BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0019b.10
(251 letters)
Database: GMGI
63,676 sequences; 37,918,896 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC233093 weakly similar to UP|Q9ZQE5 (Q9ZQE5) Expressed protein ... 36 0.015
AI736791 34 0.055
TC215353 similar to UP|Q9FYW7 (Q9FYW7) BAC19.9, partial (29%) 33 0.16
TC207745 32 0.27
TC229103 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA... 31 0.47
TC217534 similar to GB|AAB62826.1|2252827|IG005I10 coded for by ... 31 0.47
TC228913 weakly similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partia... 31 0.47
BM892538 similar to GP|9759296|dbj| gamma-tubulin interacting pr... 31 0.61
TC213986 similar to UP|O23215 (O23215) Transcription initiation ... 31 0.61
BU964403 homologue to GP|18086441|gb| At2g39870/T5I7.17 {Arabido... 31 0.61
TC216484 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabin... 30 0.80
TC213518 weakly similar to UP|Q9FL53 (Q9FL53) Gb|AAD39647.1, par... 30 0.80
TC228448 weakly similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (4%) 30 1.0
TC221448 similar to UP|O15187 (O15187) T-cluster binding protein... 30 1.0
AI443215 similar to GP|17933299|gb| AT4g17800/dl4935c {Arabidops... 30 1.0
TC229102 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA... 30 1.4
TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, par... 30 1.4
TC220528 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/... 30 1.4
TC207392 similar to UP|BNK_DROME (P40794) Bottleneck protein, pa... 30 1.4
BI784652 29 1.8
>TC233093 weakly similar to UP|Q9ZQE5 (Q9ZQE5) Expressed protein
(At2g15690/F9O13.24), partial (16%)
Length = 712
Score = 36.2 bits (82), Expect = 0.015
Identities = 38/106 (35%), Positives = 48/106 (44%), Gaps = 9/106 (8%)
Frame = +3
Query: 153 TTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHV 212
T +AT+ TS T+ F T P Q +SP ++ ++ P TSS QC
Sbjct: 6 TMAATTSTST----TSTFQPTDPSP--PQPSSPFQSISSSP*PSTSSTQCSSSISRTWRK 167
Query: 213 A--SVEPVTPAVKKS--SNTNSSK-KSSQRGRPKGSKNK----PQP 249
SVEP TP KS SNT+ SK K S PK + PQP
Sbjct: 168 P**SVEPSTPTTSKSQFSNTHFSKSKLSPTHYPKSMEQSKPCCPQP 305
>AI736791
Length = 389
Score = 34.3 bits (77), Expect = 0.055
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = +1
Query: 175 PHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKS 234
PH+ + Q SPS + P Q P G + P+ + NTNSS +
Sbjct: 121 PHKSLSQNPSPSTDFNHHHHPHHHHHQ-HPFNPIGGPXSQAPRANPSPNQKPNTNSSSST 297
Query: 235 SQRGRPKGSKNKP 247
++ P +KP
Sbjct: 298 ARTSNPSNPNSKP 336
>TC215353 similar to UP|Q9FYW7 (Q9FYW7) BAC19.9, partial (29%)
Length = 688
Score = 32.7 bits (73), Expect = 0.16
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +3
Query: 179 IRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRG 238
