BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0021.5
(210 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell... 36 0.015
TC217631 similar to UP|WAIP_HUMAN (O43516) Wiskott-Aldrich syndr... 35 0.025
TC217554 similar to GB|AAO44074.1|28466931|BT004808 At5g11090 {A... 35 0.032
TC203677 similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (14%) 34 0.055
TC206298 similar to GB|AAC19270.1|3193286|T14P8 coded for by A. ... 29 0.064
TC206478 weakly similar to UP|Q8VYI7 (Q8VYI7) At1g80610/T21F11_6... 33 0.12
TC206433 33 0.12
AI735802 33 0.12
TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protei... 33 0.12
TC215724 similar to UP|Q9LUA6 (Q9LUA6) Dihydrolipoamide S-acetyl... 33 0.12
TC234808 similar to GB|AAS68107.1|45592906|BT011783 At2g27390 {A... 33 0.12
TC227732 similar to UP|Q6P623 (Q6P623) Fibrillarin, partial (16%) 33 0.12
TC226922 similar to UP|Q9LPQ3 (Q9LPQ3) F15H18.14, partial (54%) 32 0.16
NP005041 sti (stress inducible protein) 32 0.21
TC226124 similar to UP|Q9ZWQ8 (Q9ZWQ8) Homolog to plastid-lipid-... 32 0.21
TC216079 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, p... 32 0.27
TC224779 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (79%) 32 0.27
TC218963 32 0.27
TC228149 similar to UP|O02402 (O02402) Insoluble protein, partia... 28 0.29
TC227620 homologue to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich gly... 31 0.36
>TC220421 weakly similar to UP|GP1_CHLRE (Q9FPQ6) Vegetative cell wall
protein gp1 precursor (Hydroxyproline-rich glycoprotein
1), partial (13%)
Length = 1409
Score = 35.8 bits (81), Expect = 0.015
Identities = 36/111 (32%), Positives = 44/111 (39%), Gaps = 9/111 (8%)
Frame = +1
Query: 46 PPPPRTLLLPFPL-------FQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWR 98
PPP + LLLP PL P PLPP L PPR P P+ P +
Sbjct: 301 PPPRQLLLLPLPLLHRPQVPLHPPLPLPPQLPRHPHPPPRRP------RPL---PHLLHL 453
Query: 99 NQHHHCTPLTVRNKT--PQEIFRFAALRRRASALQLAISPSFGLRWPRNHH 147
Q P T+R P E R LRR+ +L+ P + P HH
Sbjct: 454 RQQ---PPQTLRRLALQPPEPHRPHRLRRQRQSLRPLRHPRPHDQAPNPHH 597
>TC217631 similar to UP|WAIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein
interacting protein (WASP interacting protein) (PRPL-2
protein), partial (7%)
Length = 1440
Score = 35.0 bits (79), Expect = 0.025
Identities = 35/111 (31%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Frame = +3
Query: 47 PPPRTLLLPFP------LFQPRAPLPPCLLH--EAMKPPRNPSRRYLQSPISGEPLTIWR 98
P P L LP P F PRA LPP L + + PPR P +R P+ PL
Sbjct: 111 PNPSPLPLPLPHHRPLSSFPPRALLPPPYLRCSQPLPPPRPPPKR----PLPPRPL---- 266
Query: 99 NQHHHCTPLTVRN--KTPQEIFRFAALRRRASALQLAISPSFGLRWPRNHH 147
+ HH P + P A R R L + G +PR HH
Sbjct: 267 HTRHHLLPQRPQP*LVQPSPERNHLARRLRLRTLARRHGEARGRPYPR*HH 419
>TC217554 similar to GB|AAO44074.1|28466931|BT004808 At5g11090 {Arabidopsis
thaliana;} , partial (63%)
Length = 1074
Score = 34.7 bits (78), Expect = 0.032
Identities = 22/63 (34%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
Frame = +2
Query: 127 ASALQLAISPSFGLRWPRNHHHHALHGERNKTLYSFSSPATLPPLAAVLRHLLQP--ISP 184
AS+ S S PR HH H+ H + T + SPA PL++ +R + P ISP
Sbjct: 218 ASSTSSGFSSSSFFNQPRQHHAHSHHRAASPTRVNLCSPA---PLSSAVRFSIDPRSISP 388
