BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.12
(152 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC227593 similar to GB|BAC42746.1|26451290|AK118120 protein tran... 30 0.44
TC209578 similar to GB|AAO64898.1|29029038|BT005963 At4g37890 {A... 29 0.76
TC207092 similar to UP|Q94ET8 (Q94ET8) LCI5, partial (11%) 28 1.3
TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, part... 28 1.7
TC224411 similar to UP|Q7QFU3 (Q7QFU3) AgCP13895 (Fragment), par... 28 2.2
TC217807 similar to UP|Q6NN02 (Q6NN02) At4g14450, partial (48%) 28 2.2
TC217584 similar to UP|Q6KC90 (Q6KC90) FtsH-like protease, parti... 28 2.2
TC203442 weakly similar to UP|Q6PLP6 (Q6PLP6) Cell wall protein ... 28 2.2
BU577228 homologue to GP|4185794|gb|A cysteine desulfurase {Homo... 28 2.2
AW186095 27 2.9
TC207093 27 2.9
BU965216 similar to GP|21553536|gb receptor-like protein kinase ... 27 2.9
TC218241 similar to UP|ROL_HUMAN (P14866) Heterogeneous nuclear ... 27 3.8
TC233921 27 3.8
TC211769 weakly similar to UP|GCL2_HUMAN (Q92830) General contro... 27 3.8
TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported... 27 4.9
BQ094265 27 4.9
TC230183 homologue to UP|GLHR_ANTEL (P35409) Probable glycoprote... 27 4.9
TC209809 UP|Q6VB67 (Q6VB67) ORF_01R, partial (6%) 27 4.9
TC227273 weakly similar to UP|KGS9_YEAST (P43637) Probable serin... 27 4.9
>TC227593 similar to GB|BAC42746.1|26451290|AK118120 protein transport
protein subunit - like {Arabidopsis thaliana;} , partial
(76%)
Length = 515
Score = 30.0 bits (66), Expect = 0.44
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 15 SGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAECG 63
S AG + A EA TA GGG G RS +R + CG
Sbjct: 240 SSGAGASTDGGGACSSAEATTAHAG--GGGSGAARSHHARSRGGMGRCG 100
>TC209578 similar to GB|AAO64898.1|29029038|BT005963 At4g37890 {Arabidopsis
thaliana;} , partial (7%)
Length = 681
Score = 29.3 bits (64), Expect = 0.76
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = +3
Query: 4 TVQEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSR 52
T E +RG GAAG E AA A G+E+ + E FE S R
Sbjct: 165 TAAEKRGRERGHGAAGRERRAAYADFGLESRGEAG*DGNDEEVFE*SQR 311
>TC207092 similar to UP|Q94ET8 (Q94ET8) LCI5, partial (11%)
Length = 1015
Score = 28.5 bits (62), Expect = 1.3
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 1/41 (2%)
Frame = -3
Query: 7 EATQNKRGSGAAG-TEAEAAAAAEGMEAATARTAEAGGGEG 46
++ +RG G T +AAAAA G EA A G GEG
Sbjct: 521 KSVNGERGVDVGGATRPDAAAAAAGDEAELAAAVADGDGEG 399
>TC229926 similar to UP|Q93VB2 (Q93VB2) AT3g62770/F26K9_200, partial (46%)
Length = 829
Score = 28.1 bits (61), Expect = 1.7
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 17 AAGTEAEAAAAAEGMEAATARTAEAGGGE 45
AAG E A AEG+ A A GGGE
Sbjct: 368 AAGAEVAAEDLAEGVAVVDAEAAVGGGGE 282
>TC224411 similar to UP|Q7QFU3 (Q7QFU3) AgCP13895 (Fragment), partial (4%)
Length = 1028
Score = 27.7 bits (60), Expect = 2.2
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 58 EVAECGQYINRYKSLLPLRVFVFTAPS-KRTAV 89