+R RASP A+ R SSP TS L+ S ++ P++P S +KK S
Sbjct: 228 LRPRASP-ASGRTGSSPATSPASS--LSSSSASASTPSPISP-----SKPGPTKKPSSAS 383
Query: 239 RPKGSKNKPQP 249
R K PQP
Sbjct: 384 RSKTPSPPPQP 416
>TC207745
Length = 648
Score = 32.0 bits (71), Expect = 0.27
Identities = 27/116 (23%), Positives = 49/116 (41%), Gaps = 21/116 (18%)
Frame = +3
Query: 8 YWKVSRFVASQRRTGCWLLLAW-----CYRRGKIQTLKAINSGEEQKEQLQVLIDS---- 58
YW +FV ++R GCW L + C ++ LK ++SG Q E + L+ +
Sbjct: 75 YWS*DKFVENERC*GCWCLSSTD**KSCESFAQVVFLKHLDSGSFQHEHVVYLLLTIFCI 254
Query: 59 ----------GYTSEEIEGWKNNLI--VEGILFNENQIFDNYVQNQGTRYAVTGYS 102
+T +++E + L V+ I+ + +Q+ T+ GYS
Sbjct: 255 VVNRRNKKVYAWTVDDVESMQKVLFEHVDAIVTSNPTFLQRLMQDIKTQCLEEGYS 422
>TC229103 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (28%)
Length = 456
Score = 31.2 bits (69), Expect = 0.47
Identities = 14/38 (36%), Positives = 23/38 (59%), Gaps = 6/38 (15%)
Frame = +2
Query: 218 VTPAVKKSSNTNSSKKSS------QRGRPKGSKNKPQP 249
+TP+ + +N++ ++ RGRP GSKNKP+P
Sbjct: 146 ITPSTAQKANSSGGDGATIEVVRRPRGRPPGSKNKPKP 259
>TC217534 similar to GB|AAB62826.1|2252827|IG005I10 coded for by A. thaliana
cDNA N96903 {Arabidopsis thaliana;} , partial (98%)
Length = 1147
Score = 31.2 bits (69), Expect = 0.47
Identities = 28/95 (29%), Positives = 46/95 (47%), Gaps = 7/95 (7%)
Frame = +3
Query: 152 ATTSATSPTSELR-----EITNVFVRTSPHQIIRQRASPSATVRNASSP--ETSSQQCFP 204
A+TS+++ T+ LR T+ T+P PSA R+ +SP SS FP
Sbjct: 243 ASTSSSAATALLRLPPAPPATSTSATTAPLSTPSSSPLPSAA-RSPASPTASASSPASFP 419
Query: 205 LTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGR 239
+ P A+ P TP +SS+ ++ S++R +
Sbjct: 420 PSL-PSPSAATAPPTPPESRSSSRGATSSSARRAQ 521
>TC228913 weakly similar to UP|Q8IP68 (Q8IP68) CG31813-PA, partial (19%)
Length = 692
Score = 31.2 bits (69), Expect = 0.47
Identities = 25/89 (28%), Positives = 38/89 (42%)
Frame = +2
Query: 152 ATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGH 211
+TTSA SP S V T+P SP +T ++P +++ P + +P
Sbjct: 359 STTSAASPASASSVANTASVTTAP--------SPPSTPSTTTTPPPTARST-PSSSNPTL 511
Query: 212 VASVEPVTPAVKKSSNTNSSKKSSQRGRP 240
S + SS T SS +S+ RP
Sbjct: 512 STSPTATPKRTRVSSPTPSSSSTSRSSRP 598
>BM892538 similar to GP|9759296|dbj| gamma-tubulin interacting protein-like
{Arabidopsis thaliana}, partial (8%)
Length = 421
Score = 30.8 bits (68), Expect = 0.61
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +2
Query: 209 PGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQPHP 251
P + P +P K+S TNS +S + PK + PQP P
Sbjct: 17 PSPSPTSSPNSPPKPKASTTNSPSSTSSKSSPKIATPPPQPPP 145
>TC213986 similar to UP|O23215 (O23215) Transcription initiation factor like
protein (TFIIB-related protein) (At4g37010)
(TFIIB5/pBrp), partial (22%)
Length = 414
Score = 30.8 bits (68), Expect = 0.61