Query: 185 EKS 187
+S
Sbjct: 389 NRS 397
>TC203677 similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (14%)
Length = 1446
Score = 33.9 bits (76), Expect = 0.055
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Frame = +2
Query: 3 SFFTFLFMCLILEIVQTMKNKISTAVVLTRCYRDDTRKA-----ATRKPPPPRTLLLPFP 57
S T L CL ++V S + + R +A AT P R+LL P P
Sbjct: 482 SSLTLLMKCLRSDLVPNSARGTSASSHVAAELRYQAEEALWF*GATSSQQPWRSLLHPQP 661
Query: 58 L-FQPRAPLPPCLLHEAMK---PPRNP 80
L F P AP+ P L A+ PP NP
Sbjct: 662 LSFDPSAPITPSLPLSALSPLPPPENP 742
Score = 28.1 bits (61), Expect = 3.0
Identities = 19/60 (31%), Positives = 24/60 (39%), Gaps = 1/60 (1%)
Frame = +2
Query: 35 RDDTRKAATRKPPPPRTLLLPFPLFQPRA-PLPPCLLHEAMKPPRNPSRRYLQSPISGEP 93
R A + +PP P P P + PLPP PP +PSR L + EP
Sbjct: 986 RSSACSACSTEPPASPPPSSPPPPSPPSSLPLPPLCSFPTTLPPSSPSRLLLLPRSASEP 1165
>TC206298 similar to GB|AAC19270.1|3193286|T14P8 coded for by A. thaliana
cDNA H76583 {Arabidopsis thaliana;} , partial (57%)
Length = 1267
Score = 29.3 bits (64), Expect(2) = 0.064
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 135 SPSFGLRWPRNHHHHALHGERNKTL 159
SP LR P +HHHH H N L
Sbjct: 398 SPMILLRTPLHHHHHHHHNNNNNNL 472
Score = 23.1 bits (48), Expect(2) = 0.064
Identities = 19/56 (33%), Positives = 22/56 (38%)
Frame = +3
Query: 47 PPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHH 102
PP R L P P P P LL PPR P R+L+ P +HH
Sbjct: 252 PPLRRRLRP-----PSLP-PQTLLLLPRPPPRRPPVRHLRFRPRTRPRPRQLQRHH 401
>TC206478 weakly similar to UP|Q8VYI7 (Q8VYI7) At1g80610/T21F11_6, partial
(30%)
Length = 1361
Score = 32.7 bits (73), Expect = 0.12
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Frame = +3
Query: 95 TIWRNQHHHCTPLTVRNKTPQEIFRF-AALRRRASALQLAISPSFGLRWP---------- 143
T+ HH P + K P+ R AA+ R +A+ SP+ L W
Sbjct: 285 TVSHKSHHQLIPFSWGVKQPRSRSRLSAAVSRCDAAVSTRCSPTTPLSWSAGTDSYEDSS 464
Query: 144 RNHHHHALHGERNKTL-YSFSSPAT 167
R+HHHHA + T Y+ +S +T
Sbjct: 465 RHHHHHAAISKATATSGYTGNSAST 539
>TC206433
Length = 1287
Score = 32.7 bits (73), Expect = 0.12
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +3
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPP 67
+++ R PPPR+L +P P+ P P PP
Sbjct: 24 QRSVRRSTPPPRSLSIPSPIVLPLTPSPP 110
>AI735802
Length = 445
Score = 32.7 bits (73), Expect = 0.12
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -2
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPP 77
PP P +L PL QP+ PPC+LH PP
Sbjct: 138 PPKPSSLPPL*PLKQPQPSPPPCVLHPQPNPP 43
>TC221182 weakly similar to UP|ENAH_MOUSE (Q03173) Enabled protein homolog
(NPC derived proline-rich protein 1) (NDPP-1), partial
(5%)
Length = 446
Score = 32.7 bits (73), Expect = 0.12
Identities = 27/74 (36%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Frame = +3
Query: 43 TRKPPPPRTLLLPFPL---FQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRN 99
T P PP LLLP PL P PLPP A PP P Q + P T RN
Sbjct: 60 TTGPTPPVPLLLPPPLPLPHHPPPPLPPLPPKPATPPPTPPPPAAAQ---AAAPKTTTRN 230
Query: 100 ----------QHHH 103
HHH
Sbjct: 231 GDVVDSTKVRAHHH 272
>TC215724 similar to UP|Q9LUA6 (Q9LUA6) Dihydrolipoamide S-acetyltransferase,
partial (86%)
Length = 1878
Score = 32.7 bits (73), Expect = 0.12
