BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.1
(416 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza s... 131 6e-31
CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (ja... 57 1e-08
TC224067 38 0.010
TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and... 34 0.14
TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%) 34 0.14
TC209694 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like prot... 30 2.0
TC217040 30 2.6
TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_4... 30 2.6
TC225134 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, ... 28 7.6
AI795073 similar to PIR|T46169|T461 CDC48-like protein - Arabido... 28 7.6
TC232403 28 10.0
TC210593 weakly similar to UP|Q9LJ86 (Q9LJ86) Gb|AAD48513.1 (AT3... 28 10.0
>BU081086 weakly similar to GP|27817864|db OJ1081_B12.13 {Oryza sativa
(japonica cultivar-group)}, partial (7%)
Length = 426
Score = 131 bits (329), Expect = 6e-31
Identities = 65/123 (52%), Positives = 87/123 (69%)
Frame = +2
Query: 252 TSEFLNDVKCSGIPNHRIVLKVEVPIMLIRNLVQSAGLRNDTTLMVIALTPYIIVATALS 311
T+EF+N + S +PNH+I LKV+ IML+RNL Q+ GL N T L++ +II A +S
Sbjct: 56 TTEFINSLSTSRLPNHKIKLKVDSRIMLLRNLDQNEGLCNSTRLIITMFADHIIEAKIMS 235
Query: 312 GTKSG*SFYIPRLSLTPSDTDLPFKFSRRQFPIIMCFVMTINKSEGQSLSHVGLYLPKPV 371
G G + YIPRL+ +PS + PFK RR+FPII+ + MTINKS+GQ L+ VGLYLP PV
Sbjct: 236 GKGQGNTVYIPRLATSPSQSPWPFKLIRRKFPIIVSYAMTINKSQGQLLASVGLYLPTPV 415
Query: 372 FTH 374
F+H
Sbjct: 416 FSH 424
>CD402931 similar to GP|9081793|dbj P0489A01.23 {Oryza sativa (japonica
cultivar-group)}, partial (5%)
Length = 617
Score = 57.4 bits (137), Expect = 1e-08
Identities = 27/46 (58%), Positives = 34/46 (73%)
Frame = +2
Query: 2 SLLLPGGRTAHSRFSIPISIHEISTCNVRQGSPKAEMLQKVSLIIW 47
SLLLP G TAHS FSIP+ I + STCN+ QGS ++++L LIIW
Sbjct: 101 SLLLPRG*TAHSTFSIPLVIKDDSTCNINQGSARSKLLLHTKLIIW 238
Score = 33.1 bits (74), Expect = 0.24
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 124 NMRLQHAASSSSSMEIKELADWLLQVGDEIVKPINDDDSNIEIPSDLLVRESDNPIL 180
NMRL ++ +I+E DW+L + D +D+ I+IP +LL NP+L
Sbjct: 463 NMRLGTTNNNEDRDDIREFVDWILMIRDG--NRDEEDEGEIDIPKNLL-----NPLL 612
>TC224067
Length = 415
Score = 37.7 bits (86), Expect = 0.010
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = -2
Query: 345 IMCFVMTINKSEGQSLSHV-GLYLPKPV-FTHGQLYVALSRV 384
++C+ M INKS GQ+LS V G+ LP+P +HGQ YV L++V
Sbjct: 363 LVCYTMKINKSHGQTLSQVGGVLLPRPN**SHGQ-YVTLNQV 241
>TC212860 weakly similar to UP|PIF1_YEAST (P07271) DNA repair and
recombination protein PIF1, mitochondrial precursor,
partial (8%)
Length = 596
Score = 33.9 bits (76), Expect = 0.14
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +2
Query: 348 FVMTINKSEGQSLSHVGLYLPKPVFTHGQLYVALSRVKSRKGLKI 392
+ M+I+K +G +L V L + F G +YVALSRV+S +GL +
Sbjct: 5 WAMSIHKCQGMTLERVHTDLSR-AFGCGMVYVALSRVRSLEGLHL 136
>TC215239 UP|H3_PEA (P02300) Histone H3, partial (39%)
Length = 340
Score = 33.9 bits (76), Expect = 0.14
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -3
Query: 342 FPIIMCFVMTINKSEGQS 359
FP+I+CF MT NKSEGQ+
Sbjct: 326 FPLIVCFAMTTNKSEGQT 273