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 174 SPHQI-IRQRASPSATVRNASSPETSSQQCFPLTCSPGHVASVEP-VTPAVKKSSNTNSS 231
S H+I + R+ + T R SSP SS P SP H S P +PA SSN S+
Sbjct: 189 SSHRISLSPRSIKTTTRRTLSSPRASSPPSPPGPSSPTHSTSSHPSPSPATSPSSNALSN 368
>BU964403 homologue to GP|18086441|gb| At2g39870/T5I7.17 {Arabidopsis
thaliana}, partial (3%)
Length = 379
Score = 30.8 bits (68), Expect = 0.61
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +3
Query: 139 PFLTSQQNRLSGFATTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSP 195
P++T SGF +S TS T R P+++I R PSA R SSP
Sbjct: 36 PWMTLSWTPRSGFRLSSPTSLT-----------RLGPNRLIPVRPGPSAATRKTSSP 173
>TC216484 similar to UP|FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan
protein 1 precursor, partial (58%)
Length = 1213
Score = 30.4 bits (67), Expect = 0.80
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +1
Query: 156 ATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQCFPLTCSPGHV--A 213
++SP S R + +++P SPS T S+ + S P T P
Sbjct: 85 SSSPPSPTRTTSPASSQSTPSSPPSTTTSPSPTSPPKSTAKPPSPSA-PSTTPPCRTFSR 261
Query: 214 SVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQP 249
S P TP+ S +T+SS S+ R + P P
Sbjct: 262 STPPSTPSRTSSPSTSSSTTSAPRSSTRSPTAPPSP 369
>TC213518 weakly similar to UP|Q9FL53 (Q9FL53) Gb|AAD39647.1, partial (22%)
Length = 571
Score = 30.4 bits (67), Expect = 0.80
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Frame = +2
Query: 142 TSQQNRLSGFATTS-ATSPTSELREIT---NVFVRTSPHQIIRQRASPSATVRNASSPET 197
T ++ + TTS +T PT ++ + +F T PH R++ PS SP
Sbjct: 5 TRTHPKIHPYPTTSHSTPPTLSAKQAS**WQIFSTTLPHSSNRRKTQPS-------SPSK 163
Query: 198 SSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRP 240
+ P T S S P +T SSK +R P
Sbjct: 164 TPPSKTPPTLSGSSKPSSSTTPPPPTPIPSTTSSKFPKERASP 292
>TC228448 weakly similar to UP|Q6VBJ4 (Q6VBJ4) Epa5p, partial (4%)
Length = 458
Score = 30.0 bits (66), Expect = 1.0
Identities = 22/71 (30%), Positives = 28/71 (38%), Gaps = 2/71 (2%)
Frame = +1
Query: 183 ASPSATVRNASSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSS--NTNSSKKSSQRGRP 240
ASPS N TS P + P S P P ++ S T S+ +S P
Sbjct: 154 ASPSGPTPNPPFSPTSKPSPAPRSSPPSRSNSPPPHVPPLRLLSKPTTASTSRSPSPLSP 333
Query: 241 KGSKNKPQPHP 251
SK P+P P
Sbjct: 334 TSSKPTPRPSP 366
>TC221448 similar to UP|O15187 (O15187) T-cluster binding protein, partial
(8%)
Length = 606
Score = 30.0 bits (66), Expect = 1.0
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +2
Query: 172 RTSPHQIIRQRASPSATV--RNASSPETSSQQCFPL-TCSPGHVASVEPVTPA-VKKSSN 227
+TS R S S+T R+ S+ TSS C PL T P +S V+PA ++ +
Sbjct: 185 KTSARSYNRSPRSTSSTSSNRHRSATPTSSMPCAPLRTSIPPSGSSSCAVSPARPRRRPS 364
Query: 228 TNSSKKSSQRGRPKGSKNKPQPHP 251
S++S+ RP S +P+ P
Sbjct: 365 AACSRRSANWTRPS*SLTRPRGGP 436
>AI443215 similar to GP|17933299|gb| AT4g17800/dl4935c {Arabidopsis
thaliana}, partial (26%)