Identities = 16/37 (43%), Positives = 20/37 (53%)
Frame = +3
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMK 75
+K+ KP PP PFPL P PLPP LL ++
Sbjct: 438 KKSPKPKPKPPN----PFPLALPPPPLPPTLLRRLLR 536
>TC234808 similar to GB|AAS68107.1|45592906|BT011783 At2g27390 {Arabidopsis
thaliana;} , partial (14%)
Length = 411
Score = 32.7 bits (73), Expect = 0.12
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 38 TRKAATRKPPPPRTLLLPFPL-FQPRAPLPPCLLHEAMKPPRNPSR 82
+RK++T+KP PP PFP + + PL P LL + R P+R
Sbjct: 109 SRKSSTKKPEPPPPPPPPFPAPKRSKTPLSPPLLRPRRRCRRQPNR 246
>TC227732 similar to UP|Q6P623 (Q6P623) Fibrillarin, partial (16%)
Length = 1693
Score = 32.7 bits (73), Expect = 0.12
Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 5/54 (9%)
Frame = -1
Query: 46 PPPPRTLLLPFPLFQPRAPLP--PCLLHEAMKPPRNPSRRY---LQSPISGEPL 94
PP P LP P PR+P P P KPPR+P R L+ P+S PL
Sbjct: 835 PPKPSLSDLPLPPKPPRSPRPPNPPCSPRPPKPPRSPLPRKPLPLKPPLSEPPL 674
Score = 26.6 bits (57), Expect = 8.8
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -1
Query: 44 RKPPPPRTLLLPFPLFQPRAPLP--PCLLHEAMKPPRNPSRRYLQSP 88
R P PP P P PR+PLP P L + P P LQ P
Sbjct: 787 RSPRPPNPPCSPRPPKPPRSPLPRKPLPLKPPLSEPPLPR*PPLQFP 647
>TC226922 similar to UP|Q9LPQ3 (Q9LPQ3) F15H18.14, partial (54%)
Length = 1190
Score = 32.3 bits (72), Expect = 0.16
Identities = 30/108 (27%), Positives = 44/108 (39%), Gaps = 6/108 (5%)
Frame = +2
Query: 40 KAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRN------PSRRYLQSPISGEP 93
K+ATR PPPP P P PP + KPP + P+ +P P
Sbjct: 266 KSATRPPPPPTRSRSSTP-----TPTPPGAAAPSRKPPSSAALPTAPTLSASTAPSKSPP 430
Query: 94 LTIWRNQHHHCTPLTVRNKTPQEIFRFAALRRRASALQLAISPSFGLR 141
+T WR+ T R +P AA R++ + + ++ S G R
Sbjct: 431 VT-WRSSWSTWTAAPSRPPSPP-----AARSRKSDSPRWRVTSSRGSR 556
>NP005041 sti (stress inducible protein)
Length = 1710
Score = 32.0 bits (71), Expect = 0.21
Identities = 31/111 (27%), Positives = 44/111 (38%), Gaps = 7/111 (6%)
Frame = +3
Query: 39 RKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWR 98
R++ R PPPPR F ++ L P ++P R P RR SP +PL
Sbjct: 225 RRSPPRPPPPPRR----FSAYKTGLQLEPRQCRPQIRPCRCPGRRLPPSP--HQPLRHRL 386
Query: 99 NQHHHCTPLTV------RNKTPQEIFRFAALRRR-ASALQLAISPSFGLRW 142
+ H PLT ++TP RR S+ + +S S W
Sbjct: 387 LRPRHVGPLTADPTARPTSRTPSSSRSCRTSRRTPTSSTCI*VSESHACHW 539
>TC226124 similar to UP|Q9ZWQ8 (Q9ZWQ8) Homolog to plastid-lipid-associated
protein, partial (74%)
Length = 1242
Score = 32.0 bits (71), Expect = 0.21
Identities = 25/81 (30%), Positives = 31/81 (37%), Gaps = 2/81 (2%)
Frame = -1
Query: 47 PPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIWRNQHHHCTP 106
PP + PFP P PP LL PP R SP+ H P
Sbjct: 399 PPKPSSASPFPFPSPSVSPPPPLLRRMPPPPSPGPTRRRSSPLG------------HAPP 256
Query: 107 LTVRNKTPQEIFR--FAALRR 125
+ RN+ P FR ++ LRR
Sbjct: 255 AS-RNRRPSSAFRQIWSKLRR 196
>TC216079 weakly similar to UP|Q9ZVA8 (Q9ZVA8) F9K20.6 protein, partial (19%)
Length = 538
Score = 31.6 bits (70), Expect = 0.27
Identities = 21/44 (47%), Positives = 23/44 (51%)
Frame = +2
Query: 35 RDDTRKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPR 78
R + +A R PPPP LLP PL PR L LLH K PR
Sbjct: 368 RRPSPQAHLRGPPPPPPRLLPPPLHPPRLALRQ-LLHR*DKWPR 496
