BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.7
(362 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220136 similar to UP|Q9FH92 (Q9FH92) Emb|CAB62301.1 (At5g67210... 32 0.34
TC210702 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, pa... 31 1.0
TC203592 30 1.7
CF922788 29 2.9
TC230774 similar to UP|Q945L6 (Q945L6) AT3g11590/F24K9_26, parti... 29 2.9
TC215868 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (50%) 28 5.0
CO984889 28 5.0
TC230680 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 pre... 28 5.0
TC229643 similar to GB|BAB09485.1|9758909|AB012246 NAM (no apica... 28 5.0
AW459685 similar to GP|13506749|gb| receptor-like protein kinase... 28 6.5
AW460079 28 6.5
BQ785893 similar to PIR|T10863|T108 extensin precursor - kidney ... 28 6.5
BM086490 28 6.5
BF009007 GP|23320901|gb Shaw type potassium channel Kv3.3 {Oryct... 28 8.5
TC233975 weakly similar to UP|Q9FGH8 (Q9FGH8) Similarity to sort... 28 8.5
TC228022 weakly similar to UP|Q93Z38 (Q93Z38) At1g34060/F12G12_1... 28 8.5
BG551549 28 8.5
BU762060 similar to GP|23463420|gb| sigma-54 dependent DNA-bindi... 28 8.5
>TC220136 similar to UP|Q9FH92 (Q9FH92) Emb|CAB62301.1 (At5g67210), partial
(38%)
Length = 445
Score = 32.3 bits (72), Expect = 0.34
Identities = 22/63 (34%), Positives = 27/63 (41%)
Frame = -3
Query: 236 YNTLRYSQEQYNSALLTVTSYYTRSILPGTSSQCLTSKECHPHSVSPVVAAAHPLDVRNL 295
YNT YS + T S LP T+S C KE H H SP+ +H +
Sbjct: 392 YNTAHYSHPSFP------THSAPNSHLPPTNSHC---KETHSHKPSPLPQRSHARKHES* 240
Query: 296 GSH 298
GSH
Sbjct: 239 GSH 231
>TC210702 similar to UP|Q9LJE2 (Q9LJE2) Lysyl-tRNA synthetase, partial (20%)
Length = 623
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/26 (57%), Positives = 16/26 (60%)
Frame = -1
Query: 49 VGSGGGGRRLAAMAEAAGERCFGGGG 74
+GS GGRRL A A A G GGGG
Sbjct: 263 IGSRSGGRRLRAPASATGGPGVGGGG 186
>TC203592
Length = 729
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Frame = +3
Query: 96 QVLVRVLNSNHFAPVPPRMA----------NHHEPVVDHLAVWRPSNHKQIDKQTSKQDS 145
+VL+ +N NH + VP ++ N+ VVD A S K ++ + S
Sbjct: 297 RVLINEINQNHESKVPDNLSRNVGLIRELNNNIRRVVDLYADLSSSFTKSMEVSSEGDSS 476
Query: 146 ARVNSRNKAGH 156
V S KAGH
Sbjct: 477 GAVKSDGKAGH 509
>CF922788
Length = 288
Score = 29.3 bits (64), Expect = 2.9
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +2
Query: 54 GGRRLAAMAEAAGERCFGGGGW-----EKTNQMSPISA 86
G RRLA + + GE CF GW K N+ P+SA
Sbjct: 125 GRRRLACFSISIGESCFFCRGWLMVSFPKKNEYIPVSA 238
>TC230774 similar to UP|Q945L6 (Q945L6) AT3g11590/F24K9_26, partial (43%)
Length = 1176
Score = 29.3 bits (64), Expect = 2.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 103 NSNHFAPVPPRMANHHEPVVDHL 125
N++HF +PPR+ H +P++ HL
Sbjct: 909 NADHFQQIPPRILLHCQPLLCHL 841
>TC215868 similar to UP|Q9LJ56 (Q9LJ56) Gb|AAD43149.1, partial (50%)
Length = 1472
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -3
Query: 50 GSGGGGRRLAA---MAEAAGERCFGGGGWE 76
G GGGG + A +AEAA E FG GW+
Sbjct: 168 GGGGGGVEVGAPEELAEAADEFGFGDHGWK 79
>CO984889
Length = 467
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 269 CLTSKECHPHSVSPVVAAAHPLDVRNLGSHYHLKVFYIRLIHYEVHLQNRSLICSFVPKT 328
CLTS H + H + SH HL + +H HL+N + I +P T
Sbjct: 182 CLTSTHLHHPQCTSTSLLLHQITST---SHLHL---HTSTLHLHQHLRNHTSIHLHLPHT 343
Query: 329 TT 330
TT
Sbjct: 344 TT 349
>TC230680 similar to UP|EX13_ARATH (Q9M9P0) Alpha-expansin 13 precursor
(At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22), partial (61%)
Length = 648
Score = 28.5 bits (62), Expect = 5.0
Identities = 26/97 (26%), Positives = 37/97 (37%), Gaps = 7/97 (7%)
Frame = +1
Query: 20 PSTTR----TRHGGSDLSKSWSMTAVLFQIWTSVGSGGGGRRLAAMA--EAAGERCFGGG 73
P+T+R TR + +WS A + +W S R AA A AA C G
Sbjct: 226 PTTSRRIPATRWAARAATATWSRAATAWPLWASARRCSSAARSAARASNSAASRTCAGAS 405