>TC209694 similar to UP|Q8LGA2 (Q8LGA2) Seed maturation-like protein, partial
(40%)
Length = 810
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +2
Query: 103 FSSAVNSTYLWKYCKVIKLTINMRLQHAASSSSSMEIK----ELADWLLQVGDEIVKPIN 158
FSS V LW + LT N+ + + S E + E+ D VGDE ++ +N
Sbjct: 401 FSSIVTGYTLWNAEYRMSLTRNLDISGSRDEGSDCETRSEVLEVKDGAKTVGDEKIEVVN 580
Query: 159 DDDS 162
D +S
Sbjct: 581 DLES 592
>TC217040
Length = 2026
Score = 29.6 bits (65), Expect = 2.6
Identities = 24/83 (28%), Positives = 38/83 (44%), Gaps = 4/83 (4%)
Frame = -2
Query: 26 TCNVRQG----SPKAEMLQKVSLIIWTIHSISTVILQPPL*TFNSFIGP*NCIPYENKSL 81
T N R+G +P L KVS TIH+I + + + PL + SF *+ ++N +
Sbjct: 780 TRNKRKGPGKDNPSFSFLTKVSAAPETIHAICSAVAEVPLVSIRSFPVE*H---FKNSNP 610
Query: 82 KFFSRFRVPIPYIPLGSIATTFS 104
F + +P P + FS
Sbjct: 609 HGFKKKELPSPSV*ASPCRNAFS 541
>TC215397 weakly similar to UP|Q8S9J6 (Q8S9J6) AT5g10770/T30N20_40, partial
(76%)
Length = 1447
Score = 29.6 bits (65), Expect = 2.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 189 EIVANLENHAYFEQRALLAHTLESVEEVNNFMLS 222
+ +A LE+H YF LL H + +N++++S
Sbjct: 1381 QAIAQLESHTYFTSSILLQHYIICFPTINHYLIS 1280
>TC225134 similar to UP|Q9M549 (Q9M549) Poly(A)-binding protein, partial
(42%)
Length = 1090
Score = 28.1 bits (61), Expect = 7.6
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Frame = -3
Query: 90 PIPYIPL--GSIATTFSSAVNS-------TYLWKYCKVIKLTINMRLQHAASSSSSME 138
P+P PL G +AT ++ + S LW++C+ + + R H ASSS+++E
Sbjct: 737 PLPPPPLLSGLLATRANAELQSGPSQEACLSLWQHCQALTVPQGGRDSHPASSSAALE 564
>AI795073 similar to PIR|T46169|T461 CDC48-like protein - Arabidopsis
thaliana, partial (10%)
Length = 474
Score = 28.1 bits (61), Expect = 7.6
Identities = 16/35 (45%), Positives = 19/35 (53%), Gaps = 2/35 (5%)
Frame = -3
Query: 69 GP*NC--IPYENKSLKFFSRFRVPIPYIPLGSIAT 101
GP C +P+ SL FFS+ R PIP P I T
Sbjct: 169 GPHQCHLLPWLQDSLFFFSQTRYPIPXHPSPHICT 65
>TC232403
Length = 1252
Score = 27.7 bits (60), Expect = 10.0
Identities = 10/24 (41%), Positives = 18/24 (74%)
Frame = +3
Query: 279 LIRNLVQSAGLRNDTTLMVIALTP 302
+++ VQ+ GLR+DTT +V+ + P
Sbjct: 168 IVKEAVQAKGLRDDTTCIVVDILP 239
>TC210593 weakly similar to UP|Q9LJ86 (Q9LJ86) Gb|AAD48513.1
(AT3g22600/F16J14_17), partial (56%)
Length = 728
Score = 27.7 bits (60), Expect = 10.0
Identities = 22/64 (34%), Positives = 32/64 (49%), Gaps = 3/64 (4%)
Frame = +2
Query: 307 ATALSGTKSG*SFYIPRLSLTPSDTDLPFKFSRRQFPIIMCFVMTINKSEGQSL---SHV 363
+TA G+ SG S P+ S+TPS +D P + P I S+G ++ SH+
Sbjct: 446 STAPVGSPSGSSAESPQGSITPSASDFPSGAGSKTVPSI-----DGGSSDGNAIKVPSHL 610
Query: 364 GLYL 367
LYL
Sbjct: 611 VLYL 622
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,486,623
Number of Sequences: 63676
Number of extensions: 251681
Number of successful extensions: 1396
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of query: 416
length of database: 12,639,632
effective HSP length: 100
effective length of query: 316
effective length of database: 6,272,032
effective search space: 1981962112
effective search space used: 1981962112
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0023.1