNETLV 93
           +P+     +++P   +  L+
Sbjct: 180 VPQKTLKTSHNPTLWHYKLI 121


>BE020344 
          Length = 354

 Score = 25.8 bits (55), Expect = 8.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 41  EFQNSKQISKIWEKRYLKSQKRWFR 65
           +++N   ++ I  KR LKSQK+W R
Sbjct: 267 QYKN*PVLNSIC*KRNLKSQKKWMR 341


  Database: GMGI
    Posted date:  Oct 22, 2004  4:58 PM
  Number of letters in database: 37,918,896
  Number of sequences in database:  63,676
  
Lambda     K      H
   0.316    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,726,080
Number of Sequences: 63676
Number of extensions: 63763
Number of successful extensions: 363
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of query: 148
length of database: 12,639,632
effective HSP length: 88
effective length of query: 60
effective length of database: 7,036,144
effective search space: 422168640
effective search space used: 422168640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)