>TC224779 homologue to UP|Q39882 (Q39882) Nodulin-26, partial (79%)
Length = 897
Score = 31.6 bits (70), Expect = 0.27
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +1
Query: 38 TRKAATRKPPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTIW 97
T T P PP + LP P+ P + LPP H P+ E T+W
Sbjct: 238 TSSPTTAPPLPPASSPLPSPMLSPSSSLPPLFQHSGF-------------PLESELATLW 378
>TC218963
Length = 1084
Score = 31.6 bits (70), Expect = 0.27
Identities = 55/202 (27%), Positives = 73/202 (35%), Gaps = 28/202 (13%)
Frame = -1
Query: 4 FFTFLFMCLILEIVQTMKNKISTAVVLTRCYRDDTRKAA------TRKPPPPRTLLLPFP 57
FF+F F CL LEI +T + + +AVV+ CY + K ++ P R + P
Sbjct: 982 FFSFCF*CLWLEIQKT--SFLRSAVVVACCYIEIEGKTKRVLEWFRQQDP*TRDVRCP-- 815
Query: 58 LFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPL-TIWRNQHHHCTP----LTVRNK 112
P PP +L P PS SP + P TI + TP +VR
Sbjct: 814 --TRHLPSPPAILPTHASHPPCPSSTLRISP*TSPPTPTIPPSLGSSETPTRSAASVRRT 641
Query: 113 TPQEIFRFAAL------RRRASALQLAISPSFGL------RWPRNHHHHALHGERNKTLY 160
TP A R S A PS L P H L + K
Sbjct: 640 TPPSTAAIAGSGSGSPEECRKSTASAASKPSRYLSPLNIAASPVTEKCHCLPASKCKLAE 461
Query: 161 SFS-----SPATLPPLAAVLRH 177
S + +P TLPP + H
Sbjct: 460 SPTRKRNHNPRTLPPRCCTMLH 395
>TC228149 similar to UP|O02402 (O02402) Insoluble protein, partial (4%)
Length = 1008
Score = 27.7 bits (60), Expect(2) = 0.29
Identities = 18/41 (43%), Positives = 20/41 (47%)
Frame = +1
Query: 46 PPPPRTLLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQ 86
PPPP LLL P P PLPP L PP + S L+
Sbjct: 487 PPPPLLLLLLPPPPPPPPPLPPPL------PPFDASAEVLR 591
Score = 26.9 bits (58), Expect = 6.7
Identities = 20/52 (38%), Positives = 21/52 (39%), Gaps = 16/52 (30%)
Frame = +1
Query: 45 KPPPPRTLLL---------PFPLF-------QPRAPLPPCLLHEAMKPPRNP 80
+P PP TLL PFPLF P P PP LL PP P
Sbjct: 382 EPEPPPTLLCLDALSFPLSPFPLFTIFFCSLAPLPPPPPLLLLLLPPPPPPP 537
Score = 22.3 bits (46), Expect(2) = 0.29
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 104 CTPLTVRNKTPQEIFRFAALRR 125
CTPL V +FRF +LRR
Sbjct: 618 CTPLLVCPPLCFALFRFNSLRR 683
>TC227620 homologue to UP|Q9SBM1 (Q9SBM1) Hydroxyproline-rich glycoprotein
DZ-HRGP precursor, partial (5%)
Length = 514
Score = 31.2 bits (69), Expect = 0.36
Identities = 21/57 (36%), Positives = 24/57 (41%), Gaps = 2/57 (3%)
Frame = +2
Query: 52 LLLPFPLFQPRAPLPPCLLHEAMKPPRNPSRRYLQSPISGEPLTI--WRNQHHHCTP 106
L + P P PLPPC LH S + GEP I +R Q H CTP
Sbjct: 113 LQIHLPTLSPPPPLPPCPLH-------FKSCAIHYQSLHGEPQHIRQFRQQGHWCTP 262
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.326 0.139 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,472,271
Number of Sequences: 63676
Number of extensions: 273640
Number of successful extensions: 4910
Number of sequences better than 10.0: 244
Number of HSP's better than 10.0 without gapping: 4007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4722
length of query: 210
length of database: 12,639,632
effective HSP length: 93
effective length of query: 117
effective length of database: 6,717,764
effective search space: 785978388
effective search space used: 785978388
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Lotus: description of TM0021.5