BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.8
(85 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC205003 similar to GB|AAS20952.1|42565013|AY531115 calmodulin b... 30 0.16
TC216942 similar to UP|O01721 (O01721) Myosin-like protein (Frag... 28 1.1
TC206585 similar to UP|Q6NKN2 (Q6NKN2) At3g23540, partial (24%) 28 1.1
TC233630 weakly similar to UP|Q9FM48 (Q9FM48) Emb|CAB81845.1, pa... 27 1.4
TC224903 similar to GB|AAS75312.1|45680886|AY568529 multidomain ... 27 1.4
CA953040 homologue to PIR|B85091|B85 isoamylase-like protein [im... 27 1.8
CO978580 27 1.8
AI794821 27 2.4
TC222559 27 2.4
BI941994 27 2.4
TC232572 weakly similar to UP|HDA1_HUMAN (Q13547) Histone deacet... 26 3.1
TC226049 similar to UP|O24078 (O24078) Protein phosphatase 2C, p... 26 3.1
TC227526 similar to UP|Q6NPM8 (Q6NPM8) At4g39120, partial (76%) 26 4.0
TC211904 similar to UP|Q9FZH4 (Q9FZH4) F1O19.13 protein, partial... 26 4.0
AW234895 25 5.2
TC217351 similar to UP|Q7XJC6 (Q7XJC6) Callose synthase-like pro... 25 5.2
BE058482 25 5.2
BG839251 25 5.2
TC217350 similar to UP|Q7XJC6 (Q7XJC6) Callose synthase-like pro... 25 5.2
TC203274 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete 25 5.2
>TC205003 similar to GB|AAS20952.1|42565013|AY531115 calmodulin binding protein
25 {Arabidopsis thaliana;} , partial (24%)
Length = 1133
Score = 30.4 bits (67), Expect = 0.16
Identities = 14/30 (46%), Positives = 19/30 (62%)
Frame = +3
Query: 7 MFFYFFFCNFIGLITMGLLLRIGIGDVAWL 36
+FF+F FCNF ++T LLL GD+ L
Sbjct: 990 LFFFFSFCNFCNIVTFLLLLL*RGGDMVAL 1079
>TC216942 similar to UP|O01721 (O01721) Myosin-like protein (Fragment), partial
(12%)
Length = 1562
Score = 27.7 bits (60), Expect = 1.1
Identities = 14/27 (51%), Positives = 21/27 (76%), Gaps = 4/27 (14%)
Frame = +1
Query: 6 VMFFYFFFC--NFIGLI--TMGLLLRI 28
V+FF+F++C NFI ++ T+ LLLRI
Sbjct: 1438 VLFFFFYYC*MNFIWVLFKTLDLLLRI 1518
>TC206585 similar to UP|Q6NKN2 (Q6NKN2) At3g23540, partial (24%)
Length = 1163
Score = 27.7 bits (60), Expect = 1.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 3 LIGVMFFYFFFCNFIGLITMGLLLRIGIGD 32
L G FF+FF C + +LR+G+ +
Sbjct: 898 LFGFFFFFFFLCFLSSSFSFSFVLRMGVAN 809
>TC233630 weakly similar to UP|Q9FM48 (Q9FM48) Emb|CAB81845.1, partial (9%)
Length = 673
Score = 27.3 bits (59), Expect = 1.4
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 3 LIGVMFFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTLL 62
++ F YF F+ LL G+ + WL FV+ E G +G L+L L+
Sbjct: 429 VVSECFMYFLLHRFVCSNLHNLLFLCGVLSIIWL*FVVGY---NENCGEKGNYLYLGLLV 599
Query: 63 LD 64
+D
Sbjct: 600 ID 605
>TC224903 similar to GB|AAS75312.1|45680886|AY568529 multidomain cyclophilin
type peptidyl-prolyl cis-trans isomerase {Arabidopsis
thaliana;} , partial (13%)
Length = 817
Score = 27.3 bits (59), Expect = 1.4
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = -2
Query: 1 MILIGVMFFYF------FFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGM 54
M+L+G++ C+ GL+T+GLLL + G ++ L L + +
Sbjct: 552 MLLLGLLLMLLAGLLLKLLCDGGGLLTLGLLLNLLFG----VTLGLLLNLLFGVTLGLLL 385
Query: 55 NLHLLTLLLDLMFSMLQFGYTLFLLV 80
NL LL L+ ++ M + G TL LL+
Sbjct: 384 NLALLLGLILILLLMGRLGLTLRLLL 307
>CA953040 homologue to PIR|B85091|B85 isoamylase-like protein [imported] -
Arabidopsis thaliana, partial (19%)
Length = 421
Score = 26.9 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 29 GIGDVAWLSF--VLQLKTKEEIRGRRGMNLHLLTLLLDLMF 67
G + W+ F +LQ+ EE+ M+ HLL LLL + +
Sbjct: 218 GSPNTMWMDFDLILQVSCVEELMAPPSMHPHLLGLLLKMQY 340
>CO978580
Length = 670
Score = 26.9 bits (58), Expect = 1.8
Identities = 9/22 (40%), Positives = 16/22 (71%)
Frame = +3
Query: 1 MILIGVMFFYFFFCNFIGLITM 22
+IL + F++FF C+F+G+ M
Sbjct: 351 IILTSIHFYFFFVCDFLGVNKM 416
>AI794821
Length = 449
Score = 26.6 bits (57), Expect = 2.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 3 LIGVMFFYFFFCNFIGLITMGLLL 26
++GV FF+FFF F L+ + LLL
Sbjct: 375 ILGVPFFFFFFFFFFLLLLLLLLL 446
>TC222559