Query: 74 GWEKTNQMSPISATLILLTHGVQVLVRVLNSN-HFAP 109
++ P SA + V L +N F+P
Sbjct: 406 LAPPSSSPPPTSAPPTTASPPTVVFTATLPTNTSFSP 516
>TC229643 similar to GB|BAB09485.1|9758909|AB012246 NAM (no apical
meristem)-like protein {Arabidopsis thaliana;} , partial
(41%)
Length = 1434
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = -2
Query: 37 SMTAVLFQIWTSVGSGGGGRRLAAMAEAAGERCFGGGGWEKTNQMSPIS----------- 85
S++ LF++W+ GS GGR EK+N+ SPI
Sbjct: 572 SLSMCLFEVWSKRGSTRGGRE------------------EKSNRSSPIDEFILKRQGLII 447
Query: 86 ATLILLTHGVQVLVRVLNSNHFAP 109
+ +LLT V V++ + + H P
Sbjct: 446 GSALLLTTSVVVVLPLWKTLHTTP 375
>AW459685 similar to GP|13506749|gb| receptor-like protein kinase 6
{Arabidopsis thaliana}, partial (5%)
Length = 408
Score = 28.1 bits (61), Expect = 6.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +1
Query: 183 HNPPCLTISTCYAGH 197
H+PPC T +TC++G+
Sbjct: 79 HSPPCTTTTTCHSGY 123
>AW460079
Length = 271
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 203 NSTWLTVTFYYVRVSQKTIHSHKDSCL 229
NST LT T YY+ ++ + + H +C+
Sbjct: 45 NSTCLTTTIYYILLTPRILPFHSTACM 125
>BQ785893 similar to PIR|T10863|T108 extensin precursor - kidney bean,
partial (17%)
Length = 429
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -3
Query: 46 WTSVGSGGGGRRLAAMAEAAGERCFGGGGWE 76
W G GGGG E G CFGGGG E
Sbjct: 82 W**YGLGGGG-------EGGGGECFGGGGDE 11
>BM086490
Length = 428
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -2
Query: 298 HY--HLKVFYIRLIHYEVHLQNRSLICS 323
HY HL+++ I H++VHLQN+ CS
Sbjct: 259 HYEQHLQLYIILRDHHQVHLQNQEN*CS 176
>BF009007 GP|23320901|gb Shaw type potassium channel Kv3.3 {Oryctolagus
cuniculus}, partial (2%)
Length = 514
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 50 GSGGGGRRLAAMAEAAGER 68
G GGGGRRLAA+ G R
Sbjct: 79 GGGGGGRRLAAVLVVEGRR 23
>TC233975 weakly similar to UP|Q9FGH8 (Q9FGH8) Similarity to sorting nexin,
partial (15%)
Length = 634
Score = 27.7 bits (60), Expect = 8.5
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +3
Query: 78 TNQMSPISATLILLTHGVQVLVRVLNSNHFAPVPPRMANHHEPVVDHLAVWRPSNHKQID 137
T + P + TL L LV + NS ++ P PP+M NH H + + + ++
Sbjct: 45 TRSLFPYTHTLSLFLLQTS-LVMIANSLYW*PDPPKMMNHDSNNEQHQILHVSQDDEIME 221
Query: 138 KQTSKQDSARVNSRNK 153
DS+ V ++
Sbjct: 222 SLILDDDSSSVQQHHR 269
>TC228022 weakly similar to UP|Q93Z38 (Q93Z38) At1g34060/F12G12_150, partial
(54%)
Length = 1272
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/54 (29%), Positives = 24/54 (43%), Gaps = 3/54 (5%)
Frame = -3
Query: 268 QCLTSKECHPHSVSPVVAAAHPLDVRNLGSHYHLKVFYIRLI---HYEVHLQNR 318
+C + H H V P+ VR + HY FY LI HY +H+ ++
Sbjct: 241 RCTFLR*LHSHRCHEVFLCTQPIVVRCMIHHYKNNPFYAILILKWHYLLHVASK 80
>BG551549
Length = 347
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = +2
Query: 271 TSKECHP-----HSVSPVVAAAHPLDVRNLGSHYHLKVFYIRL 308
T+ CHP + + P++ AAH + R + S + L FY++L
Sbjct: 23 TTFHCHPRLHILNKMPPIILAAHTMQKRKISSSWVL--FYLKL 145
>BU762060 similar to GP|23463420|gb| sigma-54 dependent DNA-binding response
regulator {Brucella suis 1330}, partial (3%)
Length = 420
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 327 KTTTSRDPHLPPSNPSRKSFDPQHN 351
+ TTSR P+ PP NPS + PQ+N
Sbjct: 77 RLTTSRRPNPPPPNPSTAA-QPQYN 148
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.318 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,653,211
Number of Sequences: 63676
Number of extensions: 372100
Number of successful extensions: 2547
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2529
length of query: 362
length of database: 12,639,632
effective HSP length: 98
effective length of query: 264
effective length of database: 6,399,384
effective search space: 1689437376
effective search space used: 1689437376
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Lotus: description of TM0023.7