+VA Q+ NR LLPL +F+F P KR +V
Sbjct: 634 KVASSHQWRNRLLRLLPLEIFIFLLPR*KRESV 732
>TC217807 similar to UP|Q6NN02 (Q6NN02) At4g14450, partial (48%)
Length = 679
Score = 27.7 bits (60), Expect = 2.2
Identities = 24/70 (34%), Positives = 33/70 (46%)
Frame = +2
Query: 22 AEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVAECGQYINRYKSLLPLRVFVFT 81
A +AA+G + A AR A AGGGEG R+ +EVA P R F+
Sbjct: 155 ARILSAADGAKTA-ARAAAAGGGEG------HRVVQEVA------------APRRTFLLR 277
Query: 82 APSKRTAVKS 91
A S +++S
Sbjct: 278 ARSHGASLRS 307
>TC217584 similar to UP|Q6KC90 (Q6KC90) FtsH-like protease, partial (13%)
Length = 612
Score = 27.7 bits (60), Expect = 2.2
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +1
Query: 6 QEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLC-REVAECGQ 64
Q T S A A AAAAA AATA A A S + ++C R VA
Sbjct: 259 QSNTVPPSSSNPASAAASAAAAAATTAAATATAAAAKAKSAPVGS*QDKICWRRVANITL 438
Query: 65 YINRYKSLLPLRVFVFT 81
Y SL L VF+
Sbjct: 439 YCQIEMSLWHLFFQVFS 489
>TC203442 weakly similar to UP|Q6PLP6 (Q6PLP6) Cell wall protein GP2
(Fragment), partial (6%)
Length = 980
Score = 27.7 bits (60), Expect = 2.2
Identities = 27/87 (31%), Positives = 32/87 (36%), Gaps = 21/87 (24%)
Frame = +2
Query: 37 RTAEAGGGEGFERSSRSRLC-------------REV--------AECGQYINRYKSLLPL 75
R EAG EGFE+ SRL RE A Q + LLPL
Sbjct: 383 RVQEAGEEEGFEQRGESRLALQGRTIRILALFHREARRLLQSRRARLAQLARPSRQLLPL 562
Query: 76 RVFVFTAPSKRTAVKSSCHLNRCKRGA 102
R + P R + CH +R R A
Sbjct: 563 RPRLRRHPRLRRRNRRRCHHSR*LRRA 643
>BU577228 homologue to GP|4185794|gb|A cysteine desulfurase {Homo sapiens},
partial (2%)
Length = 428
Score = 27.7 bits (60), Expect = 2.2
Identities = 11/26 (42%), Positives = 18/26 (68%)
Frame = +3
Query: 49 RSSRSRLCREVAECGQYINRYKSLLP 74
R SRL + ++ECG + +R+ SL+P
Sbjct: 117 RCRTSRLQKNLSECGDFSSRHGSLMP 194
>AW186095
Length = 425
Score = 27.3 bits (59), Expect = 2.9
Identities = 18/43 (41%), Positives = 21/43 (47%), Gaps = 2/43 (4%)
Frame = -1
Query: 12 KRGSGAA--GTEAEAAAAAEGMEAATARTAEAGGGEGFERSSR 52
+RG G + G A AAAEG + GGGEG ER R
Sbjct: 410 RRGPGVSERGVRVVAQAAAEGELSEELLGEHDGGGEGEERVVR 282
>TC207093
Length = 863
Score = 27.3 bits (59), Expect = 2.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -2
Query: 7 EATQNKRGSGAAGT-EAEAAAAAEGMEAATARTAEAGGGEG 46
++ +RG G +AAAAA G EA A G GEG
Sbjct: 613 KSVDGERGVNVGGAARPDAAAAAGGYEAELAAAVADGDGEG 491
>BU965216 similar to GP|21553536|gb receptor-like protein kinase {Arabidopsis
thaliana}, partial (21%)
Length = 445
Score = 27.3 bits (59), Expect = 2.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 40 EAGGGEGFERSSRSRLCREVAECGQYINRYKSLLPLRV 77
+ GGGE E S+R + + +A+ Y++ YK+ P+ V
Sbjct: 198 KVGGGEVLEWSTRVSIVKGIAKGMAYLHAYKANKPVLV 311
>TC218241 similar to UP|ROL_HUMAN (P14866) Heterogeneous nuclear
ribonucleoprotein L (hnRNP L) (P/OKcl.14), partial (4%)
Length = 1206
Score = 26.9 bits (58), Expect = 3.8
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Frame = -2
Query: 1 MATTVQEATQN--KRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEG 46