Length = 392
Score = 30.0 bits (66), Expect = 1.0
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +1
Query: 219 TPAVKKSSNTNSSKKSSQRGRPKGSKNKPQP 249
+P ++ +S RGRP GSKNKP+P
Sbjct: 196 SPGLELTSGPGDIVGRRPRGRPPGSKNKPKP 288
>TC229102 similar to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (63%)
Length = 1141
Score = 29.6 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 6/37 (16%)
Frame = +1
Query: 219 TPAVKKSSNTNSSKKSS------QRGRPKGSKNKPQP 249
TP+ + +N++ ++ RGRP GSKNKP+P
Sbjct: 292 TPSTVQKANSSGGDGATIEVVRRPRGRPPGSKNKPKP 402
>TC222379 homologue to UP|Q9HGV7 (Q9HGV7) Gbeta like protein, partial (84%)
Length = 950
Score = 29.6 bits (65), Expect = 1.4
Identities = 28/97 (28%), Positives = 40/97 (40%), Gaps = 14/97 (14%)
Frame = +2
Query: 153 TTSATSPTSELREITNVFVRTSPHQIIRQRASPSATVRNASSPETSSQQC---------- 202
+ S +SP + +++ TS ASP TVR++ P T+ C
Sbjct: 107 SASGSSPPARPPAVSSATTTTS-----FPSASPPTTVRSSPVPVTAPSSCGTPSVTASTP 271
Query: 203 FPLTCSP-GHVASVEPVTPAVKKSS---NTNSSKKSS 235
P +P G AS P TP SS T+SS+ S
Sbjct: 272 SPTRATPSGSPASASPPTPRTPSSSPLAGTSSSRSGS 382
>TC220528 homologue to GB|AAM19932.1|20453387|AY097416 AT4g17800/dl4935c
{Arabidopsis thaliana;} , partial (63%)
Length = 1278
Score = 29.6 bits (65), Expect = 1.4
Identities = 26/85 (30%), Positives = 31/85 (35%), Gaps = 19/85 (22%)
Frame = +1
Query: 184 SPSATVRNASSPETSSQQCFPLTCSPGHVASVE----PVTPAVKKSSNTNSSKKSS---- 235
S S V+N P+ QQ + P H E P P + N KS
Sbjct: 328 SASRFVQNLHLPDLHLQQNYQ---QPRHKRDSEEQETPPNPGTALAPFDNDDDKSQGLEL 498
Query: 236 -----------QRGRPKGSKNKPQP 249
RGRP GSKNKP+P
Sbjct: 499 ASGPGDIVGRRPRGRPSGSKNKPKP 573
>TC207392 similar to UP|BNK_DROME (P40794) Bottleneck protein, partial (7%)
Length = 1544
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +2
Query: 219 TPAVKKSSNTNSSKKSSQRGRP 240
T + KKS+NTN+ KK Q+G+P
Sbjct: 575 TESDKKSNNTNNKKKKEQQGQP 640
>BI784652
Length = 421
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 193 SSPETSSQQCFPLTCSPGHVASVEPVTPAVKKSSNTNSSKKSSQRGRPKGSKNKPQP 249
SSP +S C P +C P V + P + SS SS P+ S +P+P
Sbjct: 177 SSPTSSCTTC-PRSCGPSSV*ATAPTSKPSATSSKGPSSWPGPAPPSPRPSPRRPRP 344
Database: GMGI
Posted date: Oct 22, 2004 4:58 PM
Number of letters in database: 37,918,896
Number of sequences in database: 63,676
Lambda K H
0.314 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,128,602
Number of Sequences: 63676
Number of extensions: 141382
Number of successful extensions: 1256
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of query: 251
length of database: 12,639,632
effective HSP length: 95
effective length of query: 156
effective length of database: 6,590,412
effective search space: 1028104272
effective search space used: 1028104272
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0019b.10