BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.3
(106 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BM891241 41 1e-04
CF922212 32 0.036
TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {A... 31 0.11
TC207080 30 0.24
CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polym... 29 0.40
TC207079 28 0.89
TC226905 similar to GB|CAE01657.1|32479994|OSJN00044 OSJNBb0043H... 25 4.4
BI970871 25 5.8
TC212152 25 5.8
BM891637 25 7.6
BI969596 24 9.9
CO980372 24 9.9
>BM891241
Length = 407
Score = 40.8 bits (94), Expect = 1e-04
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = -2
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRK 45
V+WE V K GGL +++ K NIALLGK +W ++ D++
Sbjct: 373 VKWEVVCLPKTKGGLGIKDISKFNIALLGKWIWALASDQQ 254
>CF922212
Length = 445
Score = 32.3 bits (72), Expect = 0.036
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = -2
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
V W+ V K+ GL R+ RK N ALLGK W +
Sbjct: 354 VNWDSVCLPKEKEGLGNRDLRKFNYALLGKRRWNL 250
>TC216314 similar to GB|AAP68269.1|31711826|BT008830 At1g70320 {Arabidopsis
thaliana;} , partial (18%)
Length = 759
Score = 30.8 bits (68), Expect = 0.11
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
V+W + N K GGL +++ N AL G+ +W ++ +
Sbjct: 161 VKWADICNPKIDGGLGIKDLSNFNAALRGRWIWGLASN 274
>TC207080
Length = 1023
Score = 29.6 bits (65), Expect = 0.24
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 58 KIHNSWSVKLKVTCRTLGTSLIG 80
K++ SW + K TC++LGT+ +G
Sbjct: 689 KLNQSWLITCKCTCKSLGTNKLG 621
>CA783280 weakly similar to PIR|T01871|T01 RNA-directed DNA polymerase
homolog T24M8.8 - Arabidopsis thaliana, partial (4%)
Length = 456
Score = 28.9 bits (63), Expect = 0.40
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVW 38
V W+ V K GGL +++ R N LLGK W
Sbjct: 104 VNWKTVCLPKAKGGLGIKDLRTFNTTLLGKWRW 202
>TC207079
Length = 1972
Score = 27.7 bits (60), Expect = 0.89
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 58 KIHNSWSVKLKVTCRTLGTSLIG 80
K++ SW + K TC++LGT+ G
Sbjct: 1621 KLNQSWLITCKCTCKSLGTNKQG 1553
>TC226905 similar to GB|CAE01657.1|32479994|OSJN00044 OSJNBb0043H09.11 {Oryza
sativa (japonica cultivar-group);} , partial (63%)
Length = 1401
Score = 25.4 bits (54), Expect = 4.4
Identities = 14/47 (29%), Positives = 28/47 (58%)
Frame = -1
Query: 58 KIHNSWSVKLKVTCRTLGTSLIGLESD*GMVSLACYNKEIVPLVSEM 104
+I+ + SVK+ +TL SLI L+ + + + YN+ I+ L +++
Sbjct: 1368 QINQNQSVKISQAWQTLPYSLIQLKDFFNLYNNSSYNRRIIFLKNQL 1228
>BI970871
Length = 428
Score = 25.0 bits (53), Expect = 5.8
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = +3
Query: 1 TCWHLVRW 8
TCWHL++W
Sbjct: 81 TCWHLIKW 104
>TC212152
Length = 648
Score = 25.0 bits (53), Expect = 5.8
Identities = 15/43 (34%), Positives = 23/43 (52%)
Frame = -2
Query: 21 RVRETRKGNIALLGKPVWRMSQDRKCI*AEC*RASI*KIHNSW 63
R+ + R GNI + G+ + + KC+ A *R S KI + W
Sbjct: 404 RLNKPRFGNIKIHGESLRQWHVSEKCLWAVD*RVSTAKIIH*W 276
>BM891637
Length = 427
Score = 24.6 bits (52), Expect = 7.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
+ W + D GGL +++ + N ALL K W M
Sbjct: 403 ISWRQCCASGDVGGLGIKDIKILNNALLIKWKWLM 299
>BI969596
Length = 430
Score = 24.3 bits (51), Expect = 9.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 17 CGGLRVRETRKGNIALLGKP 36
CGG + ++GNI +G+P
Sbjct: 193 CGGFFFSQKKRGNIVCVGEP 134
>CO980372
Length = 758
Score = 24.3 bits (51), Expect = 9.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = -2
Query: 2 CWHLVRWEKVTNEKD 16
CWH RW+ + +D
Sbjct: 370 CWHARRWDSIATPED 326
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.341 0.146 0.527
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,782,555
Number of Sequences: 63676
Number of extensions: 73598
Number of successful extensions: 414
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of query: 106
length of database: 12,639,632
effective HSP length: 82
effective length of query: 24
effective length of database: 7,418,200
effective search space: 178036800
effective search space used: 178036800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 51 (24.3 bits)
Lotus: description of TM0023.3