Length = 674
Score = 26.6 bits (57), Expect = 2.4
Identities = 27/88 (30%), Positives = 39/88 (43%), Gaps = 12/88 (13%)
Frame = +1
Query: 9 FYFFFCNFIGL----------ITMGLLLRIGIGDVAWLSF-VLQLKTKEEIRGRRGMNLH 57
FYF FC +I + +G LL IG+ + F V + EI G +L
Sbjct: 367 FYFLFCGYIRFYFSSSDYILAVFLGKLLSIGLFTRNSVKFLVRRFSLPSEIEGFLVRSLP 546
Query: 58 LLTLLLDLMFSMLQFGYTL-FLLVFTDF 84
++ L ++F L+F Y FLLV F
Sbjct: 547 -VSHLFSVVFFFLRFSYFFPFLLVLFCF 627
>BI941994
Length = 423
Score = 26.6 bits (57), Expect = 2.4
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 2 ILIGVMFFYFFFC 14
ILI ++FF+FFFC
Sbjct: 117 ILISLLFFFFFFC 79
>TC232572 weakly similar to UP|HDA1_HUMAN (Q13547) Histone deacetylase 1
(HD1), partial (5%)
Length = 674
Score = 26.2 bits (56), Expect = 3.1
Identities = 15/42 (35%), Positives = 25/42 (58%), Gaps = 2/42 (4%)
Frame = -3
Query: 1 MILIGVMFFYFFFCNFIGLITMGLL--LRIGIGDVAWLSFVL 40
++LI +FF+FFF F+ + + LL L + +G WL +L
Sbjct: 426 LLLIFCLFFWFFFLLFLCWLFLCLLFFLLLRLGFSHWLYLLL 301
>TC226049 similar to UP|O24078 (O24078) Protein phosphatase 2C, partial (34%)
Length = 604
Score = 26.2 bits (56), Expect = 3.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 51 RRGMNLHLLTLLLDLMFSMLQFGY 74
RR + LH L LLL L+ +L+FG+
Sbjct: 261 RRRLVLHPLLLLLHLLLLLLRFGF 332
>TC227526 similar to UP|Q6NPM8 (Q6NPM8) At4g39120, partial (76%)
Length = 1159
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/42 (30%), Positives = 22/42 (51%)
Frame = +2
Query: 37 SFVLQLKTKEEIRGRRGMNLHLLTLLLDLMFSMLQFGYTLFL 78
SFVL+ + K M++H L+L ++ L +T+FL
Sbjct: 650 SFVLEARLKFHCMAATAMHMHFCLLVLWILLLSLV*SHTIFL 775
>TC211904 similar to UP|Q9FZH4 (Q9FZH4) F1O19.13 protein, partial (66%)
Length = 650
Score = 25.8 bits (55), Expect = 4.0
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +3
Query: 8 FFYFFFCNFIGLITMGLLLRIGIGDVAWLSFVLQLKTKEEIRGRRGMNLHLLTLLLDLMF 67
FFY +F FIG + +G V ++ L K E+ ++ M + ++L +++
Sbjct: 51 FFYLYFSGFIGSQLASTVFTVGTIAVLPFYTLMVLAPKSELT-KKSMESSIPYVVLSILY 227
Query: 68 SMLQF 72
+ L +
Sbjct: 228 AYLLY 242
>AW234895
Length = 413
Score = 25.4 bits (54), Expect = 5.2
Identities = 8/15 (53%), Positives = 12/15 (79%)
Frame = -3
Query: 3 LIGVMFFYFFFCNFI 17
+IG FF FFFC+++
Sbjct: 330 VIGTFFFKFFFCHYL 286
>TC217351 similar to UP|Q7XJC6 (Q7XJC6) Callose synthase-like protein
(Fragment), partial (13%)
Length = 601
Score = 25.4 bits (54), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL + +AW FV + +T+
Sbjct: 213 IVMGLLLFTPVAFLAWFPFVSEFQTR 290
>BE058482
Length = 430
Score = 25.4 bits (54), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL + +AW FV + +T+
Sbjct: 283 IVMGLLLFTPVAFLAWFPFVSEFQTR 360
>BG839251
Length = 691
Score = 25.4 bits (54), Expect = 5.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 3 LIGVMFFYFFFCNFI 17
L G++FF+F +CN+I
Sbjct: 338 LRGLLFFFFTYCNYI 382
>TC217350 similar to UP|Q7XJC6 (Q7XJC6) Callose synthase-like protein
(Fragment), partial (31%)
Length = 1049
Score = 25.4 bits (54), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 20 ITMGLLLRIGIGDVAWLSFVLQLKTK 45
I MGLLL + +AW FV + +T+
Sbjct: 692 IVMGLLLFTPVAFLAWFPFVSEFQTR 769
>TC203274 homologue to UP|Q9SBL9 (Q9SBL9) Wrp15a, complete
Length = 1174
Score = 25.4 bits (54), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (71%)
Frame = -1
Query: 3 LIGVMFFYFFFCNFIGLI 20
L+ ++FF+FF C GL+
Sbjct: 268 LVNLLFFFFFLCWLAGLV 215
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.343 0.159 0.492
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,550,828
Number of Sequences: 63676
Number of extensions: 68858
Number of successful extensions: 1634
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of query: 85
length of database: 12,639,632
effective HSP length: 61
effective length of query: 24
effective length of database: 8,755,396
effective search space: 210129504
effective search space used: 210129504
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 52 (24.6 bits)
Lotus: description of TM0023.8