+ TT+ A+ + G+GA+G A AAAAA G A GG G
Sbjct: 251 LGTTITFASAEVFESGNGASGFTAAAAAAAGGCGAGGGGCFGGGGAGG 108
>TC233921
Length = 683
Score = 26.9 bits (58), Expect = 3.8
Identities = 16/35 (45%), Positives = 18/35 (50%)
Frame = +3
Query: 23 EAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCR 57
E AA AEG+ A AR GG G+ R R CR
Sbjct: 318 EEAAVAEGVIAKEARDKRHGG--GWHHRQRRRRCR 416
>TC211769 weakly similar to UP|GCL2_HUMAN (Q92830) General control of amino
acid synthesis protein 5-like 2 (Histone
acetyltransferase GCN5) (hsGCN5) (STAF97) , partial (4%)
Length = 631
Score = 26.9 bits (58), Expect = 3.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 7 EATQNKRGSGAAGTEAEAAA-AAEGMEAATARTAEAGGGEGFERSSR 52
E + + G+G AG E + A A AGGGEG R++R
Sbjct: 304 ELPRRRGGAGPAGGEHRGILPGGQPRRPGGAAIANAGGGEGVPRAAR 444
>TC231933 similar to PIR|F86340|F86340 protein F2D10.34 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;} , partial
(65%)
Length = 619
Score = 26.6 bits (57), Expect = 4.9
Identities = 17/35 (48%), Positives = 19/35 (53%), Gaps = 3/35 (8%)
Frame = -1
Query: 14 GSGAAGTEAEAA---AAAEGMEAATARTAEAGGGE 45
GS G EAEAA AA +G EA A + GGE
Sbjct: 208 GSSVVGGEAEAAETAAAGDGDEAEDADESAEEGGE 104
>BQ094265
Length = 422
Score = 26.6 bits (57), Expect = 4.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 13 RGSGAAGTEAEAAAAAEGMEAATAR 37
RG G G A+ AAA G+E AR
Sbjct: 322 RGGGGGGAPADEVAAAGGLEGERAR 396
>TC230183 homologue to UP|GLHR_ANTEL (P35409) Probable glycoprotein hormone
G-protein coupled receptor precursor, partial (6%)
Length = 878
Score = 26.6 bits (57), Expect = 4.9
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 5 VQEATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEGFERSSRSRLCREVA 60
V EAT R A T+A AAA EAA + EA ++ ++ R A
Sbjct: 477 VVEATAQARVVEATATKAREAAATIAREAAATKAREAAATTKAREAAATKARRAAA 310
>TC209809 UP|Q6VB67 (Q6VB67) ORF_01R, partial (6%)
Length = 1113
Score = 26.6 bits (57), Expect = 4.9
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -2
Query: 8 ATQNKRGSGAAGTEAEAAAAAEGMEAATARTAEAGGGEG 46
A + R S AAA + ATA T GGGEG
Sbjct: 503 ARSSYRASRPTRRRIPRGAAASAIPRATAGTRSCGGGEG 387
>TC227273 weakly similar to UP|KGS9_YEAST (P43637) Probable
serine/threonine-protein kinase YGL179C , partial (8%)
Length = 2373
Score = 26.6 bits (57), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = -1
Query: 39 AEAGGGEGFERSSRSRLCREVAEC 62
A AGGGEG R+ + LC ++C
Sbjct: 216 ASAGGGEGDARAKIASLCSRNSQC 145
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.316 0.129 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,212,559
Number of Sequences: 63676
Number of extensions: 82102
Number of successful extensions: 609
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of query: 152
length of database: 12,639,632
effective HSP length: 89
effective length of query: 63
effective length of database: 6,972,468
effective search space: 439265484
effective search space used: 439265484
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Lotus: description of TM0023.12